Aire employs a histone-binding module to mediate immunological tolerance, linking chromatin regulation with organ-specific autoimmunity.

Abstract:

:Aire induces ectopic expression of peripheral tissue antigens (PTAs) in thymic medullary epithelial cells, which promotes immunological tolerance. Beginning with a broad screen of histone peptides, we demonstrate that the mechanism by which this single factor controls the transcription of thousands of genes involves recognition of the amino-terminal tail of histone H3, but not of other histones, by one of Aire's plant homeodomain (PHD) fingers. Certain posttranslational modifications of H3 tails, notably dimethylation or trimethylation at H3K4, abrogated binding by Aire, whereas others were tolerated. Similar PHD finger-H3 tail-binding properties were recently reported for BRAF-histone deacetylase complex 80 and DNA methyltransferase 3L; sequence alignment, molecular modeling, and biochemical analyses showed these factors and Aire to have structure-function relationships in common. In addition, certain PHD1 mutations underlying the polyendocrine disorder autoimmune polyendocrinopathy-candidiases-ectodermaldystrophy compromised Aire recognition of H3. In vitro binding assays demonstrated direct physical interaction between Aire and nucleosomes, which was in part buttressed by its affinity to DNA. In vivo Aire interactions with chromosomal regions depleted of H3K4me3 were dependent on its H3 tail-binding activity, and this binding was necessary but not sufficient for the up-regulation of genes encoding PTAs. Thus, Aire's activity as a histone-binding module mediates the thymic display of PTAs that promotes self-tolerance and prevents organ-specific autoimmunity.

authors

Koh AS,Kuo AJ,Park SY,Cheung P,Abramson J,Bua D,Carney D,Shoelson SE,Gozani O,Kingston RE,Benoist C,Mathis D

doi

10.1073/pnas.0808470105

subject

Has Abstract

pub_date

2008-10-14 00:00:00

pages

15878-83

issue

41

eissn

0027-8424

issn

1091-6490

pii

0808470105

journal_volume

105

pub_type

杂志文章
  • Speculative synthetic chemistry and the nitrogenase problem.

    abstract::There exist a limited but growing number of biological metal centers whose properties lie conspicuously outside the realm of known inorganic chemistry. The synthetic analogue approach, broadly directed, offers a powerful exploratory tool that can define intrinsic chemical possibilities for these sites while simultaneo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章,评审

    doi:10.1073/pnas.0630028100

    authors: Lee SC,Holm RH

    更新日期:2003-04-01 00:00:00

  • Cleavage of the membrane precursor for transforming growth factor alpha is a regulated process.

    abstract::Transforming growth factor alpha (TGF-alpha) is generated by cleavage of a membrane-anchored precursor protein, proTGF-alpha. ProTGF-alpha is cleaved at a slow rate and accumulates on the cell surface, thereby mediating cell-cell adhesion and mitogenic stimulation. We show here that cleavage of membrane proTGF-alpha b...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.5.1726

    authors: Pandiella A,Massagué J

    更新日期:1991-03-01 00:00:00

  • Expression of a flower-specific Myb protein in leaf cells using a viral vector causes ectopic activation of a target promoter.

    abstract::The promoter of the bean PAL2 gene (encoding phenylalanine ammonia-lyase; EC 4.3.1.5) is a model for studies of tissue-restricted gene expression in plants. Petal epidermis is one of the tissues in which this promoter is activated in tobacco. Previous work suggested that a major factor establishing the pattern of PAL2...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.92.15.6901

    authors: Sablowski RW,Baulcombe DC,Bevan M

    更新日期:1995-07-18 00:00:00

  • A high-resolution landscape of mutations in the BCL6 super-enhancer in normal human B cells.

    abstract::The super-enhancers (SEs) of lineage-specific genes in B cells are off-target sites of somatic hypermutation. However, the inability to detect sufficient numbers of mutations in normal human B cells has precluded the generation of a high-resolution mutational landscape of SEs. Here we captured and sequenced 12 B cell ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1914163116

    authors: Shen JC,Kamath-Loeb AS,Kohrn BF,Loeb KR,Preston BD,Loeb LA

    更新日期:2019-12-03 00:00:00

  • Genes in one megabase of the HLA class I region.

    abstract::To define the gene content of the HLA class I region, cDNA selection was applied to three overlapping yeast artificial chromosomes (YACs) that spanned 1 megabase (Mb) of this region of the human major histocompatibility complex. These YACs extended from the region centromeric to HLA-E to the region telomeric to HLA-F....

