Drought mediates the importance of stochastic community assembly.

Abstract:

:Historically, the biodiversity and composition of species in a locality was thought to be influenced primarily by deterministic factors. In such cases, species' niches create differential responses to environmental conditions and interspecific interactions, which combine to determine that locality's biodiversity and species composition. More recently, proponents of the neutral theory have placed a premium on how stochastic factors, such as birth, death, colonization, and extinction (termed "ecological drift") influence diversity and species composition in a locality independent of their niches. Here, I develop the hypothesis that the relative importance of stochastic ecological drift and/or priority effects depend on the harshness of the ecological filter in those habitats. I established long-term experimental ponds to explore the relative importance of community assembly history and drought on patterns of community compositional similarity among ponds that were otherwise similar in their environmental conditions. I show considerable site-to-site variation in pond community composition in the absence of drought that likely resulted from a combination of stochastic ecological drift and priority effects. However, in ponds that experienced drought, I found much higher similarity among communities that likely resulted from niche-selection filtering out species from the regional pool that could not tolerate such environmental harshness. These results implicate the critical role for understanding the processes of community assembly when examining patterns of biodiversity at different spatial scales.

authors

Chase JM

doi

10.1073/pnas.0704350104

subject

Has Abstract

pub_date

2007-10-30 00:00:00

pages

17430-4

issue

44

eissn

0027-8424

issn

1091-6490

pii

0704350104

journal_volume

104

pub_type

杂志文章
  • Predicting rates of cell state change caused by stochastic fluctuations using a data-driven landscape model.

    abstract::We develop a potential landscape approach to quantitatively describe experimental data from a fibroblast cell line that exhibits a wide range of GFP expression levels under the control of the promoter for tenascin-C. Time-lapse live-cell microscopy provides data about short-term fluctuations in promoter activity, and ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1207544109

    authors: Sisan DR,Halter M,Hubbard JB,Plant AL

    更新日期:2012-11-20 00:00:00

  • Dynamic regulation of mitochondrial function by glucocorticoids.

    abstract::Glucocorticoids play an important biphasic role in modulating neural plasticity; low doses enhance neural plasticity and spatial memory behavior, whereas chronic, higher doses produce inhibition. We found that 3 independent measures of mitochondrial function-mitochondrial oxidation, membrane potential, and mitochondri...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0812671106

    authors: Du J,Wang Y,Hunter R,Wei Y,Blumenthal R,Falke C,Khairova R,Zhou R,Yuan P,Machado-Vieira R,McEwen BS,Manji HK

    更新日期:2009-03-03 00:00:00

  • Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin.

    abstract::Ubiquitylation of histone H2B at lysine 120 (H2B-Ub) plays a critical role in transcriptional elongation, chromatin conformation, as well as the regulation of specific histone H3 methylations. Herein, we report a strategy for the site-specific chemical attachment of ubiquitin to preassembled nucleosomes. This allowed ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1504483112

    authors: Holt MT,David Y,Pollock S,Tang Z,Jeon J,Kim J,Roeder RG,Muir TW

    更新日期:2015-08-18 00:00:00

  • 147Sm-143Nd systematics of Earth are inconsistent with a superchondritic Sm/Nd ratio.

    abstract::The relationship between the compositions of the Earth and chondritic meteorites is at the center of many important debates. A basic assumption in most models for the Earth's composition is that the refractory elements are present in chondritic proportions relative to each other. This assumption is now challenged by r...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1222252110

    authors: Huang S,Jacobsen SB,Mukhopadhyay S

    更新日期:2013-03-26 00:00:00

  • Fluorescence quenching: A tool for single-molecule protein-folding study.

    abstract::By using titin as a model system, we have demonstrated that fluorescence quenching can be used to study protein folding at the single molecule level. The unfolded titin molecules with multiple dye molecules attached are able to fold to the native state. In the native folded state, the fluorescence from dye molecules i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.97.26.14241

    authors: Zhuang X,Ha T,Kim HD,Centner T,Labeit S,Chu S

    更新日期:2000-12-19 00:00:00

  • Systemic administration of interleukin 2 enhances the therapeutic efficacy of dendritic cell-based tumor vaccines.

    abstract::We have reported previously that murine bone marrow-derived dendritic cells (DC) pulsed with whole tumor lysates can mediate potent antitumor immune responses both in vitro and in vivo. Because successful therapy was dependent on host immune T cells, we have now evaluated whether the systemic administration of the T c...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.5.2268

    authors: Shimizu K,Fields RC,Giedlin M,Mulé JJ

    更新日期:1999-03-02 00:00:00

  • On the mechanism of actomyosin ATPase from fast muscle.

