Application of entropy measures derived from the ergodic theory of dynamical systems to rat locomotor behavior.

Abstract:

:Measures of complexity derived from ergodic theory of dynamical systems were developed and applied to an exemplary data set describing locomotor movements of rats in a bounded space. A symbolic dynamical system was obtained by partitioning the event space into equally probable partition elements, using a k-dimensional tree. The measures calculated from the symbolic sequences included the topological entropy (ht)--i.e., the rate of increase of all possible sequences with increasing sequence length--and the metric entropy (hm)--i.e., the rate of increase of all likely sequences with increasing sequence length. These measures were used to assess changes in rat locomotor behavior as recorded in the behavioral pattern monitor (BPM) that were induced by amphetamine (0.25, 0.50, 1.0, or 2.0 mg/kg) and 3,4-methylenedioxymethamphetamine (MDMA; 1.25, 2.5, 5.0, or 10.0 mg/kg). Amphetamine increased the mean activity, ht, and hm. MDMA resulted in a monotonic dose-response curve for activity but exhibited a biphasic dose response in ht and hm. In particular, some animals in the higher dose groups showed a ht in the range of the saline controls, whereas other animals exhibited a significantly reduced ht and a greater decrease in hm, suggesting that two different behavioral reactions coexist within the same higher dose range of MDMA. An important implication of our method is that, in applied ergodic measure-theoretic approaches, the partition that determines the elements of the symbolic dynamical system should not be specified a priori on abstract mathematical grounds but should be chosen relative to its significance with respect to the data set in question. Here, the animal constructs its own spatiotemporal partition in behavioral phase space.

authors

Paulus MP,Geyer MA,Gold LH,Mandell AJ

doi

10.1073/pnas.87.2.723

subject

Has Abstract

pub_date

1990-01-01 00:00:00

pages

723-7

issue

2

eissn

0027-8424

issn

1091-6490

journal_volume

87

pub_type

杂志文章
  • Galactose metabolic genes in yeast respond to a ratio of galactose and glucose.

    abstract::Natural environments are filled with multiple, often competing, signals. In contrast, biological systems are often studied in "well-controlled" environments where only a single input is varied, potentially missing important interactions between signals. Catabolite repression of galactose by glucose is one of the best-...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1418058112

    authors: Escalante-Chong R,Savir Y,Carroll SM,Ingraham JB,Wang J,Marx CJ,Springer M

    更新日期:2015-02-03 00:00:00

  • The DNA-activated protein kinase is required for the phosphorylation of replication protein A during simian virus 40 DNA replication.

    abstract::The 32-kDa subunit of replication protein A (RPA) is phosphorylated during the S phase of the cell cycle in vivo and during simian virus 40 DNA replication in vitro. To explore the functional significance of this modification, we purified a HeLa cell protein kinase that phosphorylates RPA in the presence of single-str...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.26.12520

    authors: Brush GS,Anderson CW,Kelly TJ

    更新日期:1994-12-20 00:00:00

  • Neomorphic effects of recurrent somatic mutations in Yin Yang 1 in insulin-producing adenomas.

    abstract::Insulinomas are pancreatic islet tumors that inappropriately secrete insulin, producing hypoglycemia. Exome and targeted sequencing revealed that 14 of 43 insulinomas harbored the identical somatic mutation in the DNA-binding zinc finger of the transcription factor Yin Yang 1 (YY1). Chromatin immunoprecipitation seque...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1503696112

    authors: Cromer MK,Choi M,Nelson-Williams C,Fonseca AL,Kunstman JW,Korah RM,Overton JD,Mane S,Kenney B,Malchoff CD,Stalberg P,Akerström G,Westin G,Hellman P,Carling T,Björklund P,Lifton RP

    更新日期:2015-03-31 00:00:00

  • Defective acidification of endosomes in Chinese hamster ovary cell mutants "cross-resistant" to toxins and viruses.

    abstract::Like many physiological ligands, several viruses and toxins enter mammalian cells through receptor-mediated endocytosis. Once internalized, the nucleic acids of several viruses and the toxic subunit of diphtheria toxin gain access to the cytosol of the host cell through an acidic intracellular compartment. In this rep...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.17.5315

    authors: Merion M,Schlesinger P,Brooks RM,Moehring JM,Moehring TJ,Sly WS

    更新日期:1983-09-01 00:00:00

  • Characterization of a murine type II sodium-phosphate cotransporter expressed in mammalian small intestine.

