From mRNA to tumor suppressor.

Abstract:

:The combination of inhibition of RNA degradation and comparative genomic scanning is a powerful new method for detecting gene disruptions. The utility of the method is well-illustrated by a series of observations linking the ephrin receptor EPHB2 to prostate cancer.

journal_name

Nat Genet

journal_title

Nature genetics

authors

Mercola D,Welsh J

doi

10.1038/ng0904-937

keywords:

subject

Has Abstract

pub_date

2004-09-01 00:00:00

pages

937-8

issue

9

eissn

1061-4036

issn

1546-1718

pii

ng0904-937

journal_volume

36

pub_type

评论,新闻
  • Mutation of the PAX2 gene in a family with optic nerve colobomas, renal anomalies and vesicoureteral reflux.

    abstract::Paired box (PAX) genes play a critical role in human development and disease. The PAX2 gene is expressed in primitive cells of the kidney, ureter, eye, ear and central nervous system. We have conducted a mutational analysis of PAX2 in a family with optic nerve colobomas, renal hypoplasia, mild proteinuria and vesicour...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0495-358

    authors: Sanyanusin P,Schimmenti LA,McNoe LA,Ward TA,Pierpont ME,Sullivan MJ,Dobyns WB,Eccles MR

    更新日期:1995-04-01 00:00:00

  • Correcting CRISPR for copy number.

    abstract::The CRISPR-Cas9 system enables global screens of gene function with high sensitivity and specificity, but off-target effects have been reported for CRISPR guide RNAs targeting genes that are amplified at high copy number. A new study describes a computational approach to correct for this copy number effect, increasing...

    journal_title:Nature genetics

    pub_type: 评论,杂志文章

    doi:10.1038/ng.3994

    authors: Shen JP,Ideker T

    更新日期:2017-11-29 00:00:00

  • Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.

    abstract::We performed a meta-analysis of 14 genome-wide association studies of coronary artery disease (CAD) comprising 22,233 individuals with CAD (cases) and 64,762 controls of European descent followed by genotyping of top association signals in 56,682 additional individuals. This analysis identified 13 loci newly associate...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/ng.784

    authors: Schunkert H,König IR,Kathiresan S,Reilly MP,Assimes TL,Holm H,Preuss M,Stewart AF,Barbalic M,Gieger C,Absher D,Aherrahrou Z,Allayee H,Altshuler D,Anand SS,Andersen K,Anderson JL,Ardissino D,Ball SG,Balmforth AJ,Ba

    更新日期:2011-03-06 00:00:00

  • Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning.

    abstract::Therapeutic cloning, whereby somatic cell nuclear transfer (SCNT) is used to generate patient-specific embryonic stem cells (ESCs) from blastocysts cloned by nuclear transfer (ntESCs), holds great promise for the treatment of many human diseases. ntESCs have been derived in mice and cattle, but thus far there are no c...

    journal_title:Nature genetics

    pub_type: 杂志文章,评审

    doi:10.1038/ng1973

    authors: Yang X,Smith SL,Tian XC,Lewin HA,Renard JP,Wakayama T

    更新日期:2007-03-01 00:00:00

  • Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk.

    abstract::Key challenges for human genetics, precision medicine and evolutionary biology include deciphering the regulatory code of gene expression and understanding the transcriptional effects of genome variation. However, this is extremely difficult because of the enormous scale of the noncoding mutation space. We developed a...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0160-6

    authors: Zhou J,Theesfeld CL,Yao K,Chen KM,Wong AK,Troyanskaya OG

    更新日期:2018-08-01 00:00:00

  • Canalization of development by microRNAs.

    abstract::Animal development is an extremely robust process resulting in stereotyped outcomes. Canalization is a design principle wherein developmental pathways are stabilized to increase phenotypic reproducibility. Recent revelations into microRNA (miRNA) function suggest that miRNAs act as key players in canalizing genetic pr...