    abstract::The labeled inorganic phosphate formed by enzymatic hydrolysis of [gamma-18O]ATP in normal water was derivatized to trimethyl phosphate and analyzed for the proportions of [18O3]Pi, [18O2]Pi, [18O1]Pi, and [18O0]Pi. The proportions observed were correlated with the kinetics of intermediate exchange by using a kinetic ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.4.2067

    authors: Midelfort CF

    更新日期:1981-04-01 00:00:00

  • Specific estrogen-induced cell proliferation of cultured Syrian hamster renal proximal tubular cells in serum-free chemically defined media.

    abstract::It has long been recognized that the renal proximal tubular epithelium of the hamster is a bona fide estrogen target tissue. The effect of estrogens on the growth of proximal tubule cell explants and dissociated single cells derived from these explant outgrowths has been studied in culture. Renal tubular cells were gr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.6.2107

    authors: Oberley TD,Lauchner LJ,Pugh TD,Gonzalez A,Goldfarb S,Li SA,Li JJ

    更新日期:1989-03-01 00:00:00

  • pH-dependent transition between delocalized and trapped valence states of a CuA center and its possible role in proton-coupled electron transfer.

    abstract::A pH-dependent transition between delocalized and trapped mixed valence states of an engineered CuA center in azurin has been investigated by UV-visible absorption and electron paramagnetic resonance spectroscopic techniques. At pH 7.0, the CuA azurin displays a typical delocalized mixed valence dinuclear [Cu(1.5).......

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0403473101

    authors: Hwang HJ,Lu Y

    更新日期:2004-08-31 00:00:00

  • Two sodium-channel genes in Drosophila: implications for channel diversity.

    abstract::We describe two Drosophila melanogaster transcription units that are highly homologous to a rat Na+-channel cDNA. They appear to encode the major subunits of two distinct Na+-channel proteins. One of these maps to the second chromosome and is identical to a Na+-channel gene whose partial sequence has been previously r...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.6.2079

    authors: Ramaswami M,Tanouye MA

    更新日期:1989-03-01 00:00:00

  • Distinguishing influence-based contagion from homophily-driven diffusion in dynamic networks.

    abstract::Node characteristics and behaviors are often correlated with the structure of social networks over time. While evidence of this type of assortative mixing and temporal clustering of behaviors among linked nodes is used to support claims of peer influence and social contagion in networks, homophily may also explain suc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0908800106

    authors: Aral S,Muchnik L,Sundararajan A

    更新日期:2009-12-22 00:00:00

  • Oleic acid content is responsible for the reduction in blood pressure induced by olive oil.

    abstract::Numerous studies have shown that high olive oil intake reduces blood pressure (BP). These positive effects of olive oil have frequently been ascribed to its minor components, such as alpha-tocopherol, polyphenols, and other phenolic compounds that are not present in other oils. However, in this study we demonstrate th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0807500105

    authors: Terés S,Barceló-Coblijn G,Benet M,Alvarez R,Bressani R,Halver JE,Escribá PV

    更新日期:2008-09-16 00:00:00

  • Down-regulation of protein kinase C protects cerebellar granule neurons in primary culture from glutamate-induced neuronal death.

    abstract::Exposing primary cultures of cerebellar granule neurons to 100 nM phorbol 12-myristate 13-acetate (PMA) for 24 hr decreases the Ca2+/phosphatidylserine/diolein-dependent protein kinase C (PKC; ATP:protein phosphotransferase, EC 2.7.1.37) by approximately 90% in the 100,000 x g supernatant and pellet fractions of neuro...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.5.1983

    authors: Favaron M,Manev H,Siman R,Bertolino M,Szekely AM,DeErausquin G,Guidotti A,Costa E

    更新日期:1990-03-01 00:00:00

  • Ubiquitylation of p53 by the APC/C inhibitor Trim39.

    abstract::Tripartite motif 39 (Trim39) is a RING domain-containing E3 ubiquitin ligase able to inhibit the anaphase-promoting complex (APC/C) directly. Through analysis of Trim39 function in p53-positive and p53-negative cells, we have found, surprisingly, that p53-positive cells lacking Trim39 could not traverse the G1/S trans...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1212047110

    authors: Zhang L,Huang NJ,Chen C,Tang W,Kornbluth S

    更新日期:2012-12-18 00:00:00

  • Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules.