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.24.11870

    authors: Wei H,Fan WF,Xu H,Parimoo S,Shukla H,Chaplin DD,Weissman SM

    更新日期:1993-12-15 00:00:00

  • Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.

    abstract::Argonaute and Piwi proteins are key players in the RNA silencing pathway, with the former interacting with micro-RNAs (miRNAs) and siRNAs, whereas the latter targets piwi-interacting RNAs (piRNAs) that are 2'-O-methylated (2(')-OCH(3)) at their 3' ends. Germline-specific piRNAs and Piwi proteins play a critical role i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1017762108

    authors: Tian Y,Simanshu DK,Ma JB,Patel DJ

    更新日期:2011-01-18 00:00:00

  • Fluorescence correlation analysis of probe diffusion simplifies quantitative pathogen detection by PCR.

    abstract::A sensitive, labor-saving, and easily automatable nonradioactive procedure named APEX-FCS (amplified probe extension detected by fluorescence correlation spectroscopy) has been established to detect specific in vitro amplification of pathogen genomic sequences. As an example, Mycobacterium tuberculosis genomic DNA was...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.23.12805

    authors: Walter NG,Schwille P,Eigen M

    更新日期:1996-11-12 00:00:00

  • Transcribed chromatin exhibits an altered nucleosomal spacing.

    abstract::The nucleosomal repeat lengths of bulk chromatin and the chromatin of transcriptionally active and inactive genes were analyzed in two mouse cell lines and adult mouse spleens. The adult beta-globin gene exhibits a nucleosomal repeat length approximately 11 base pairs longer than (i) an inactive embryonic globin gene,...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.18.5505

    authors: Smith RD,Seale RL,Yu J

    更新日期:1983-09-01 00:00:00

  • A geometric identity for Pappus' theorem.

    abstract::An expression in the exterior algebra of a Peano space yielding Pappus' theorem was originally given by Doubilet, Rota, and Stein [Doubilet, P., Rota, G.-C. & Stein, J. (1974) Stud. Appl. Math. 8, 185-216]. Motivated by an identity of Rota, I give an identity in a Grassmann-Cayley algebra of step 3, involving joins an...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.8.2909

    authors: Hawrylycz M

    更新日期:1994-04-12 00:00:00

  • Hormone and receptor interplay in the regulation of mosquito lipid metabolism.

    abstract::Mosquitoes transmit devastating human diseases because they need vertebrate blood for egg development. Metabolism in female mosquitoes is tightly coupled with blood meal-mediated reproduction, which requires an extremely high level of energy consumption. Functional analysis has shown that major genes encoding for enzy...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1619326114

    authors: Wang X,Hou Y,Saha TT,Pei G,Raikhel AS,Zou Z

    更新日期:2017-03-28 00:00:00

  • Optimizing transmembrane domain helicity accelerates insulin receptor internalization and lateral mobility.

    abstract::Transmembrane (TM) domains of integral membrane proteins are generally thought to be helical. However, a Gly-Pro sequence within the TM domain of the insulin receptor is predicted to act as a helix breaker. CD analyses of model TM peptides in a lipid-like environment show that substitution of Gly and Pro by Ala enhanc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.12.5762

    authors: Goncalves E,Yamada K,Thatte HS,Backer JM,Golan DE,Kahn CR,Shoelson SE

    更新日期:1993-06-15 00:00:00

  • Dynamics and determinants of the force of infection of dengue virus from 1994 to 2015 in Managua, Nicaragua.

    abstract::Dengue virus (DENV) is the most prevalent human vector-borne viral disease. The force of infection (FoI), the rate at which susceptible individuals are infected in a population, is an important metric for infectious disease modeling. Understanding how and why the FoI of DENV changes over time is critical for developin...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1809253115

    authors: Katzelnick LC,Ben-Shachar R,Mercado JC,Rodriguez-Barraquer I,Elizondo D,Arguello S,Nuñez A,Ojeda S,Sanchez N,Lopez Mercado B,Gresh L,Burger-Calderon R,Kuan G,Gordon A,Balmaseda A,Harris E

    更新日期:2018-10-16 00:00:00

  • Mouse digit tip regeneration is mediated by fate-restricted progenitor cells.

    abstract::Regeneration of appendages is frequent among invertebrates as well as some vertebrates. However, in mammals this has been largely relegated to digit tip regeneration, as found in mice and humans. The regenerated structures are formed from a mound of undifferentiated cells called a blastema, found just below the site o...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1118017108

    authors: Lehoczky JA,Robert B,Tabin CJ

    更新日期:2011-12-20 00:00:00

  • Load-dependent ADP binding to myosins V and VI: implications for subunit coordination and function.

