Proteomic characterization of Aspergillus fumigatus treated with an antifungal coumarin for identification of novel target molecules of key pathways.

Abstract:

:A synthetic coumarin, N,N,N-triethyl-11-(4-methyl-2-oxo-2H-chromen-7-yloxy)-11-oxoundecan-1-aminium bromide (SCD-1), having potent activity against pathogenic Aspergilli (MIC90 15.62 μg/mL), was investigated to identify its molecular targets in the pathogen. The proteome of Aspergillus fumigatus was developed after treatment with sublethal doses of compound and analyzed. The results demonstrated 143 differentially expressed proteins on treatment with SCD-1. The expression of four proteins, namely cell division control protein, ubiquitin-like activating enzyme, vacuolar ATP synthase catalytic subunit A, and UTP-glucose-1-phosphate uridylyltransferase of A. fumigatus, was completely inhibited, whereas there were 13 newly expressed and 96 overexpressed proteins, mainly belonging to stress pathway. The treatment of A. fumigatus with SCD-1 also led to attenuation of proteins involved in cell replication and other important biosynthetic processes, including riboflavin biosynthesis, which has been pathogen-specific. In addition to key enzymatic players and antioxidants, nine hypothetical proteins were also identified, seven of which have been novel, being described for the first time. As no cellular functions have yet been described for these hypothetical proteins, their alteration in response to SCD-1 provides significant information about their putative roles in pathogen defense.

journal_name

J Proteome Res

authors

Singh S,Gupta S,Singh B,Sharma SK,Gupta VK,Sharma GL

doi

10.1021/pr300006j

subject

Has Abstract

pub_date

2012-06-01 00:00:00

pages

3259-68

issue

6

eissn

1535-3893

issn

1535-3907

journal_volume

11

pub_type

杂志文章
  • iTRAQ-coupled 2D LC-MS/MS analysis on protein profile in vascular smooth muscle cells incubated with S- and R-enantiomers of propranolol: possible role of metabolic enzymes involved in cellular anabolism and antioxidant activity.

    abstract::Propranolol is a nonselective beta-blocker of the beta-adrenergic receptors, and the S-enantiomer is more active compared with the R-enantiomer. Clinically, it has been shown to be effective in hypermetabolic burn patients by decreasing cardiac work, protein catabolism, and lipolysis. While gene expression profiles ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0605926

    authors: Sui J,Tan TL,Zhang J,Ching CB,Chen WN

    更新日期:2007-05-01 00:00:00

  • A new workflow for proteomic analysis of urinary exosomes and assessment in cystinuria patients.

    abstract::Cystinuria is a purely renal, rare genetic disease caused by mutations in cystine transporter genes and characterized by defective cystine reabsorption leading to kidney stones. In 14% of cases, patients undergo nephrectomy, but given the difficulty to predict the evolution of the disease, the identification of marker...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501003q

    authors: Bourderioux M,Nguyen-Khoa T,Chhuon C,Jeanson L,Tondelier D,Walczak M,Ollero M,Bekri S,Knebelmann B,Escudier E,Escudier B,Edelman A,Guerrera IC

    更新日期:2015-01-02 00:00:00

  • Application of label-free absolute quantitative proteomics in human gingival crevicular fluid by LC/MS E (gingival exudatome).

    abstract::Periodontal disease is perhaps the most common infectious disease in humans. Gingival crevicular fluid (GCF) is a local inflammatory exudate of the periodontal tissues. Its composition greatly varies between health and periodontal disease. GCF collection is rapid and noninvasive, but previous approaches aiming to anal...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900941z

    authors: Bostanci N,Heywood W,Mills K,Parkar M,Nibali L,Donos N

    更新日期:2010-05-07 00:00:00

  • Interaction between inducible nitric oxide synthase and calmodulin in Ca2+-free and -bound forms.

    abstract::We have obtained the first direct electrochemistry of full-length inducible nitric oxide synthase (iNOS) by entrapping the enzyme in polyethylenimine (PEI) film. The interaction between iNOS and calmodulin (CaM) was then studied, which revealed an enhanced electron-transfer reactivity of the enzyme facilitated by CaM....