    abstract::Mechanisms that enabled primitive cell membranes to self-reproduce have been discussed based on the physicochemical properties of fatty acids; however, there must be a transition to modern cell membranes composed of phospholipids [Budin I, Szostak JW (2011) Proc Natl Acad Sci USA 108:5249-5254]. Thus, a growth-divisio...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1120327109

    authors: Terasawa H,Nishimura K,Suzuki H,Matsuura T,Yomo T

    更新日期:2012-04-17 00:00:00

  • Nanopurification of silicon from 84% to 99.999% purity with a simple and scalable process.

    abstract::Silicon, with its great abundance and mature infrastructure, is a foundational material for a range of applications, such as electronics, sensors, solar cells, batteries, and thermoelectrics. These applications rely on the purification of Si to different levels. Recently, it has been shown that nanosized silicon can o...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1513012112

    authors: Zong L,Zhu B,Lu Z,Tan Y,Jin Y,Liu N,Hu Y,Gu S,Zhu J,Cui Y

    更新日期:2015-11-03 00:00:00

  • Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers.

    abstract::The 93-residue transmembrane protein CrgA in Mycobacterium tuberculosis is a central component of the divisome, a large macromolecular machine responsible for cell division. Through interactions with multiple other components including FtsZ, FtsQ, FtsI (PBPB), PBPA, and CwsA, CrgA facilitates the recruitment of the pr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1415908112

    authors: Das N,Dai J,Hung I,Rajagopalan MR,Zhou HX,Cross TA

    更新日期:2015-01-13 00:00:00

  • Induction of erythroid differentiation in murine virus infected eythroleukemia cells by highly polar compounds.

    abstract::Murine-virus-infected erythroleukemia cells cultured in a medium with dimethylsulfoxide or N,N-dimethylformamide are induced to differentiate to erythroid cells. A number of highly polar compounds have a similar effect in inducing erythroid differentiation of the virus-infected cells, as assayed by the appearance of h...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.72.3.1003

    authors: Tanaka M,Levy J,Terada M,Breslow R,Rifkind RA,Marks PA

    更新日期:1975-03-01 00:00:00

  • Human renal cell carcinoma expresses distinct binding sites for growth hormone-releasing hormone.

    abstract::Antagonists of growth hormone-releasing hormone (GHRH) inhibit the proliferation of various human cancers in vitro and in vivo by mechanisms that include apparent direct effects through specific binding sites expressed on tumors and that differ from pituitary human GHRH (hGHRH) receptors. In this study, GHRH antagonis...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.180313097

    authors: Halmos G,Schally AV,Varga JL,Plonowski A,Rekasi Z,Czompoly T

    更新日期:2000-09-12 00:00:00

  • An embedded genus-one helicoid.

    abstract::There exists a properly embedded minimal surface of genus one with a single end asymptotic to the end of the helicoid. This genus-one helicoid is constructed as the limit of a continuous one-parameter family of screw-motion invariant minimal surfaces, also asymptotic to the helicoid, that have genus equal to one in th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0508008102

    authors: Weber M,Hoffman D,Wolf M

    更新日期:2005-11-15 00:00:00

  • The wing of the enhancer-binding domain of Mu phage transposase is flexible and is essential for efficient transposition.

    abstract::A tetramer of the Mu transposase (MuA) pairs the recombination sites, cleaves the donor DNA, and joins these ends to a target DNA by strand transfer. Juxtaposition of the recombination sites is accomplished by the assembly of a stable synaptic complex of MuA protein and Mu DNA. This initial critical step is facilitate...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.3.1146

    authors: Clubb RT,Mizuuchi M,Huth JR,Omichinski JG,Savilahti H,Mizuuchi K,Clore GM,Gronenborn AM

    更新日期:1996-02-06 00:00:00

  • Nascent RNA sequencing reveals distinct features in plant transcription.

    abstract::Transcriptional regulation of gene expression is a major mechanism used by plants to confer phenotypic plasticity, and yet compared with other eukaryotes or bacteria, little is known about the design principles. We generated an extensive catalog of nascent and steady-state transcripts in Arabidopsis thaliana seedlings...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1603217113

    authors: Hetzel J,Duttke SH,Benner C,Chory J

    更新日期:2016-10-25 00:00:00

  • Modeling environmentally mediated rotavirus transmission: The role of temperature and hydrologic factors.

