Replication regions of Sinorhizobium meliloti plasmids.

Abstract:

:The replication (rep) regions of small plasmids from three Sinorhizobium meliloti strains were cloned by marker rescue. Two unique replication regions were identified, one of which was common to two different strains. Plasmid pBB83 carried a 7.2 kbp rep region from a 42 kbp plasmid, and pBB84 carried a 4.5 kbp rep region from a 36 kbp plasmid. The cloned rep regions were of different compatibility types, and were capable of displacing their parent plasmids from S. meliloti. Neither could function in a PolA- strain of Escherichia coli. The cloned replication regions were less stable in S. meliloti than their parent plasmids. The rep genes for each plasmid were localized to less than 2.5 kbp segments. Sequencing data revealed that the pBB83 Rep protein is uncommon, with partial identity to a protein encoded by a plasmid from S. meliloti GR4 [Mercado-Blanco, J., Olivares, J., 1994. The large nonsymbiotic plasmid pRmeGR4a of Rhizobium meliloti GR4 encodes a protein involved in replication that has homology with the RepC protein of Agrobacterium plasmids. Plasmid 32, 75-79]. However, the cloned DNA fragment also contains a truncated segment of the common repABC genes, suggesting that the parent plasmid contained two sets of replication genes. Other genes and an IS-element within the insert are most closely related to sequences derived from the Rhizobiaceae family, suggesting that the plasmid has a limited host range. In contrast, the pBB84 rep region contained genes similar to those associated with several broad host-range plasmids, and its Rep protein is related to that of a Pseudomonas aeruginosa broad host-range plasmid, pVS1 [Heeb, S., Itoh, Y., Nishijyo, T., Schnider, U., Keel, C., Wade, J., Walsh, U., O'Gara, F., Haas, D., 2000. Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria. Mol. Plant-Microbe Interact. 13, 232-237]. The pBB84 rep region also includes a probable origin of replication, consisting of DNA boxes flanking a series of direct repeats and an AT-rich sequence.

journal_name

Plasmid

journal_title

Plasmid

authors

Watson RJ,Heys R

doi

10.1016/j.plasmid.2005.08.003

keywords:

subject

Has Abstract

pub_date

2006-03-01 00:00:00

pages

87-98

issue

2

eissn

0147-619X

issn

1095-9890

pii

S0147-619X(05)00075-2

journal_volume

55

pub_type

杂志文章

相关文献

PLASMID文献大全
  • Complete nucleotide sequence of the self-transmissible TOL plasmid pD2RT provides new insight into arrangement of toluene catabolic plasmids.

    abstract::In the present study we report the complete nucleotide sequence of the toluene catabolic plasmid pD2RT of Pseudomonas migulae strain D2RT isolated from Baltic Sea water. The pD2RT is 129,894 base pairs in size with an average G+C content of 53.75%. A total of 135 open reading frames (ORFs) were predicted to encode pro...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2013.09.003

    authors: Jutkina J,Hansen LH,Li L,Heinaru E,Vedler E,Jõesaar M,Heinaru A

    更新日期:2013-11-01 00:00:00

  • An M13 vector library for cloning DNA with four nucleotide 3' overhangs.

    abstract::A flexible M13 vector library incorporating the BstXI site has been developed. DNA cut by any currently commercially available restriction endonuclease that generates a 4-nucleotide (nt) 3' overhang can be ligated into a specific clone of the library. The BstXI enzyme recognizes a 6-bp bipartite palindromic sequence. ...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(90)90026-9

    authors: Panchmatia FK,Cramb EM,Li V,Allen FL,Glickman BW,Waye MM

    更新日期:1990-07-01 00:00:00

  • Self-cloning in the cyanobacterium Anacystis nidulans R2: fate of a cloned gene after reintroduction.

    abstract::Functional analysis of cloned genes often makes use of complementation after introducing these genes into cells of a mutant strain. Problems with this self-cloning step in the cyanobacterium Anacystis nidulans R2 have been encountered, which were mainly due to recombinational instability of gene and vector after trans...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(85)90003-4

    authors: Kuhlemeier CJ,Hardon EM,van Arkel GA,van de Vate C

    更新日期:1985-11-01 00:00:00

  • Development of a Rhodococcus equi-Escherichia coli plasmid shuttle vector.

    abstract::Isolates of Rhodococcus equi from pneumonic foals possess an 85- or 90-kb virulence-associated plasmid. A prominent, thermoregulated surface antigen, VapA, encoded by these plasmids is thought to be important in virulence. A 135-kb fragment containing the origin of replication of R. equi strain 103 virulence-associate...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.1997.1311

    authors: Zheng H,Tkachuk-Saad O,Prescott JF

    更新日期:1997-01-01 00:00:00

  • Pheromone-inducible expression vectors for fission yeast Schizosaccharomyces pombe.

