Structural studies of NF-κB signaling.

Abstract:

:NF-κBs are a family of transcription factors that control a number of essential cellular functions including immune responses, cell proliferation and antiapoptosis. NF-κB activities are tightly regulated through upstream signaling molecules and downstream feedback loops. In this review, structural discoveries in the NF-κB pathway are presented. With the structure information, the following questions may be addressed: (1) How do NF-κBs activate their target genes? (2) How do IκBs inhibit NF-κB activities in the steady state? (3) How do upstream signaling molecules activate the NF-κB pathway? and (4) How do the feedback loops shut down the NF-κB pathway to avoid constitutive NF-κB activation?

journal_name

Cell Res

journal_title

Cell research

authors

Zheng C,Yin Q,Wu H

doi

10.1038/cr.2010.171

subject

Has Abstract

pub_date

2011-01-01 00:00:00

pages

183-95

issue

1

eissn

1001-0602

issn

1748-7838

pii

cr2010171

journal_volume

21

pub_type

杂志文章,评审
  • The RNA-binding protein QKI5 regulates primary miR-124-1 processing via a distal RNA motif during erythropoiesis.

    abstract::MicroRNA (miRNA) biogenesis is finely controlled by complex layers of post-transcriptional regulators, including RNA-binding proteins (RBPs). Here, we show that an RBP, QKI5, activates the processing of primary miR-124-1 (pri-124-1) during erythropoiesis. QKI5 recognizes a distal QKI response element and recruits Micr...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2017.26

    authors: Wang F,Song W,Zhao H,Ma Y,Li Y,Zhai D,Pi J,Si Y,Xu J,Dong L,Su R,Zhang M,Zhu Y,Ren X,Miao F,Liu W,Li F,Zhang J,He A,Shan G,Hui J,Wang L,Yu J

    更新日期:2017-03-01 00:00:00

  • Codon optimality and mRNA decay.

    abstract::Recent evidence indicates that codon optimality is a broad determinant of mRNA stability. A study by Radhakrishnan et al. in Cell raises the possibility that the conserved DEAD-box protein Dhh1 underlies the phenomenon. ...

    journal_title:Cell research

    pub_type: 评论,杂志文章

    doi:10.1038/cr.2016.127

    authors: Harigaya Y,Parker R

    更新日期:2016-12-01 00:00:00

  • Methyl-CpG binding proteins in the nervous system.

    abstract::Classical methyl-CpG binding proteins contain the conserved DNA binding motif methyl-cytosine binding domain (MBD), which preferentially binds to methylated CpG dinucleotides. These proteins serve as transcriptional repressors, mediating gene silencing via DNA cytosine methylation. Mutations in methyl-CpG binding prot...

    journal_title:Cell research

    pub_type: 杂志文章,评审

    doi:10.1038/sj.cr.7290294

    authors: Fan G,Hutnick L

    更新日期:2005-04-01 00:00:00

  • Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.

    abstract::Long-range chromatin interactions between enhancers and promoters are essential for transcription of many developmentally controlled genes in mammals and other metazoans. Currently, the exact mechanisms that connect distal enhancers to their specific target promoters remain to be fully elucidated. Here, we show that t...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2018.1

    authors: Yan J,Chen SA,Local A,Liu T,Qiu Y,Dorighi KM,Preissl S,Rivera CM,Wang C,Ye Z,Ge K,Hu M,Wysocka J,Ren B

    更新日期:2018-02-01 00:00:00

  • Viral counterattack against the host innate immune system.

    abstract::Paramyxoviruses evade antiviral immune response using a small nonstructural protein, V, which binds to the host dsRNA sensor MDA5 and prevents it from activating the interferon signaling pathway. A recent crystal structure of the V protein in complex with MDA5, published in Science, revealed that V disrupts the struct...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2013.32

    authors: Wu B,Hur S

    更新日期:2013-06-01 00:00:00

  • Crystal structure of the WOPR-DNA complex and implications for Wor1 function in white-opaque switching of Candida albicans.

    abstract::Wor1 (white-opaque switching regulator 1) is a master regulator of the white-opaque switching in Candida albicans, an opportunistic human fungal pathogen, and is associated with its pathogenicity and commensality. Wor1 contains a conserved DNA-binding region at the N-terminus, consisting of two conserved segments (WOP...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2014.102

    authors: Zhang S,Zhang T,Yan M,Ding J,Chen J

    更新日期:2014-09-01 00:00:00

  • Transcriptional, post-transcriptional and post-translational regulations of gene expression during leaf polarity formation.

