Using ESTs database to predict and validate single polymorphisms at the HLA system.

Abstract:

:We propose a bioinformatics pipeline in which we use an ESTs database to predict and validate single-nucleotide polymorphisms (SNPs) directly linked to gene-coding regions at the HLA class I genes (HLA-A, HLA-B and HLA-C). Annotation originated from our analysis revealed various classes of possible new variations that may indicate possible new alleles. Thus, bioinformatics pipelines seem to be useful approaches to help screening for novel genetic variations at the HLA panel, and further analysis will foster this aim to provide celerity at the massive analysis of data currently generated in large-scale high-throughput experiments.

journal_name

Int J Immunogenet

authors

Figueiredo TC,de Oliveira JR

doi

10.1111/j.1744-313X.2011.01076.x

subject

Has Abstract

pub_date

2012-06-01 00:00:00

pages

253-7

issue

3

eissn

1744-3121

issn

1744-313X

journal_volume

39

pub_type

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