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060544l

    authors: Xiao H,Zhou H,Chen G,Liu S,Li G

    更新日期:2007-04-01 00:00:00

  • Modulation of colon cancer by nutmeg.

    abstract::Colon cancer is the most common cancer and the third leading cause of cancer mortality in humans. Using mass spectrometry-based metabolomics, the current study revealed the accumulation of four uremic toxins (cresol sulfate, cresol glucuronide, indoxyl sulfate, and phenyl sulfate) in the serum of mice harboring adenom...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr5013152

    authors: Li F,Yang XW,Krausz KW,Nichols RG,Xu W,Patterson AD,Gonzalez FJ

    更新日期:2015-04-03 00:00:00

  • Oxidized transthyretin in amniotic fluid as an early marker of preeclampsia.

    abstract::Preeclampsia is a pregnancy-specific hypertensive syndrome and a major cause of maternal and fetal morbidity and mortality. At the present time, no reliable screening tests to identify women at risk are available. We have compared the amniotic fluids (AF) proteomic maps of five preeclamptic patients with those of five...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060315z

    authors: Vascotto C,Salzano AM,D'Ambrosio C,Fruscalzo A,Marchesoni D,di Loreto C,Scaloni A,Tell G,Quadrifoglio F

    更新日期:2007-01-01 00:00:00

  • Proteomic Analysis of the E3 Ubiquitin-Ligase Hakai Highlights a Role in Plasticity of the Cytoskeleton Dynamics and in the Proteasome System.

    abstract::Carcinoma, the most common type of cancer, arises from epithelial cells. The transition from adenoma to carcinoma is associated with the loss of E-cadherin and, in consequence, the disruption of cell-cell contacts. E-cadherin is a tumor suppressor, and it is down-regulated during epithelial-to-mesenchymal transition (...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00046

    authors: Díaz-Díaz A,Casas-Pais A,Calamia V,Castosa R,Martinez-Iglesias O,Roca-Lema D,Santamarina I,Valladares-Ayerbes M,Calvo L,Chantada V,Figueroa A

    更新日期:2017-08-04 00:00:00

  • Elucidation of glycoprotein structures by unspecific proteolysis and direct nanoESI mass spectrometric analysis of ZIC-HILIC-enriched glycopeptides.

    abstract::Protein glycosylation was explored by direct nanoESI MS and MS/MS analysis of ZIC-HILIC-enriched proteolytic glycopeptides without further separation or purification. In a previous publication, we demonstrated that a direct MS-based analysis of proteolytic glycopeptides is feasible for a number of proteins (Henning , ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101082c

    authors: Neue K,Mormann M,Peter-Katalinić J,Pohlentz G

    更新日期:2011-05-06 00:00:00

  • Comprehensive proteomic analysis of Trypanosoma cruzi epimastigote cell surface proteins by two complementary methods.

    abstract::Trypanosoma cruzi is a protozoan that causes Chagas' disease, a neglected infectious illness that affects millions of people, mostly in Latin America. Here, the cell surface subproteome of the T. cruzi epimastigote life form was characterized. In order to prepare samples enriched in epimastigote plasma membrane protei...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400110h

    authors: Queiroz RM,Charneau S,Motta FN,Santana JM,Roepstorff P,Ricart CA

    更新日期:2013-07-05 00:00:00

  • Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation.

    abstract::Tandem mass spectrometry (MS/MS) combined with bioinformatics tools have enabled fast and systematic protein identification based on peptide-to-spectrum matches. However, it remains challenging to obtain accurate identification of endogenous peptides, such as neuropeptides, peptide hormones, peptide pheromones, venom ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400446z

    authors: Hayakawa E,Menschaert G,De Bock PJ,Luyten W,Gevaert K,Baggerman G,Schoofs L

    更新日期:2013-12-06 00:00:00

  • Construction and Deciphering of Human Phosphorylation-Mediated Signaling Transduction Networks.

    abstract::Protein phosphorylation is the most abundant reversible covalent modification. Human protein kinases participate in almost all biological pathways, and approximately half of the kinases are associated with disease. PhoSigNet was designed to store and display human phosphorylation-mediated signal transduction networks,...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00249

    authors: Zhang M,Li H,He Y,Sun H,Xia L,Wang L,Sun B,Ma L,Zhang G,Li J,Li Y,Xie L

    更新日期:2015-07-02 00:00:00

  • The proapoptotic C16-ceramide-dependent pathway requires the death-promoting factor Btf in colon adenocarcinoma cells.

    abstract::Ceramides are central molecules in sphingolipid metabolism. They are involved in the regulation of cancer-cell growth, differentiation, senescence and apoptosis. To better understand how these secondary messengers induce their biological effects, adenocarcinoma cells (HCT116) were treated with exogenous long-chain cer...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9005316

    authors: Rénert AF,Leprince P,Dieu M,Renaut J,Raes M,Bours V,Chapelle JP,Piette J,Merville MP,Fillet M

    更新日期:2009-10-01 00:00:00

  • Transcriptomic and Neuropeptidomic Analysis of the Stick Insect, Carausius morosus.

    abstract::One of the most thoroughly studied insect species, with respect to locomotion behavior, is the stick insect Carausius morosus. Although detailed information exists on premotor networks controlling walking, surprisingly little is known about neuropeptides, which are certainly involved in motor activity generation and m...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00155

    authors: Liessem S,Ragionieri L,Neupert S,Büschges A,Predel R

    更新日期:2018-06-01 00:00:00

  • Proteomic Analysis of Charcoal-Stripped Fetal Bovine Serum Reveals Changes in the Insulin-like Growth Factor Signaling Pathway.