    abstract::Leaf morphogenesis requires the establishment of adaxial-abaxial polarity after primordium initiation from the shoot apical meristem (SAM). Several families of transcription factors are known to play critical roles in promoting adaxial or abaxial leaf fate. Recently, post-transcriptional gene silencing pathways have b...

    journal_title:Cell research

    pub_type: 杂志文章,评审

    doi:10.1038/cr.2007.45

    authors: Xu L,Yang L,Huang H

    更新日期:2007-06-01 00:00:00

  • Negative regulation of TGF-beta signaling in development.

    abstract::The TGF-beta superfamily members have important roles in controlling patterning and tissue formation in both invertebrates and vertebrates. Two types of signal transducers, receptors and Smads, mediate the signaling to regulate expression of their target genes. Despite of the relatively simple signal transduction path...

    journal_title:Cell research

    pub_type: 杂志文章,评审

    doi:10.1038/sj.cr.7290246

    authors: Chen YG,Meng AM

    更新日期:2004-12-01 00:00:00

  • C/EBPalphap30 plays transcriptional regulatory roles distinct from C/EBPalphap42.

    abstract::CCAAT/enhancer binding protein alpha (C/EBPalpha) is a transcriptional regulatory factor that inhibits cell proliferation, and alternative translational initiation produces two polypeptides, C/EBPalphap30 and C/EBPalphap42. By expression profiling, it was revealed that C/EBPalphap30 specifically inhibited a unique set...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/sj.cr.7310121

    authors: Wang C,Chen X,Wang Y,Gong J,Hu G

    更新日期:2007-04-01 00:00:00

  • Structural insights of mTOR complex 1.

    abstract::The mammalian target of rapamycin (mTOR), also known as the mechanistic target of rapamycin, is a central cell growth regulating kinase that forms large molecular complexes in all eukaryotic cells. A paper recently published in Science reports the architecture of mTOR complex 1 (mTORC1) and provides molecular insights...

    journal_title:Cell research

    pub_type: 评论,杂志文章

    doi:10.1038/cr.2016.10

    authors: Yuan HX,Guan KL

    更新日期:2016-03-01 00:00:00

  • Vitamin B12 modulates Parkinson's disease LRRK2 kinase activity through allosteric regulation and confers neuroprotection.

    abstract::Missense mutations in Leucine-Rich Repeat Kinase 2 (LRRK2) cause the majority of familial and some sporadic forms of Parkinson's disease (PD). The hyperactivity of LRRK2 kinase induced by the pathogenic mutations underlies neurotoxicity, promoting the development of LRRK2 kinase inhibitors as therapeutics. Many potent...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/s41422-019-0153-8

    authors: Schaffner A,Li X,Gomez-Llorente Y,Leandrou E,Memou A,Clemente N,Yao C,Afsari F,Zhi L,Pan N,Morohashi K,Hua X,Zhou MM,Wang C,Zhang H,Chen SG,Elliott CJ,Rideout H,Ubarretxena-Belandia I,Yue Z

    更新日期:2019-04-01 00:00:00

  • Small molecule-based disruption of the Axin/β-catenin protein complex regulates mesenchymal stem cell differentiation.

    abstract::The Wnt/β-catenin pathway plays important roles in the differentiation of multiple cell types, including mesenchymal stem cells. Using a cell-based chemical screening assay with a synthetic chemical library of 270 000 compounds, we identified the compound SKL2001 as a novel agonist of the Wnt/β-catenin pathway and unc...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2011.127

    authors: Gwak J,Hwang SG,Park HS,Choi SR,Park SH,Kim H,Ha NC,Bae SJ,Han JK,Kim DE,Cho JW,Oh S

    更新日期:2012-01-01 00:00:00

  • Sodium-activated macrophages: the salt mine expands.

    abstract::High sodium consumption has been raising interest as a putative environmental factor linking Western lifestyle to the growing epidemic of autoimmune and inflammatory diseases. Now Zhang and colleagues show that high sodium drives macrophage to acquire a new proinflammatory effector phenotype with a distinct signature,...

    journal_title:Cell research

    pub_type: 评论,杂志文章

    doi:10.1038/cr.2015.91

    authors: Lucca LE,Hafler DA

    更新日期:2015-08-01 00:00:00

  • Expression of cytokine mRNA during immuno-modulation of murine suppressor macrophages.

    abstract::In order to analyze the mechanism of immuno-modulation by LPS on murine peritoneal suppressor macrophages, we have, using RNase protection assay, checked the changes of mRNA expression pattern of several cytokine genes during the immuno-modulation. It has been found that, after treating peritoneal suppressor macrophag...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.1998.32

    authors: Feng WG,Chang ZL

    更新日期:1998-12-01 00:00:00

  • Modifications and functional genomics of human transfer RNA.