    abstract::Dimeric myosins V and VI travel long distances in opposite directions along actin filaments in cells, taking multiple steps in a "hand-over-hand" fashion. The catalytic cycles of both myosins are limited by ADP dissociation, which is considered a key step in the walking mechanism of these motors. Here, we demonstrate ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0800564105

    authors: Oguchi Y,Mikhailenko SV,Ohki T,Olivares AO,De La Cruz EM,Ishiwata S

    更新日期:2008-06-03 00:00:00

  • Circadian misalignment increases cardiovascular disease risk factors in humans.

    abstract::Shift work is a risk factor for hypertension, inflammation, and cardiovascular disease. This increased risk cannot be fully explained by classic risk factors. One of the key features of shift workers is that their behavioral and environmental cycles are typically misaligned relative to their endogenous circadian syste...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章,随机对照试验

    doi:10.1073/pnas.1516953113

    authors: Morris CJ,Purvis TE,Hu K,Scheer FA

    更新日期:2016-03-08 00:00:00

  • Amphiregulin: a bifunctional growth-modulating glycoprotein produced by the phorbol 12-myristate 13-acetate-treated human breast adenocarcinoma cell line MCF-7.

    abstract::A glycoprotein, termed amphiregulin (AR), inhibits growth of several human carcinoma cells in culture and stimulates proliferation of human fibroblasts and certain other tumor cells. It has been purified to apparent homogeneity from serum-free conditioned medium of MCF-7 human breast carcinoma cells that had been trea...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.17.6528

    authors: Shoyab M,McDonald VL,Bradley JG,Todaro GJ

    更新日期:1988-09-01 00:00:00

  • Synthetic gene-regulatory networks in the opportunistic human pathogen Streptococcus pneumoniae.

    abstract::Streptococcus pneumoniae can cause disease in various human tissues and organs, including the ear, the brain, the blood, and the lung, and thus in highly diverse and dynamic environments. It is challenging to study how pneumococci control virulence factor expression, because cues of natural environments and the presen...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1920015117

    authors: Sorg RA,Gallay C,Van Maele L,Sirard JC,Veening JW

    更新日期:2020-11-03 00:00:00

  • Hydroxyl hydrogen conformations in trypsin determined by the neutron diffraction solvent difference map method: relative importance of steric and electrostatic factors in defining hydrogen-bonding geometries.

    abstract::Neutron diffraction maps have been used to assign the rotor conformations of the hydroxyl hydrogens in trypsin. Knowledge of these conformations is used to assess the relative importance of steric and electrostatic effects in conferring the H-bonding geometries of these groups. A general finding was that most hydroxyl...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.12.4468

    authors: Kossiakoff AA,Shpungin J,Sintchak MD

    更新日期:1990-06-01 00:00:00

  • Mycobacterial infection of macrophages results in membrane-permeable phagosomes.

    abstract::Cell-mediated immunity is critical for host resistance to tuberculosis. T lymphocytes recognizing antigens presented by the major histocompatibility complex (MHC) class I and class II molecules have been found to be necessary for control of mycobacterial infection. Mice genetically deficient in the generation of MHC c...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.26.15190

    authors: Teitelbaum R,Cammer M,Maitland ML,Freitag NE,Condeelis J,Bloom BR

    更新日期:1999-12-21 00:00:00

  • Variation in the sensitivity of organismal body temperature to climate change over local and geographic scales.

    abstract::Global climate change is expected to have broad ecological consequences for species and communities. Attempts to forecast these consequences usually assume that changes in air or water temperature will translate into equivalent changes in a species' organismal body temperature. This simple change is unlikely because a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0510992103

    authors: Gilman SE,Wethey DS,Helmuth B

    更新日期:2006-06-20 00:00:00

  • Pressure-enhanced ortho-para conversion in solid hydrogen up to 58 GPa.

    abstract::We measured the ortho-para conversion rate in solid hydrogen by using Raman scattering in a diamond-anvil cell, extending previous measurements by a factor of 60 in pressure. We confirm previous experiments that suggested a decrease in the conversion rate above about 0.5 GPa. We observe a distinct minimum at 3 GPa fol...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.22.12269

    authors: Eggert JH,Karmon E,Hemley RJ,Mao A,Goncharov AF

    更新日期:1999-10-26 00:00:00

  • Diversity enhances agricultural productivity via rhizosphere phosphorus facilitation on phosphorus-deficient soils.

    abstract::Intercropping, which grows at least two crop species on the same pieces of land at the same time, can increase grain yields greatly. Legume-grass intercrops are known to overyield because of legume nitrogen fixation. However, many agricultural soils are deficient in phosphorus. Here we show that a new mechanism of ove...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0704591104

    authors: Li L,Li SM,Sun JH,Zhou LL,Bao XG,Zhang HG,Zhang FS

    更新日期:2007-07-03 00:00:00

  • Titanospirillum velox: a huge, speedy, sulfur-storing spirillum from Ebro Delta microbial mats.