    journal_title:Nature genetics

    pub_type: 杂志文章,评审

    doi:10.1038/ng1803

    authors: Hornstein E,Shomron N

    更新日期:2006-06-01 00:00:00

  • The roles of MAD1, MAD2 and MAD3 in meiotic progression and the segregation of nonexchange chromosomes.

    abstract::Errors in meiotic chromosome segregation are the leading cause of spontaneous abortions and birth defects. In humans, chromosomes that fail to experience crossovers (or exchanges) are error-prone, more likely than exchange chromosomes to mis-segregate in meiosis. We used a yeast model to investigate the mechanisms tha...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1588

    authors: Cheslock PS,Kemp BJ,Boumil RM,Dawson DS

    更新日期:2005-07-01 00:00:00

  • Human Genome Variation 2006: emerging views on structural variation and large-scale SNP analysis.

    abstract::The eighth annual Human Genome Variation Meeting was held in September 2006 in the Hong Kong Special Administrative Region, China. The meeting highlighted recent advances in characterization of genetic variation, including genome-wide association studies and structural variation. ...

    journal_title:Nature genetics

    pub_type:

    doi:10.1038/ng0207-153

    authors: Abecasis G,Tam PK,Bustamante CD,Ostrander EA,Scherer SW,Chanock SJ,Kwok PY,Brookes AJ

    更新日期:2007-02-01 00:00:00

  • Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.

    abstract::The approach to annotating a genome critically affects the number and accuracy of genes identified in the genome sequence. Genome annotation based on stringent gene identification is prone to underestimate the complement of genes encoded in a genome. In contrast, over-prediction of putative genes followed by exhaustiv...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/85922

    authors: Gopal S,Schroeder M,Pieper U,Sczyrba A,Aytekin-Kurban G,Bekiranov S,Fajardo JE,Eswar N,Sanchez R,Sali A,Gaasterland T

    更新日期:2001-03-01 00:00:00

  • Lipid transport and human brain development.

    abstract::How the human brain rapidly builds up its lipid content during brain growth and maintains its lipids in adulthood has remained elusive. Two new studies show that inactivating mutations in MFSD2A, known to be expressed specifically at the blood-brain barrier, lead to microcephaly, thereby offering a simple and surprisi...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3348

    authors: Betsholtz C

    更新日期:2015-07-01 00:00:00

  • Evidence for co-evolution of gene order and recombination rate.

    abstract::There is increasing evidence in eukaryotic genomes that gene order is not random, even allowing for tandem duplication. Notably, in numerous genomes, genes of similar expression tend to be clustered. Are there other reasons for clustering of functionally similar genes? If genes are linked to enable genetic, rather tha...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1111

    authors: Pál C,Hurst LD

    更新日期:2003-03-01 00:00:00

  • Physical and neurobehavioral determinants of reproductive onset and success.

    abstract::The ages of puberty, first sexual intercourse and first birth signify the onset of reproductive ability, behavior and success, respectively. In a genome-wide association study of 125,667 UK Biobank participants, we identify 38 loci associated (P < 5 × 10(-8)) with age at first sexual intercourse. These findings were t...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3551

    authors: Day FR,Helgason H,Chasman DI,Rose LM,Loh PR,Scott RA,Helgason A,Kong A,Masson G,Magnusson OT,Gudbjartsson D,Thorsteinsdottir U,Buring JE,Ridker PM,Sulem P,Stefansson K,Ong KK,Perry JRB

    更新日期:2016-06-01 00:00:00

  • Mutations in the fibroblast growth factor receptor 2 gene cause Crouzon syndrome.

    abstract::Crouzon syndrome is an autosomal dominant condition causing premature fusion of the cranial sutures (craniosynostosis) and maps to chromosome 10q25-q26. We now present evidence that mutations in the fibroblast growth factor receptor 2 gene (FGFR2) cause Crouzon syndrome. We found SSCP variations in the B exon of FGFR2...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0994-98

    authors: Reardon W,Winter RM,Rutland P,Pulleyn LJ,Jones BM,Malcolm S

    更新日期:1994-09-01 00:00:00

  • Embryonic retinoic acid synthesis is essential for early mouse post-implantation development.