    abstract::Transfer RNA (tRNA) is present at tens of millions of transcripts in a human cell and is the most abundant RNA in moles among all cellular RNAs. tRNA is also the most extensively modified RNA with, on an average, 13 modifications per molecule. The primary function of tRNA as the adaptor of amino acids and the genetic ...

    journal_title:Cell research

    pub_type: 杂志文章,评审

    doi:10.1038/s41422-018-0013-y

    authors: Pan T

    更新日期:2018-04-01 00:00:00

  • Single-cell transcriptomic analysis defines the interplay between tumor cells, viral infection, and the microenvironment in nasopharyngeal carcinoma.

    abstract::Nasopharyngeal carcinoma (NPC) is an Epstein-Barr virus (EBV)-associated malignancy with a complex tumor ecosystem. How the interplay between tumor cells, EBV, and the microenvironment contributes to NPC progression and immune evasion remains unclear. Here we performed single-cell RNA sequencing on ~104,000 cells from...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/s41422-020-00402-8

    authors: Jin S,Li R,Chen MY,Yu C,Tang LQ,Liu YM,Li JP,Liu YN,Luo YL,Zhao Y,Zhang Y,Xia TL,Liu SX,Liu Q,Wang GN,You R,Peng JY,Li J,Han F,Wang J,Chen QY,Zhang L,Mai HQ,Gewurz BE,Zhao B,Young LS,Zhong Q,Bai F,

    更新日期:2020-11-01 00:00:00

  • TRAIL receptor mediates inflammatory cytokine release in an NF-kappaB-dependent manner.

    abstract::In the present article, we report that DR4 or DR5 overexpression dramatically activates the release of the inflammatory cytokines IL-8, TNF-alpha, CCL20, MIP-2 and MIP-1beta in an NF-kappaB-dependent manner in 293T, MDA-MB-231 and HCT-116 cells. We showed that death receptor-mediated signals were extracellular domain-...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2009.57

    authors: Tang W,Wang W,Zhang Y,Liu S,Liu Y,Zheng D

    更新日期:2009-06-01 00:00:00

  • Author Correction: Cryo-EM structure and biochemical analysis reveal the basis of the functional difference between human PI3KC3-C1 and -C2.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Cell research

    pub_type: 已发布勘误

    doi:10.1038/s41422-020-0311-z

    authors: Ma M,Liu JJ,Li Y,Huang Y,Ta N,Chen Y,Fu H,Ye MD,Ding Y,Huang W,Wang J,Dong MQ,Yu L,Wang HW

    更新日期:2020-06-01 00:00:00

  • The interaction between the human beta-globin locus control region and nuclear matrix.

    abstract::Our previous study showed that hydroxyurea (Hu) could induce HEL cells to express human beta-globin gene. However the molecular mechanisms by which the expression of beta-globin gene is activated and regulated are poorly understood. Here we show that the binding patterns between the core DNA sequences (HS2 core sequen...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/sj.cr.7290144

    authors: Zhang SB,Qian RL

    更新日期:2002-12-01 00:00:00

  • DNA damage triggers tubular endoplasmic reticulum extension to promote apoptosis by facilitating ER-mitochondria signaling.

    abstract::The endoplasmic reticulum (ER) is composed of the nuclear envelope, perinuclear sheets and a peripheral tubular network. The peripheral ER and mitochondria form tight contacts at specific subdomains, which coordinate the functions of the two organelles and are required for multiple cellular processes such as Ca2+ tran...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/s41422-018-0065-z

    authors: Zheng P,Chen Q,Tian X,Qian N,Chai P,Liu B,Hu J,Blackstone C,Zhu D,Teng J,Chen J

    更新日期:2018-08-01 00:00:00

  • Regulation of cellular senescence by the essential caveolar component PTRF/Cavin-1.

    abstract::Polymerase I and transcript release factor (PTRF, also known as Cavin-1) is an essential component in the biogenesis and function of caveolae. Here, we show that PTRF expression is increased in senescent human fibroblasts. Importantly, overexpression of PTRF induced features characteristic of cellular senescence, wher...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2011.56

    authors: Bai L,Deng X,Li J,Wang M,Li Q,An W,A D,Cong YS

    更新日期:2011-07-01 00:00:00

  • RNF13: a novel RING-type ubiquitin ligase over-expressed in pancreatic cancer.