    abstract::Rotavirus is considered a directly transmitted disease due to its high infectivity. Environmental pathways have, therefore, largely been ignored. Rotavirus, however, persists in water sources, and both its surface water concentrations and infection incidence vary with temperature. Here, we examine the potential for wa...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章,meta分析

    doi:10.1073/pnas.1719579115

    authors: Kraay ANM,Brouwer AF,Lin N,Collender PA,Remais JV,Eisenberg JNS

    更新日期:2018-03-20 00:00:00

  • HMGA2/TET1/HOXA9 signaling pathway regulates breast cancer growth and metastasis.

    abstract::The ten-eleven translocation (TET) family of methylcytosine dioxygenases initiates demethylation of DNA and is associated with tumorigenesis in many cancers; however, the mechanism is mostly unknown. Here we identify upstream activators and downstream effectors of TET1 in breast cancer using human breast cancer cells ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1305172110

    authors: Sun M,Song CX,Huang H,Frankenberger CA,Sankarasharma D,Gomes S,Chen P,Chen J,Chada KK,He C,Rosner MR

    更新日期:2013-06-11 00:00:00

  • Proenkephalin, [Met]enkephalin, and oxytocin immunoreactivities are colocalized in bovine hypothalamic magnocellular neurons.

    abstract::The distribution of proenkephalin and [Met]enkephalin immunoreactivities in the bovine hypothalamo-neurohypophyseal system was studied by use of specific antisera. Proenkephalin and [Met]enkephalin immunoreactivities were found in magnocellular neuronal cell bodies in the dorsal part of the supraoptic nuclei and in th...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.16.5139

    authors: Vanderhaeghen JJ,Lotstra F,Liston DR,Rossier J

    更新日期:1983-08-01 00:00:00

  • Application of entropy measures derived from the ergodic theory of dynamical systems to rat locomotor behavior.

    abstract::Measures of complexity derived from ergodic theory of dynamical systems were developed and applied to an exemplary data set describing locomotor movements of rats in a bounded space. A symbolic dynamical system was obtained by partitioning the event space into equally probable partition elements, using a k-dimensional...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.2.723

    authors: Paulus MP,Geyer MA,Gold LH,Mandell AJ

    更新日期:1990-01-01 00:00:00

  • Cloning and sequence analysis of cDNA for the precursor of human growth hormone-releasing factor, somatocrinin.

    abstract::Molecular cloning has established the primary structures of two precursors of the human pancreas growth hormone-releasing factor (hpGRF-44), somatocrinin. Both polypeptides contain the sequence of hpGRF-44 flanked by basic processing sites. Furthermore, the precursors include a putative signal sequence and a carboxyl-...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.14.4311

    authors: Gubler U,Monahan JJ,Lomedico PT,Bhatt RS,Collier KJ,Hoffman BJ,Böhlen P,Esch F,Ling N,Zeytin F,Brazeau P,Poonian MS,Gage LP

    更新日期:1983-07-01 00:00:00

  • Mobilization of MHC class I molecules from late endosomes to the cell surface following activation of CD34-derived human Langerhans cells.

    abstract::Langerhans cells are a subset of dendritic cells (DCs) found in the human epidermis with unique morphological and molecular properties that enable their function as "sentinels" of the immune system. DCs are pivotal in the initiation and regulation of primary MHC class I restricted T lymphocyte immune responses and are...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.071477498

    authors: MacAry PA,Lindsay M,Scott MA,Craig JI,Luzio JP,Lehner PJ

    更新日期:2001-03-27 00:00:00

  • Hydrogenation of N over Fe{111}.

    abstract::Over the past five decades, ultra high vacuum (uhv) techniques applied to well-defined single-crystal samples (the "surface science paradigm") have transformed our understanding of fundamental surface chemistry. To translate this success to the world of realistic heterogeneous catalysis, however, requires one seriousl...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1006634107

    authors: Iyngaran P,Madden DC,Jenkins SJ,King DA

    更新日期:2011-01-18 00:00:00

  • The osmolyte xylitol reduces the salt concentration of airway surface liquid and may enhance bacterial killing.

    abstract::The thin layer of airway surface liquid (ASL) contains antimicrobial substances that kill the small numbers of bacteria that are constantly being deposited in the lungs. An increase in ASL salt concentration inhibits the activity of airway antimicrobial factors and may partially explain the pathogenesis of cystic fibr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.97.21.11614

    authors: Zabner J,Seiler MP,Launspach JL,Karp PH,Kearney WR,Look DC,Smith JJ,Welsh MJ

    更新日期:2000-10-10 00:00:00