    abstract::The fission yeast Schizosaccharomyces pombe is an attractive host for heterologous gene expression. However, expression systems for industrially viable large-scale fermentations are scarce. Several inducible expression vectors for S. pombe have been reported, with the strong thiamine-repressible nmt1+ promoter or deri...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2017.11.002

    authors: Hennig S,Hornauer N,Rödel G,Ostermann K

    更新日期:2018-01-01 00:00:00

  • Sample purification improves the analysis of nonviral in vivo gene transfection.

    abstract::Nonviral gene delivery has gained a lot of interest as a promising approach for gene therapy. Despite intensive studies and much progress the outcome of nonviral vectors has remained significantly weaker than that of viral vectors. A weak transfection efficiency of nonviral gene transfection is still limiting their in...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2009.09.003

    authors: Soininen P,Hanzlíková M,Paukkunen M,Lecklin A,Männistö PT,Raasmaja A

    更新日期:2010-01-01 00:00:00

  • Plasmid deletion formation in recE4 and addB72 mutants of Bacillus subtilis.

    abstract::Plasmid deletion formation was compared in wild-type, recE4, and addB72 strains of Bacillus subtilis. Deletion frequencies in plasmid pGP1, as monitored with a penP-lacZ fusion, were low in recE4 and high in addB72, in comparison to the wild-type strain. In the wild-type and recE4 strains, deletions between directly r...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(89)90044-9

    authors: Peijnenburg AC,Breed PV,Bron S,Venema G

    更新日期:1989-05-01 00:00:00

  • A type Ib plasmid segregation machinery of the Advenella kashmirensis plasmid pBTK445.

    abstract::pBTK445 is a newly described large (∼60Kb), low-copy number, conjugative plasmid indigenous to the sulfur-chemolithoautotroph Advenella kashmirensis. Based on its minimal replication region, a shuttle vector, pBTKS was constructed which can be used for diverse Alcaligenaceae members. The construct was found to be stab...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2010.12.007

    authors: Dam B

    更新日期:2011-03-01 00:00:00

  • A series of medium and high copy number arabinose-inducible Escherichia coli expression vectors compatible with pBR322 and pACYC184.

    abstract::The original pBAD24 plasmid and the derived lower copy number (the pBAD322 series) expression vectors have been widely used in Escherichia coli, Salmonella enterica, and related bacteria. However, a flexible pBAD expression system has been available only in pMB1 (ColE1) vectors. We report a series of pBAD vectors that...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2015.03.001

    authors: Chakravartty V,Cronan JE

    更新日期:2015-09-01 00:00:00

  • Nucleotide sequence within Tn3926 confirms this as a Tn21-like transposable element and provides evidence for the origin of the mer operon carried by plasmid pKLH2.

    abstract::The DNA sequence of the resolvase gene, resolution sites, and the region between the transposition functions and the end of the mercury resistance operon of the bacterial transposon, Tn3926, is presented. The sequence of Tn3926 upstream of the resolution sites is homologous to that bordering the 11.2-kb insert of Tn21...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.1995.1008

    authors: Osbourn SE,Turner AK,Grinsted J

    更新日期:1995-01-01 00:00:00

  • Plasmid distribution and analyses in Rhodopseudomonas sphaeroides.

    abstract::Ten strains of Rhodopseudomonas sphaeroides were analyzed by agarose gel electrophoresis for plasmid DNA content and, by filter-hybridizations, for their molecular relationships. All strains examined contained at least one plasmid. Several strains carried as many as six different plasmid species with sizes ranging fro...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(84)90005-2

    authors: Fornari CS,Watkins M,Kaplan S

    更新日期:1984-01-01 00:00:00

  • An improved shuttle vector constructed for metabolic engineering research in Corynebacterium glutamicum.

    abstract::Corynebacterium glutamicum is an industrial microorganism for production of amino acids. However, the metabolic engineering in C. glutamicum has been retarded due to lack of suitable vectors. In this study, we have constructed a shuttle vector pDXW-10 which harbors a large multiple cloning site suitable for cloning mu...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2010.05.004

    authors: Xu D,Tan Y,Shi F,Wang X

    更新日期:2010-09-01 00:00:00

  • Restriction endonuclease mapping of R27 (TP117), an incompatibility group HI subgroup 1 plasmid from Salmonella typhimurium.

    abstract::A circular map of the IncHI plasmid R27 corresponding to a genome size of 182 kb was established using the restriction endonucleases ApaI, XbaI, and PstI. The map was derived from the results obtained by hybridizing individual ApaI and XbaI fragments to blotted digests of the plasmid, as well as from complete and part...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(85)90058-7

    authors: Taylor DE,Brose EC

    更新日期:1985-01-01 00:00:00

  • Bringing them together: plasmid pMV158 rolling circle replication and conjugation under an evolutionary perspective.