    abstract::Protein ubiquitination by E3 ubiquitin ligases plays an important role in cancer development. In this study, we provide experimental evidence that a RING-finger-containing protein RNF13 is an ER/Golgi membrane-associated E3 ubiquitin ligase and its RING finger domain is required for the ubiquitin ligase activity. Immu...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2008.285

    authors: Zhang Q,Meng Y,Zhang L,Chen J,Zhu D

    更新日期:2009-03-01 00:00:00

  • Epigenetics: heterochromatin meets RNAi.

    abstract::The term epigenetics refers to heritable changes not encoded by DNA. The organization of DNA into chromatin fibers affects gene expression in a heritable manner and is therefore one mechanism of epigenetic inheritance. Large parts of eukaryotic genomes consist of constitutively highly condensed heterochromatin, import...

    journal_title:Cell research

    pub_type: 杂志文章,评审

    doi:10.1038/cr.2009.13

    authors: Djupedal I,Ekwall K

    更新日期:2009-03-01 00:00:00

  • Structural insights into the negative regulation of BRI1 signaling by BRI1-interacting protein BKI1.

    abstract::Brassinosteroids (BRs) are essential steroid hormones that have crucial roles in plant growth and development. BRs are perceived by the cell-surface receptor-like kinase brassinosteroid insensitive 1 (BRI1). In the absence of BRs, the cytosolic kinase domain (KD) of BRI1 is inhibited by its auto-inhibitory carboxyl te...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2014.132

    authors: Wang J,Jiang J,Wang J,Chen L,Fan SL,Wu JW,Wang X,Wang ZX

    更新日期:2014-11-01 00:00:00

  • Melanocortin-1 receptor gene variants in four Chinese ethnic populations.

    abstract::There is strong relationship between melanocortin-1 receptor (MC1R) gene variants and human hair color and skin type. Based on a sequencing study of MC1R gene in 50 individuals from the Uygur, Tibetan, Wa and Dai ethnic populations, we discuss the occurrence of 7 mc1r variants consisting of 5 nonsynonymous sites (Val6...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/sj.cr.7290070

    authors: Peng S,Lu XM,Luo HR,Xiang-Yu JG,Zhang YP

    更新日期:2001-03-01 00:00:00

  • discs large regulates somatic cyst cell survival and expansion in Drosophila testis.

    abstract::Gonad development requires a coordinated soma-germline interaction that ensures renewal and differentiation of germline and somatic stem cells to ultimately produce mature gametes. The Drosophila tumour suppressor gene discs large (dlg) encodes a septate junction protein functioning during epithelial polarization, asy...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2009.71

    authors: Papagiannouli F,Mechler BM

    更新日期:2009-10-01 00:00:00

  • International non-governmental actors in HIV/AIDS prevention in China.

    abstract::International non-governmental organizations were among the first international actors that responded to the emergence of AIDS crisis in China. Since 1994, the number of international non-governmental organizations and charitable foundations working in AIDS related issue areas in China has grown steadily and substanti...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/sj.cr.7290369

    authors: Wu FS

    更新日期:2005-11-01 00:00:00

  • Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.

    abstract::Achieving increased grain productivity has long been the overriding focus of cereal breeding programs. The ideotype approach has been used to improve rice yield potential at the International Rice Research Institute and in China. However, the genetic basis of yield-related traits in rice remains unclear. Here, we show...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2017.98

    authors: Wang S,Wu K,Qian Q,Liu Q,Li Q,Pan Y,Ye Y,Liu X,Wang J,Zhang J,Li S,Wu Y,Fu X

    更新日期:2017-09-01 00:00:00

  • ROS sets the stage for macrophage differentiation.

    abstract::While M1 macrophages are highly pro-inflammatory and microbicidal, M2 macrophages and the related tumor associated macrophages (TAMs) regulate tissue remodeling and angiogenesis and can display immunomodulatory activity. In July issue of Cell Research, Zhang et al. show that ROS production, critical for the activation...

    journal_title:Cell research

    pub_type: 评论,杂志文章

    doi:10.1038/cr.2013.88

    authors: Covarrubias A,Byles V,Horng T

    更新日期:2013-08-01 00:00:00

  • Molecular mechanisms of "off-on switch" of activities of human IDH1 by tumor-associated mutation R132H.

    abstract::Human cytosolic NADP-IDH (IDH1) has recently been found to be involved in tumorigenesis. Notably, the tumor-derived IDH1 mutations identified so far mainly occur at Arg132, and mutation R132H is the most prevalent one. This mutation impairs the oxidative IDH activity of the enzyme, but renders a new reduction function...

    journal_title:Cell research

    pub_type: 杂志文章

    doi:10.1038/cr.2010.145

    authors: Yang B,Zhong C,Peng Y,Lai Z,Ding J

    更新日期:2010-11-01 00:00:00