    abstract::An isoform of the mammalian renal type II Na/Pi-cotransporter is described. Homology of this isoform to described mammalian and nonmammalian type II cotransporters is between 57 and 75%. Based on major diversities at the C terminus, the new isoform is designed as type IIb Na/Pi-cotransporter. Na/Pi-cotransport mediate...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.24.14564

    authors: Hilfiker H,Hattenhauer O,Traebert M,Forster I,Murer H,Biber J

    更新日期:1998-11-24 00:00:00

  • Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states.

    abstract::Chromatin condensation plays an important role in the regulation of gene expression. Recently, it was shown that the transcriptional activation of Hoxd genes during vertebrate digit development involves modifications in 3D interactions within and around the HoxD gene cluster. This reorganization follows a global trans...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1517972112

    authors: Fabre PJ,Benke A,Joye E,Nguyen Huynh TH,Manley S,Duboule D

    更新日期:2015-11-10 00:00:00

  • Kinetic isotope effects in Ras-catalyzed GTP hydrolysis: evidence for a loose transition state.

    abstract::A remote labeling method has been developed to determine (18)O kinetic isotope effects (KIEs) in Ras-catalyzed GTP hydrolysis. Substrate mixtures consist of (13)C-depleted GTP and [(18)O,(13)C]GTP that contains (18)O at phosphoryl positions of mechanistic interest and (13)C at all carbon positions of the guanosine moi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0401675101

    authors: Du X,Black GE,Lecchi P,Abramson FP,Sprang SR

    更新日期:2004-06-15 00:00:00

  • Abundant pseudogenes for small nuclear RNAs are dispersed in the human genome.

    abstract::We have cloned and partially characterized 24 loci from the human genome which are complementary to U1, U2, or U3, the three major species of small nuclear RNA (snRNA) in HeLa cells. When compared to the known U1 (human) and U2 (rat) snRNA sequences, the DNA sequences we report here for the complementary regions from ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.2.810

    authors: Denison RA,Van Arsdell SW,Bernstein LB,Weiner AM

    更新日期:1981-02-01 00:00:00

  • Chirality of DNA trefoils: implications in intramolecular synapsis of distant DNA segments.

    abstract::We show that supercoiling of a DNA trefoil, the simplest knotted ring, perturbs differently the spatial writhe of its two chiral forms. As a consequence, the negative-noded and positive-noded DNA trefoils can be resolved by gel electrophoresis. Analysis of the chirality of trefoils produced by cyclization of two linea...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.94.5.1692

    authors: Shaw SY,Wang JC

    更新日期:1997-03-04 00:00:00

  • Formation and evolution of molecular products in α-pinene secondary organic aerosol.

    abstract::Much of our understanding of atmospheric secondary organic aerosol (SOA) formation from volatile organic compounds derives from laboratory chamber measurements, including mass yield and elemental composition. These measurements alone are insufficient to identify the chemical mechanisms of SOA production. We present he...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1517742112

    authors: Zhang X,McVay RC,Huang DD,Dalleska NF,Aumont B,Flagan RC,Seinfeld JH

    更新日期:2015-11-17 00:00:00

  • The in vitro ejection of zinc from human immunodeficiency virus (HIV) type 1 nucleocapsid protein by disulfide benzamides with cellular anti-HIV activity.

    abstract::Several disulfide benzamides have been shown to possess wide-spectrum antiretroviral activity in cell culture at low micromolar to submicromolar concentrations, inhibiting human immunodeficiency virus (HIV) type 1 (HIV-1) clinical and drug-resistant strains along with HIV-2 and simian immunodeficiency virus [Rice, W. ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.3.969

    authors: Tummino PJ,Scholten JD,Harvey PJ,Holler TP,Maloney L,Gogliotti R,Domagala J,Hupe D

    更新日期:1996-02-06 00:00:00

  • Unifying account of visual motion and position perception.

    abstract::Despite growing evidence for perceptual interactions between motion and position, no unifying framework exists to account for these two key features of our visual experience. We show that percepts of both object position and motion derive from a common object-tracking system--a system that optimally integrates sensory...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1500361112

    authors: Kwon OS,Tadin D,Knill DC

    更新日期:2015-06-30 00:00:00

  • An engineered chimeric toxin that cleaves activated mutant and wild-type RAS inhibits tumor growth.

    abstract::Despite nearly four decades of effort, broad inhibition of oncogenic RAS using small-molecule approaches has proven to be a major challenge. Here we describe the development of a pan-RAS biologic inhibitor composed of the RAS-RAP1-specific endopeptidase fused to the protein delivery machinery of diphtheria toxin. We s...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2000312117

    authors: Vidimar V,Beilhartz GL,Park M,Biancucci M,Kieffer MB,Gius DR,Melnyk RA,Satchell KJF