    abstract::Rolling circle-replicating plasmids constitute a vast family that is particularly abundant in, but not exclusive of, Gram-positive bacteria. These plasmids are constructed as cassettes that harbor genes involved in replication and its control, mobilization, resistance determinants and one or two origins of lagging str...

    journal_title:Plasmid

    pub_type: 杂志文章,评审

    doi:10.1016/j.plasmid.2014.05.004

    authors: Lorenzo-Díaz F,Fernández-López C,Garcillán-Barcia MP,Espinosa M

    更新日期:2014-07-01 00:00:00

  • Tn602: a naturally occurring relative of Tn903 with direct repeats.

    abstract::We report the characterization of Tn602, a transposon encoding resistance to kanamycin and related aminoglycosides present on the R-plasmid pGD10. Tn602 is highly homologous to the previously characterized Tn903, present on the R-plasmid R6, in that it consists of a gene for aminoglycoside-phosphotransferase-3'-I (hom...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(87)90028-x

    authors: Stibitz S,Davies JE

    更新日期:1987-05-01 00:00:00

  • High-throughput recombinant gene expression systems in Pichia pastoris using newly developed plasmid vectors.

    abstract::We describe here the construction of Gateway-compatible vectors, pBGP1-DEST and pPICZα-DEST, for rapid and convenient preparation of expression plasmids for production of secretory proteins in Pichia pastoris. Both vectors direct the synthesis of fusion proteins consisting of the N-terminal signal and pro-sequences of...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2010.08.004

    authors: Sasagawa T,Matsui M,Kobayashi Y,Otagiri M,Moriya S,Sakamoto Y,Ito Y,Lee CC,Kitamoto K,Arioka M

    更新日期:2011-01-01 00:00:00

  • Improvement of a nisin-inducible expression vector for use in lactic acid bacteria.

    abstract::The plasmid pMSP3535 is a popular vector for nisin-inducible expression of heterologous genes in lactic acid bacteria. However, the maximum protein expression level achievable with pMSP3535 is relatively low. In an effort to increase expression we modified pMSP3535 to create a high expression variant termed pMSP3535H2...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2007.05.004

    authors: Kim JH,Mills DA

    更新日期:2007-11-01 00:00:00

  • Plant expression vectors with the origin of replication of the W-type plasmid Sa.

    abstract::A new class of binary vectors has been constructed, containing the origin of replication of the W-type plasmid Sa. These vectors are designed to express foreign genes in plants under control of the TR gene 2' promoter or the promoter of a light-inducible ribulose-1,5-bisphosphate carboxylase small subunit gene of Arab...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(88)90043-1

    authors: Alliotte T,Zhu LH,Van Montagu M,Inzé D

    更新日期:1988-05-01 00:00:00

  • A new vector for heterologous gene expression in Escherichia coli with increased stability in the absence of antibiotic.

    abstract::Expression vectors for industrial production should be stable and allow tight control of protein synthesis. This is necessary to ensure plasmid transmission to daughter cells in order to achieve a stable population capable of synthesizing high amounts of the target protein. A high-copy-number plasmid, pAE, was previou...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2018.08.004

    authors: Eguia FAP,Ramos HR,Kraschowetz S,Omote D,Ramos CRR,Ho PL,Carvalho E,Gonçalves VM

    更新日期:2018-06-01 00:00:00

  • The linear plasmid SCP1 of Streptomyces coelicolor A3(2) possesses a centrally located replication origin and shows significant homology to the transposon Tn4811.

    abstract::The linear plasmid SCP1 of Streptomyces coelicolor A3(2) is one of the genetically more studied linear streptomycete replicons. Although the genetics of SCP1 and its interaction with the host chromosome have been analyzed for nearly three decades no information exists on its replication. With the help of an ordered co...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.1999.1419

    authors: Redenbach M,Bibb M,Gust B,Seitz B,Spychaj A

    更新日期:1999-11-01 00:00:00

  • Search for a novel killer toxin in yeast Pichia pastoris.

    abstract::Certain yeast strains secrete a protein toxin, which inhibits the growth of sensitive pathogens and yeasts. Studies have shown that production of the toxin is dependent on presence of linear, double-stranded DNA plasmids in the killer yeasts. In the yeast Pichia pastoris, two linear double-stranded DNA plasmids have b...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.1999.1452

    authors: Banerjee H,Verma M

    更新日期:2000-03-01 00:00:00

  • New cloning vectors with temperature-sensitive replication.

