Abstract:
:ChIP coupled with microarray provides a powerful tool to determine in vivo binding profiling of transcription factors to deduce regulatory circuitries in mammalian cells. Aiming at improving the specificity and sensitivity of such analysis, we developed a new technology called ChIP-DSL using the DNA selection and ligation (DSL) strategy, permitting robust analysis with much reduced materials compared with standard procedures. We profiled general and sequence-specific DNA binding transcription factors using a full human genome promoter array based on the ChIP-DSL technology, revealing an unprecedented number of the estrogen receptor (ERalpha) target genes in MCF-7 cells. Coupled with gene expression profiling, we found that only a fraction of these direct ERalpha target genes were highly responsive to estrogen and that the expression of those ERalpha-bound, estrogen-inducible genes was associated with breast cancer progression in humans. This study demonstrates the power of the ChIP-DSL technology in revealing regulatory gene expression programs that have been previously invisible in the human genome.
journal_name
Proc Natl Acad Sci U S Aauthors
Kwon YS,Garcia-Bassets I,Hutt KR,Cheng CS,Jin M,Liu D,Benner C,Wang D,Ye Z,Bibikova M,Fan JB,Duan L,Glass CK,Rosenfeld MG,Fu XDdoi
10.1073/pnas.0700715104subject
Has Abstractpub_date
2007-03-20 00:00:00pages
4852-7issue
12eissn
0027-8424issn
1091-6490pii
0700715104journal_volume
104pub_type
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