    abstract::A number of studies have suggested that the active derivative of vitamin A, retinoic acid (RA), may be important for early development of mammalian embryos. Severe vitamin A deprivation in rodents results in maternal infertility, precluding a thorough investigation of the role of RA during embryogenesis. Here we show ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/7788

    authors: Niederreither K,Subbarayan V,Dollé P,Chambon P

    更新日期:1999-04-01 00:00:00

  • A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.

    abstract::To identify new genetic risk factors for cervical cancer, we conducted a genome-wide association study in the Han Chinese population. The initial discovery set included 1,364 individuals with cervical cancer (cases) and 3,028 female controls, and we selected a 'stringently matched samples' subset (829 cases and 990 co...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2687

    authors: Shi Y,Li L,Hu Z,Li S,Wang S,Liu J,Wu C,He L,Zhou J,Li Z,Hu T,Chen Y,Jia Y,Wang S,Wu L,Cheng X,Yang Z,Yang R,Li X,Huang K,Zhang Q,Zhou H,Tang F,Chen Z,Shen J,Jiang J,Ding H,Xing H,Zhang S,Qu P,S

    更新日期:2013-08-01 00:00:00

  • Thromboxane synthase mutations in an increased bone density disorder (Ghosal syndrome).

    abstract::Studying consanguineous families with Ghosal hematodiaphyseal dysplasia syndrome (GHDD), a disorder of increased bone density, we identified mutations in TBXAS1, which encodes thromboxane synthase (TXAS). TXAS, an enzyme of the arachidonic acid cascade, produces thromboxane A(2) (TXA(2)). Platelets from subjects with ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2007.66

    authors: Geneviève D,Proulle V,Isidor B,Bellais S,Serre V,Djouadi F,Picard C,Vignon-Savoye C,Bader-Meunier B,Blanche S,de Vernejoul MC,Legeai-Mallet L,Fischer AM,Le Merrer M,Dreyfus M,Gaussem P,Munnich A,Cormier-Daire V

    更新日期:2008-03-01 00:00:00

  • Homozygous HOXA1 mutations disrupt human brainstem, inner ear, cardiovascular and cognitive development.

    abstract::We identified homozygous truncating mutations in HOXA1 in three genetically isolated human populations. The resulting phenotype includes horizontal gaze abnormalities, deafness, facial weakness, hypoventilation, vascular malformations of the internal carotid arteries and cardiac outflow tract, mental retardation and a...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1636

    authors: Tischfield MA,Bosley TM,Salih MA,Alorainy IA,Sener EC,Nester MJ,Oystreck DT,Chan WM,Andrews C,Erickson RP,Engle EC

    更新日期:2005-10-01 00:00:00

  • Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples.

    abstract::Recent research has uncovered an important role for de novo variation in neurodevelopmental disorders. Using aggregated data from 9,246 families with autism spectrum disorder, intellectual disability, or developmental delay, we found that ∼1/3 of de novo variants are independently present as standing variation in the ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3789

    authors: Kosmicki JA,Samocha KE,Howrigan DP,Sanders SJ,Slowikowski K,Lek M,Karczewski KJ,Cutler DJ,Devlin B,Roeder K,Buxbaum JD,Neale BM,MacArthur DG,Wall DP,Robinson EB,Daly MJ

    更新日期:2017-04-01 00:00:00

  • Mitochondrial aspartyl-tRNA synthetase deficiency causes leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation.

    abstract::Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation (LBSL) has recently been defined based on a highly characteristic constellation of abnormalities observed by magnetic resonance imaging and spectroscopy. LBSL is an autosomal recessive disease, most often manifesting in early childho...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng2013

    authors: Scheper GC,van der Klok T,van Andel RJ,van Berkel CG,Sissler M,Smet J,Muravina TI,Serkov SV,Uziel G,Bugiani M,Schiffmann R,Krägeloh-Mann I,Smeitink JA,Florentz C,Van Coster R,Pronk JC,van der Knaap MS