    abstract::A series of cloning vectors with conditional, temperature-sensitive replication that are selectable with ampicillin, chloramphenicol, and kanamycin has been constructed. These vectors are derivatives of a pSC101 mutant that can replicate only at low temperatures. The cloning vectors carry a number of unique restrictio...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.1998.1380

    authors: Phillips GJ

    更新日期:1999-01-01 00:00:00

  • New shuttle vectors for ectopic insertion of genes into Bacillus subtilis.

    abstract::We have constructed shuttle vectors for integration of genes via double homologous recombination into three ectopic sites on the chromosome of Bacillus subtilis. The sites of integration are the pyrD, gltA, and sacA genes located at 139 degrees, 172 degrees, and 333 degrees, respectively, on the chromosome. Integratio...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2004.01.006

    authors: Middleton R,Hofmeister A

    更新日期:2004-05-01 00:00:00

  • Characterization of the cryptic plasmid pCC1 from Corynebacterium callunae and its use for vector construction.

    abstract::The complete nucleotide sequence of the cryptic plasmid pCC1 from Corynebacterium callunae (4109 bp) was determined. DNA sequence analysis revealed five open reading frames longer than 200 bp. One of the deduced polypeptides showed homology with the Rep proteins encoded by plasmids of the pIJ101/pJV1 family of plasmid...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2003.09.002

    authors: Venkova-Canova T,Pátek M,Nesvera J

    更新日期:2004-01-01 00:00:00

  • Nucleotide sequence analysis of pRS2 and pRS3, two small cryptic plasmids from Oenococcus oeni.

    abstract::Nucleotide sequence analysis of two cryptic plasmids, pRS2 (2544 bp) and pRS3 (3948 bp), from Oenococcus oeni revealed the presence in both of three major open reading frames with significant similarity to other small cryptic plasmids from O. oeni. The results suggest that those plasmids could be separated into two su...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.2001.1537

    authors: Mesas JM,Rodríguez MC,Alegre MT

    更新日期:2001-09-01 00:00:00

  • Transient expression system to measure the efficiency of vaccinia promoter regions.

    abstract::A transient expression system has been developed to compare the relative efficiency of expression of various vaccinia virus DNA sequences containing transcriptional regulatory elements. A plasmid vector was constructed containing both the Escherichia coli galactokinase gene (galK) and the guanine phosphoribosyltransfe...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(87)90074-6

    authors: Shepard B,Panicali D,Huang C

    更新日期:1987-07-01 00:00:00

  • Complete sequence of Enterococcus faecium pVEF3 and the detection of an omega-epsilon-zeta toxin-antitoxin module and an ABC transporter.

    abstract::Glycopeptide resistant Enterococcus faecium (GREF) persists on Norwegian poultry farms despite the ban on the growth promoter avoparcin. The biological basis for long-term persistence of avoparcin resistance is not fully understood. This study presents the complete DNA sequence of the E. faecium R-plasmid pVEF3 and fu...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/j.plasmid.2008.04.002

    authors: Sletvold H,Johnsen PJ,Hamre I,Simonsen GS,Sundsfjord A,Nielsen KM

    更新日期:2008-07-01 00:00:00

  • CoIV plasmids pCoIV-B188 and pCoIV-K30: genetic maps according to restriction enzyme sites and landmark phenotypic characteristics.

    abstract::The CoIV plasmids are large virulence plasmids of the incompatibility group IncFI. We have obtained the genetic maps of two of the most studied CoIV plasmids, pCoIV-B188 and pCoIV-K30, according to restriction enzyme sites and landmark phenotypic characteristics such as colicin V, the aerobactin iron uptake system, th...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1016/0147-619x(89)90007-3

    authors: Waters VL,Perez-Casal JF,Crosa JH

    更新日期:1989-11-01 00:00:00

  • Suggestions as to quantitative measurements of plasmid loss.

    abstract::Suggestions are made for the estimation of plasmid loss rates in bacterial populations that multiply by binary fission. The plasmid loss rate is defined as the probability of a division of a plasmid-carrying individual giving birth to one plasmid-free and one plasmid-carrying daughter cell. The unit of time is consequ...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.1996.0042

    authors: Boe L,Rasmussen KV

    更新日期:1996-11-01 00:00:00

  • Construction and properties of cloning vectors based on a 7.2-kb Rhizobium meliloti cryptic plasmid.

    abstract::Cloning vectors (pFD1001, pFD1192, pFD1194, and pFD1212) were constructed by extension of the host range of a 7.2-kb Rhizobium meliloti cryptic plasmid (pRM1132f) with the ColE1-based plasmids, pBR322, pACYC177, pACYC 184, pSUP301, or pHC179; mobilization was facilitated by introduction of the oriT region from pRK2, a...

    journal_title:Plasmid

    pub_type: 杂志文章

    doi:10.1006/plas.1995.1024

    authors: Froissard D,Bromfield ES,Whitwill S,Barran LR

    更新日期:1995-05-01 00:00:00