    abstract::A long (20-30 micrometer), wide (3-5 micrometer) microbial-mat bacterium from the Ebro Delta (Tarragona, Spain) was grown in mixed culture and videographed live. Intracellular elemental sulfur globules and unique cell termini were observed in scanning-electron-microprobe and transmission-electron micrographs. A polar ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.20.11584

    authors: Guerrero R,Haselton A,Solé M,Wier A,Margulis L

    更新日期:1999-09-28 00:00:00

  • Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny.

    abstract::Cell fate determination depends in part on the establishment of specific transcriptional programs of gene expression. These programs result from the interpretation of the genomic cis-regulatory information by sequence-specific factors. Decoding this information in sequenced genomes is an important issue. Here, we deve...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1002876107

    authors: Rouault H,Mazouni K,Couturier L,Hakim V,Schweisguth F

    更新日期:2010-08-17 00:00:00

  • Allometric scaling and maximum efficiency in physiological eigen time.

    abstract::General optimization results from physics indicate that maximum efficiency of a process, in the sense of minimum overall entropy production, is achieved when the rate of entropy production is constant over time, however not in ordinary clock time but on an, in general varying, "eigen time" scale, intrinsic to the syst...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.082633699

    authors: Andresen B,Shiner JS,Uehlinger DE

    更新日期:2002-04-30 00:00:00

  • Changes in gamma-aminobutyrate type A receptor subunit mRNAs, translation product expression, and receptor function during neuronal maturation in vitro.

    abstract::The amounts of mRNAs encoding alpha 1, alpha 6, beta 2, beta 3, gamma 2, and delta subunits of gamma-aminobutyrate type A (GABAA) receptors and the gold immunolabeling density of their translation products were monitored during the growth of neonatal rat granule cells in primary culture. We investigated possible corre...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.23.10952

    authors: Zheng TM,Zhu WJ,Puia G,Vicini S,Grayson DR,Costa E,Caruncho HJ

    更新日期:1994-11-08 00:00:00

  • Critical point for Bose-Einstein condensation of excitons in graphite.

    abstract::An exciton is an electron-hole pair bound by attractive Coulomb interaction. Short-lived excitons have been detected by a variety of experimental probes in numerous contexts. An excitonic insulator, a collective state of such excitons, has been more elusive. Here, thanks to Nernst measurements in pulsed magnetic field...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2012811117

    authors: Wang J,Nie P,Li X,Zuo H,Fauqué B,Zhu Z,Behnia K

    更新日期:2020-12-01 00:00:00

  • Repair of O6-ethylguanine in DNA by a chromatin fraction from rat liver: transfer of the ethyl group to an acceptor protein.

    abstract::Incubation of O6-[3H]ethylguanine-containing DNA with a rat liver chromatin fraction resulted in a decrease in the O6-ethylguanine content of the DNA. Analysis of the products of this reaction showed that the ethyl group had been transferred from the O6-ethylguanine to a protein acceptor. When the incubation mixture w...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.11.6766

    authors: Mehta JR,Ludlum DB,Renard A,Verly WG

    更新日期:1981-11-01 00:00:00

  • Three-dimensional structure of the "long" neurotoxin from cobra venom.

    abstract::The three-dimensional structure of alpha-cobra-toxin, the "long" neurotoxin from the venom of Naja naja siamensis, has been determined at 2.8-A resolution. Crystals grown as hexagonal needles have space group P6522 with unit cell parameters a = b = 74.59 A, c = 42.89 A; one molecule per asymmetric unit. Phases were de...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.77.5.2400

    authors: Walkinshaw MD,Saenger W,Maelicke A

    更新日期:1980-05-01 00:00:00

  • Targeting cancer addiction for SALL4 by shifting its transcriptome with a pharmacologic peptide.

    abstract::Sal-like 4 (SALL4) is a nuclear factor central to the maintenance of stem cell pluripotency and is a key component in hepatocellular carcinoma, a malignancy with no effective treatment. In cancer cells, SALL4 associates with nucleosome remodeling deacetylase (NuRD) to silence tumor-suppressor genes, such as PTEN. Here...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1801253115

    authors: Liu BH,Jobichen C,Chia CSB,Chan THM,Tang JP,Chung TXY,Li J,Poulsen A,Hung AW,Koh-Stenta X,Tan YS,Verma CS,Tan HK,Wu CS,Li F,Hill J,Joy J,Yang H,Chai L,Sivaraman J,Tenen DG

    更新日期:2018-07-24 00:00:00