    更新日期:2007-04-01 00:00:00

  • Genomic features of bacterial adaptation to plants.

    abstract::Plants intimately associate with diverse bacteria. Plant-associated bacteria have ostensibly evolved genes that enable them to adapt to plant environments. However, the identities of such genes are mostly unknown, and their functions are poorly characterized. We sequenced 484 genomes of bacterial isolates from roots o...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-017-0012-9

    authors: Levy A,Salas Gonzalez I,Mittelviefhaus M,Clingenpeel S,Herrera Paredes S,Miao J,Wang K,Devescovi G,Stillman K,Monteiro F,Rangel Alvarez B,Lundberg DS,Lu TY,Lebeis S,Jin Z,McDonald M,Klein AP,Feltcher ME,Rio TG,Grant

    更新日期:2017-12-18 00:00:00

  • GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.

    abstract::Genome-wide association studies (GWAS) have identified four susceptibility loci for epithelial ovarian cancer (EOC), with another two suggestive loci reaching near genome-wide significance. We pooled data from a GWAS conducted in North America with another GWAS from the UK. We selected the top 24,551 SNPs for inclusio...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2564

    authors: Pharoah PD,Tsai YY,Ramus SJ,Phelan CM,Goode EL,Lawrenson K,Buckley M,Fridley BL,Tyrer JP,Shen H,Weber R,Karevan R,Larson MC,Song H,Tessier DC,Bacot F,Vincent D,Cunningham JM,Dennis J,Dicks E,Australian Cancer Stud

    更新日期:2013-04-01 00:00:00

  • Indian hedgehog is a major mediator of progesterone signaling in the mouse uterus.

    abstract::The hedgehog family of morphogens are regulators of cell proliferation, differentiation and cell-cell communication. These morphogens have been shown to have important roles in organogenesis, spermatogenesis, stem cell maintenance and oncogenesis. Indian hedgehog (encoded by Ihh) has been shown to be expressed in the ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1874

    authors: Lee K,Jeong J,Kwak I,Yu CT,Lanske B,Soegiarto DW,Toftgard R,Tsai MJ,Tsai S,Lydon JP,DeMayo FJ

    更新日期:2006-10-01 00:00:00

  • Recurrent somatic mutations in ACVR1 in pediatric midline high-grade astrocytoma.

    abstract::Pediatric midline high-grade astrocytomas (mHGAs) are incurable with few treatment targets identified. Most tumors harbor mutations encoding p.Lys27Met in histone H3 variants. In 40 treatment-naive mHGAs, 39 analyzed by whole-exome sequencing, we find additional somatic mutations specific to tumor location. Gain-of-fu...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2950

    authors: Fontebasso AM,Papillon-Cavanagh S,Schwartzentruber J,Nikbakht H,Gerges N,Fiset PO,Bechet D,Faury D,De Jay N,Ramkissoon LA,Corcoran A,Jones DT,Sturm D,Johann P,Tomita T,Goldman S,Nagib M,Bendel A,Goumnerova L,Bowers

    更新日期:2014-05-01 00:00:00

  • A human homologue of the Drosophila eyes absent gene underlies branchio-oto-renal (BOR) syndrome and identifies a novel gene family.

    abstract::A candidate gene for Branchio-Oto-Renal (BOR) syndrome was identified at chromosome 8q13.3 by positional cloning and shown to underlie the disease. This gene is a human homologue of the Drosophila eyes absent gene (eya), and was therefore called EYA1. A highly conserved 271-amino acid C-terminal region was also found ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0297-157

    authors: Abdelhak S,Kalatzis V,Heilig R,Compain S,Samson D,Vincent C,Weil D,Cruaud C,Sahly I,Leibovici M,Bitner-Glindzicz M,Francis M,Lacombe D,Vigneron J,Charachon R,Boven K,Bedbeder P,Van Regemorter N,Weissenbach J,Petit C

    更新日期:1997-02-01 00:00:00

  • Molecular basis of Thomsen's disease (autosomal dominant myotonia congenita).