    abstract::Charcoal-stripped fetal bovine serum (CS-FBS) is commonly used to study androgen responsiveness and androgen metabolism in cultured prostate cancer (CaP) cells. Switching CaP cells from FBS to CS-FBS may reduce the activity of androgen receptor (AR), inhibit cell proliferation, or modulate intracellular androgen metab...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00135

    authors: Tu C,Fiandalo MV,Pop E,Stocking JJ,Azabdaftari G,Li J,Wei H,Ma D,Qu J,Mohler JL,Tang L,Wu Y

    更新日期:2018-09-07 00:00:00

  • Self-assembling protein arrays using electronic semiconductor microchips and in vitro translation.

    abstract::Protein arrays will greatly accelerate research and development in medical and biological sciences. We have used cell-free protein biosynthesis and a parallel immobilization strategy for producing protein biochips. We demonstrate a model two-protein microarray using luciferase and green fluorescent protein, both expre...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0300011

    authors: Oleinikov AV,Gray MD,Zhao J,Montgomery DD,Ghindilis AL,Dill K

    更新日期:2003-05-01 00:00:00

  • Epithelial proteomics in multiple organs and tissues: similarities and variations between cells, organs, and diseases.

    abstract::Epithelial cells play an important role in physiological and pathophysiological situations, with organ-, tissue-, type-, and function-specific patterns. Proteome analysis has been used to study epithelial-origin diseases and identify novel prognostic, diagnostic, and therapeutic markers. The present review compares th...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr050389v

    authors: Zhao H,Adler KB,Bai C,Tang F,Wang X

    更新日期:2006-04-01 00:00:00

  • Combined transcriptomic-(1)H NMR metabonomic study reveals that monoethylhexyl phthalate stimulates adipogenesis and glyceroneogenesis in human adipocytes.

    abstract::Adipose tissue is a major storage site for lipophilic environmental contaminants. The environmental metabolic disruptor hypothesis postulates that some pollutants can promote obesity or metabolic disorders by activating nuclear receptors involved in the control of energetic homeostasis. In this context, monoethylhexyl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200765v

    authors: Ellero-Simatos S,Claus SP,Benelli C,Forest C,Letourneur F,Cagnard N,Beaune PH,de Waziers I

    更新日期:2011-12-02 00:00:00

  • Technical and biological issues relevant to cell typing with aptamers.

    abstract::A number of aptamers have been selected against cell surface biomarkers or against eukaryotic tissue culture cells themselves. To determine the general utility of aptamers for assessing the cell surface proteome, we developed a standardized flow cytometry assay and carried out a comprehensive study with 7 different ap...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr801048z

    authors: Li N,Ebright JN,Stovall GM,Chen X,Nguyen HH,Singh A,Syrett A,Ellington AD

    更新日期:2009-05-01 00:00:00

  • Analysis of genomic and proteomic data using advanced literature mining.

    abstract::High-throughput technologies, such as proteomic screening and DNA micro-arrays, produce vast amounts of data requiring comprehensive analytical methods to decipher the biologically relevant results. One approach would be to manually search the biomedical literature; however, this would be an arduous task. We developed...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0340227

    authors: Hu Y,Hines LM,Weng H,Zuo D,Rivera M,Richardson A,LaBaer J

    更新日期:2003-07-01 00:00:00

  • Dynamic changes of the Caenorhabditis elegans proteome during ontogenesis assessed by quantitative analysis with 15N metabolic labeling.

    abstract::The development of the nematode Caenorhabditis elegans is a highly dynamic process. Although various studies have assessed global transcriptome changes, information on the dynamics of the proteome during ontogenesis is not available. We metabolically labeled C. elegans by using ¹⁵N ammonium chloride as a precursor in ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300385v

    authors: Geillinger KE,Kuhlmann K,Eisenacher M,Meyer HE,Daniel H,Spanier B

    更新日期:2012-09-07 00:00:00

  • Impact of Amidination on Peptide Fragmentation and Identification in Shotgun Proteomics.

    abstract::Peptide amidination labeling using S-methyl thioacetimidate (SMTA) is investigated in an attempt to increase the number and types of peptides that can be detected in a bottom-up proteomics experiment. This derivatization method affects the basicity of lysine residues and is shown here to significantly impact the idios...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00468

    authors: Li S,Dabir A,Misal SA,Tang H,Radivojac P,Reilly JP

    更新日期:2016-10-07 00:00:00

  • Label-Free LC-MS/MS Proteomic Analysis of Cerebrospinal Fluid Identifies Protein/Pathway Alterations and Candidate Biomarkers for Amyotrophic Lateral Sclerosis.