    更新日期:2020-07-21 00:00:00

  • Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains.

    abstract::Drosophila melanogaster Polo kinase physically interacts with, and is repressed by, the Matrimony (Mtrm) protein during oogenesis. Females heterozygous for a deletion of the mtrm gene display defects in chromosome segregation at meiosis I. However, a complete absence of Mtrm results in both meiotic catastrophe and fem...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1301690110

    authors: Bonner AM,Hughes SE,Chisholm JA,Smith SK,Slaughter BD,Unruh JR,Collins KA,Friederichs JM,Florens L,Swanson SK,Pelot MC,Miller DE,Washburn MP,Jaspersen SL,Hawley RS

    更新日期:2013-03-26 00:00:00

  • Early-life stress has persistent effects on amygdala function and development in mice and humans.

    abstract::Relatively little is known about neurobiological changes attributable to early-life stressors (e.g., orphanage rearing), even though they have been associated with a heightened risk for later psychopathology. Human neuroimaging and animal studies provide complementary insights into the neural basis of problem behavior...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1310163110

    authors: Malter Cohen M,Jing D,Yang RR,Tottenham N,Lee FS,Casey BJ

    更新日期:2013-11-05 00:00:00

  • Salt bridge integrates GPCR activation with protein trafficking.

    abstract::G protein-coupled receptors (GPCRs) play central roles in almost all physiological functions; mutations in GPCRs are responsible for more than 30 disorders. There is a great deal of information about GPCR structure but little information that directly relates structure to protein trafficking or to activation. The gona...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0914261107

    authors: Janovick JA,Conn PM

    更新日期:2010-03-02 00:00:00

  • A new isoleucine substitution of Val-20 in transthyretin tetramers selectively impairs dimer-dimer contacts and causes systemic amyloidosis.

    abstract::The most frequent form of inherited amyloidoses is associated with mutations in the transthyretin (TTR) gene coding for 127-amino acid residues of four identical, noncovalently linked subunits that form a pair of dimers in the plasma protein complex. Amyloid fibrils containing the variant and to a lesser extent the wi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.13.6302

    authors: Jenne DE,Denzel K,Blätzinger P,Winter P,Obermaier B,Linke RP,Altland K

    更新日期:1996-06-25 00:00:00

  • New mechanistic studies on the proline-catalyzed aldol reaction.

    abstract::The mechanism of the proline-catalyzed aldol reaction has stimulated considerable debate, and despite limited experimental data, at least five different mechanisms have been proposed. Complementary to recent theoretical studies we have initiated an experimental program with the goal of clarifying some of the basic mec...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0307979101

    authors: List B,Hoang L,Martin HJ

    更新日期:2004-04-20 00:00:00

  • Expression of DNA polymerase {beta} cancer-associated variants in mouse cells results in cellular transformation.

    abstract::Thirty percent of the 189 tumors studied to date express DNA polymerase beta variants. One of these variants was identified in a prostate carcinoma and is altered from isoleucine to methionine at position 260, within the hydrophobic hinge region of the protein. Another variant was identified in a colon carcinoma and i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0505166102

    authors: Sweasy JB,Lang T,Starcevic D,Sun KW,Lai CC,Dimaio D,Dalal S

    更新日期:2005-10-04 00:00:00

  • Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1.

    abstract::Shewanella species are renowned for their respiratory versatility, including their ability to respire poorly soluble substrates by using enzymatic machinery that is localized to the outside of the cell. The ability to engage in "extracellular respiration" to date has focused primarily on respiration of minerals. Here,...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0505959103

    authors: Gralnick JA,Vali H,Lies DP,Newman DK

    更新日期:2006-03-21 00:00:00

  • Subcellular localization of mineralocorticoid receptors in living cells: effects of receptor agonists and antagonists.

    abstract::Results on the subcellular localization of the mineralocorticoid receptor (MR) have been controversial. To determine the subcellular distribution and trafficking of the MR in living cells after binding of agonists and antagonists, we expressed a MR-green fluorescent protein (GFP) chimera in mammalian cells lacking end...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.6.2973

    authors: Fejes-Tóth G,Pearce D,Náray-Fejes-Tóth A

    更新日期:1998-03-17 00:00:00

  • In colorectal cancer mast cells contribute to systemic regulatory T-cell dysfunction.