    abstract::Thomsen's disease (autosomal dominant myotonia congenita) has recently been linked to chromosome 7q35 in the region of the human skeletal muscle chloride channel gene (HUMCLC). Single strand conformation polymorphism analysis (SSCP) was used to screen DNA from members of four unrelated pedigrees with this disorder for...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0493-305

    authors: George AL Jr,Crackower MA,Abdalla JA,Hudson AJ,Ebers GC

    更新日期:1993-04-01 00:00:00

  • Mutations in the gene encoding lamin A/C cause autosomal dominant Emery-Dreifuss muscular dystrophy.

    abstract::Emery-Dreifuss muscular dystrophy (EDMD) is characterized by early contractures of elbows and Achilles tendons, slowly progressive muscle wasting and weakness, and a cardiomyopathy with conduction blocks which is life-threatening. Two modes of inheritance exist, X-linked (OMIM 310300) and autosomal dominant (EDMD-AD; ...

    journal_title:Nature genetics

    pub_type: 临床试验,杂志文章

    doi:10.1038/6799

    authors: Bonne G,Di Barletta MR,Varnous S,Bécane HM,Hammouda EH,Merlini L,Muntoni F,Greenberg CR,Gary F,Urtizberea JA,Duboc D,Fardeau M,Toniolo D,Schwartz K

    更新日期:1999-03-01 00:00:00

  • Meta-analysis of gene-level tests for rare variant association.

    abstract::The majority of reported complex disease associations for common genetic variants have been identified through meta-analysis, a powerful approach that enables the use of large sample sizes while protecting against common artifacts due to population structure and repeated small-sample analyses sharing individual-level ...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/ng.2852

    authors: Liu DJ,Peloso GM,Zhan X,Holmen OL,Zawistowski M,Feng S,Nikpay M,Auer PL,Goel A,Zhang H,Peters U,Farrall M,Orho-Melander M,Kooperberg C,McPherson R,Watkins H,Willer CJ,Hveem K,Melander O,Kathiresan S,Abecasis GR

    更新日期:2014-02-01 00:00:00

  • The parentage of a classic wine grape, Cabernet Sauvignon.

    abstract::The world's great wines are produced from a relatively small number of classic European cultivars of Vitis vinifera L Most are thought to be centuries old and their origins have long been the subject of speculation. Among the most prominent of these cultivars is Cabernet Sauvignon, described as "the world's most renow...

    journal_title:Nature genetics

    pub_type: 历史文章,杂志文章

    doi:10.1038/ng0597-84

    authors: Bowers JE,Meredith CP

    更新日期:1997-05-01 00:00:00

  • Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.

    abstract::Type 1 diabetes (T1D) is a common autoimmune disorder that arises from the action of multiple genetic and environmental risk factors. We report the findings of a genome-wide association study of T1D, combined in a meta-analysis with two previously published studies. The total sample set included 7,514 cases and 9,045 ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.381

    authors: Barrett JC,Clayton DG,Concannon P,Akolkar B,Cooper JD,Erlich HA,Julier C,Morahan G,Nerup J,Nierras C,Plagnol V,Pociot F,Schuilenburg H,Smyth DJ,Stevens H,Todd JA,Walker NM,Rich SS,Type 1 Diabetes Genetics Consortium.

    更新日期:2009-06-01 00:00:00

  • Emergence of scarlet fever Streptococcus pyogenes emm12 clones in Hong Kong is associated with toxin acquisition and multidrug resistance.

    abstract::A scarlet fever outbreak began in mainland China and Hong Kong in 2011 (refs. 1-6). Macrolide- and tetracycline-resistant Streptococcus pyogenes emm12 isolates represent the majority of clinical cases. Recently, we identified two mobile genetic elements that were closely associated with emm12 outbreak isolates: the in...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3147

    authors: Davies MR,Holden MT,Coupland P,Chen JH,Venturini C,Barnett TC,Zakour NL,Tse H,Dougan G,Yuen KY,Walker MJ

    更新日期:2015-01-01 00:00:00