    abstract::Analysis of the cerebrospinal fluid (CSF) proteome has proven valuable to the study of neurodegenerative disorders. To identify new protein/pathway alterations and candidate biomarkers for amyotrophic lateral sclerosis (ALS), we performed comparative proteomic profiling of CSF from sporadic ALS (sALS), healthy control...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00804

    authors: Collins MA,An J,Hood BL,Conrads TP,Bowser RP

    更新日期:2015-11-06 00:00:00

  • Dual expression system suitable for high-throughput fluorescence-based screening and production of soluble proteins.

    abstract::Many studies that aim to characterize the proteome structurally or functionally require the production of pure protein in a high-throughput format. We have developed a fast and flexible integrated system for cloning, protein expression in Escherichia coli, solubility screening and purification that can be completely a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050230i

    authors: Braud S,Moutiez M,Belin P,Abello N,Drevet P,Zinn-Justin S,Courçon M,Masson C,Dassa J,Charbonnier JB,Boulain JC,Ménez A,Genet R,Gondry M

    更新日期:2005-11-01 00:00:00

  • Response to the Comments on "Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Proteomics Method".

    abstract::Russell and colleagues deserve credit for being the first to use a QconCAT standard to simultaneously quantify both the wild-type and mutant peptides of a protein (i.e., CYP2B6) ( J. Proteome Res. 2013, 12 (12), 5934-5942. DOI: 10.1021/pr400279u). However, the rationale of their study was entirely different from ours ...

    journal_title:Journal of proteome research

    pub_type: 评论,杂志文章

    doi:10.1021/acs.jproteome.8b00940

    authors: Shi J,Wang X,Zhu H,Jiang H,Wang D,Nesvizhskii A,Zhu HJ

    更新日期:2019-03-01 00:00:00

  • Proteomics approach to identify the interacting partners of cellular prion protein and characterization of Rab7a interaction in neuronal cells.

    abstract::The present study was undertaken to identify proteins interacting with PrP(C) that could provide new insights into its physiological functions and pathological role. Human PrP(C) was expressed in prion protein-deficient murine hippocampus (HpL3-4) neuronal cells. The PrP(C) along with its interacting proteins were aff...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2001989

    authors: Zafar S,von Ahsen N,Oellerich M,Zerr I,Schulz-Schaeffer WJ,Armstrong VW,Asif AR

    更新日期:2011-07-01 00:00:00

  • On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications.

    abstract::We have expanded our recent on-line LC-MS platform for large peptide analysis to combine collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced (CRCID) species derived from ETD to determine sites of phosphorylation and glycosylation modifications, as well as t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070313u

    authors: Wu SL,Hühmer AF,Hao Z,Karger BL

    更新日期:2007-11-01 00:00:00

  • Standardized protocols for quality control of MRM-based plasma proteomic workflows.

    abstract::Mass spectrometry (MS)-based proteomics is rapidly emerging as a viable technology for the identification and quantitation of biological samples, such as human plasma--the most complex yet commonly employed biofluid in clinical analyses. The transition from a qualitative to quantitative science is required if proteomi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300893w

    authors: Percy AJ,Chambers AG,Smith DS,Borchers CH

    更新日期:2013-01-04 00:00:00

  • Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models.

    abstract::Tandem mass spectrometry has become the method of choice for high-throughput, quantitative analysis in proteomics. Peptide spectrum matching algorithms score the concordance between the experimental and the theoretical spectra of candidate peptides by evaluating the number (or proportion) of theoretically possible fra...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00499

    authors: Kirik U,Refsgaard JC,Jensen LJ

    更新日期:2019-06-07 00:00:00

  • Proteomic Profiling of Fast Neutron-Induced Soybean Mutant Unveiled Pathways Associated with Increased Seed Protein Content.

    abstract::Mutagenesis through fast neutron (FN) radiation of soybean resulted in a mutant with a 15% increase in seed protein content. A comparative genomic hybridization analysis confirmed that the mutant is lacking 24 genes located at chromosomes 5 and 10. A tandem mass tag-based proteomic profiling of the wild type and the F...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00160

    authors: Islam N,Krishnan HB,Natarajan S

    更新日期:2020-10-02 00:00:00

  • Parallel tandem: a program for parallel processing of tandem mass spectra using PVM or MPI and X!Tandem.

    abstract::A method for the rapid correlation of tandem mass spectra to a list of protein sequences in a database has been developed. The combination of the fast and accurate computational search algorithm, X!Tandem, and a Linux cluster parallel computing environment with PVM or MPI, significantly reduces the time required to pe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050058i

    authors: Duncan DT,Craig R,Link AJ

    更新日期:2005-09-01 00:00:00