    abstract::T-regulatory cells (Treg) and mast cells (MC) are abundant in colorectal cancer (CRC) tumors. Interaction between the two is known to promote immune suppression or loss of Treg functions and autoimmunity. Here, we demonstrate that in both human CRC and murine polyposis the outcome of this interaction is the generation...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0913683107

    authors: Blatner NR,Bonertz A,Beckhove P,Cheon EC,Krantz SB,Strouch M,Weitz J,Koch M,Halverson AL,Bentrem DJ,Khazaie K

    更新日期:2010-04-06 00:00:00

  • Rivers across the Siberian Arctic unearth the patterns of carbon release from thawing permafrost.

    abstract::Climate warming is expected to mobilize northern permafrost and peat organic carbon (PP-C), yet magnitudes and system specifics of even current releases are poorly constrained. While part of the PP-C will degrade at point of thaw to CO2 and CH4 to directly amplify global warming, another part will enter the fluvial ne...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1811797116

    authors: Wild B,Andersson A,Bröder L,Vonk J,Hugelius G,McClelland JW,Song W,Raymond PA,Gustafsson Ö

    更新日期:2019-05-21 00:00:00

  • Dynamics of shear-induced ATP release from red blood cells.

    abstract::Adenosine triphosphate (ATP) is a regulatory molecule for many cell functions, both for intracellular and, perhaps less well known, extracellular functions. An important example of the latter involves red blood cells (RBCs), which help regulate blood pressure by releasing ATP as a vasodilatory signaling molecule in re...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0805779105

    authors: Wan J,Ristenpart WD,Stone HA

    更新日期:2008-10-28 00:00:00

  • Limits of multifunctionality in tunable networks.

    abstract::Nature is rife with networks that are functionally optimized to propagate inputs to perform specific tasks. Whether via genetic evolution or dynamic adaptation, many networks create functionality by locally tuning interactions between nodes. Here we explore this behavior in two contexts: strain propagation in mechanic...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1806790116

    authors: Rocks JW,Ronellenfitsch H,Liu AJ,Nagel SR,Katifori E

    更新日期:2019-02-12 00:00:00

  • Sensitive kinase assay linked with phosphoproteomics for identifying direct kinase substrates.

    abstract::Our understanding of the molecular control of many disease pathologies requires the identification of direct substrates targeted by specific protein kinases. Here we describe an integrated proteomic strategy, termed kinase assay linked with phosphoproteomics, which combines a sensitive kinase reaction with endogenous ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1119418109

    authors: Xue L,Wang WH,Iliuk A,Hu L,Galan JA,Yu S,Hans M,Geahlen RL,Tao WA

    更新日期:2012-04-10 00:00:00

  • Relationship between the intra and intermolecular cross-links of collagen.

    abstract::Spontaneous cross-linking in vitro, during incubation of purified collagen in nonstriated and native type fibrils, was studied to elucidate the relationship between intra and intermolecular cross-links. In nonbanded fibrils, the aldol condensation products of two allysyl residues, previously shown to constitute the in...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.67.3.1307

    authors: Kang AH,Gross J

    更新日期:1970-11-01 00:00:00

  • Footprint of Deepwater Horizon blowout impact to deep-water coral communities.

    abstract::On April 20, 2010, the Deepwater Horizon (DWH) blowout occurred, releasing more oil than any accidental spill in history. Oil release continued for 87 d and much of the oil and gas remained in, or returned to, the deep sea. A coral community significantly impacted by the spill was discovered in late 2010 at 1,370 m de...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1403492111

    authors: Fisher CR,Hsing PY,Kaiser CL,Yoerger DR,Roberts HH,Shedd WW,Cordes EE,Shank TM,Berlet SP,Saunders MG,Larcom EA,Brooks JM

    更新日期:2014-08-12 00:00:00

  • Relationships between cortical myeloarchitecture and electrophysiological networks.

    abstract::The human brain relies upon the dynamic formation and dissolution of a hierarchy of functional networks to support ongoing cognition. However, how functional connectivities underlying such networks are supported by cortical microstructure remains poorly understood. Recent animal work has demonstrated that electrical a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1608587113

    authors: Hunt BA,Tewarie PK,Mougin OE,Geades N,Jones DK,Singh KD,Morris PG,Gowland PA,Brookes MJ

    更新日期:2016-11-22 00:00:00

  • Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains.

    abstract::Early forms of the genetic code likely generated "statistical" proteins, with similar side chains occupying the same sequence positions at different ratios. In this scenario, groups of related side chains were treated by aminoacyl-tRNA synthetases as a single molecular species until a discrimination mechanism develope...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2136794100

    authors: Yang XL,Otero FJ,Skene RJ,McRee DE,Schimmel P,Ribas de Pouplana L

    更新日期:2003-12-23 00:00:00