Paenibacillus chinjuensis sp. nov., a novel exopolysaccharide-producing bacterium.

Abstract:

:A novel exopolysaccharide-producing bacterium (WN9T) was isolated from Chinju, Korea, and was identified as a member of the genus Paenibacillus on the basis of phenotypic characteristics and phylogenetic inference based on 16S rDNA sequence. This organism is a facultatively anaerobic, endospore-forming rod. The diamino acid found in the peptidoglycan is meso-diaminopimelic acid. The predominant menaquinone is MK-7. The major cellular fatty acid is anteiso-C15:0. The G+C content is 53 mol%. The phylogenetic tree shows that strain WN9T falls within the radiation of a cluster comprising the Paenibacillus species. The levels of 16S rDNA similarity between strain WN9T and the type strains of validly described Paenibacillus species are 92.1-95.8%. Strain WN9T is clearly distinguishable from some phylogenetically related Paenibacillus species on the basis of DNA-DNA relatedness data and phenotypic characters. Therefore, on the basis of these data, a novel species of the genus Paenibacillus, Paenibacillus chinjuensis sp. nov., is proposed. The type strain is strain WN9T (= KCTC 8951PT = JCM 10939T).

authors

Yoon JH,Seo WT,Shin YK,Kho YH,Kang KH,Park YH

doi

10.1099/00207713-52-2-415

keywords:

subject

Has Abstract

pub_date

2002-03-01 00:00:00

pages

415-421

issue

Pt 2

eissn

1466-5026

issn

1466-5034

journal_volume

52

pub_type

杂志文章
  • The phylogenetic position of enteromonads: a challenge for the present models of diplomonad evolution.

    abstract::Unikaryotic enteromonads and diplokaryotic diplomonads have been regarded as closely related protozoan groups. It has been proposed that diplomonads originated within enteromonads in a single event of karyomastigont duplication. This paper presents the first study to address these questions using molecular phylogeneti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63542-0

    authors: Kolisko M,Cepicka I,Hampl V,Kulda J,Flegr J

    更新日期:2005-07-01 00:00:00

  • Paenochrobactrum pullorum sp. nov. isolated from a chicken.

    abstract::A Gram-stain-negative, rod-shaped, oxidase-positive, non-spore-forming, non-motile bacterium (strain 280(T)) isolated from a chicken was studied for its taxonomic allocation. 16S rRNA gene sequence analyses clearly allocated the isolate in the genus Paenochrobactrum group with a 16S rRNA gene sequence similarity of 98...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.061101-0

    authors: Kämpfer P,Poppel MT,Wilharm G,Glaeser SP,Busse HJ

    更新日期:2014-05-01 00:00:00

  • Streptomyces cheonanensis sp. nov., a novel streptomycete with antifungal activity.

    abstract::Actinomycete strain VC-A46T, which exhibits antifungal activity, was isolated from a soil sample collected from Cheonan, Korea. The strain was determined to belong to the genus Streptomyces, based on its morphological and chemotaxonomic characteristics. The cell wall of this strain contained ll-diaminopimelic acid. Th...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63816-0

    authors: Kim HJ,Lee SC,Hwang BK

    更新日期:2006-02-01 00:00:00

  • Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent.

    abstract::A novel anaerobic, heterotrophic thermophile was isolated from a deep-sea hydrothermal vent chimney at the Suiyo Seamount in the Izu-Bonin Arc, Japan. The cells were bent, flexible rods, with a single polar flagellum. Growth was observed between 40 and 70 degrees C (optimum temperature: 60-65 degrees C; doubling time,...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02479-0

    authors: Takai K,Kobayashi H,Nealson KH,Horikoshi K

    更新日期:2003-05-01 00:00:00

  • Taxonomic problems arising in the genera Haloterrigena and Natrinema.

    abstract::Data currently available on members of the genera Haloterrigena and Natrinema suggest that some strains of the species Haloterrigena turkmenica that have been shown by DNA-DNA hybridization to belong to this species show a high degree of 16S rDNA sequence similarity to members of the genus NATRINEMA: However, closer e...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 评论,杂志文章

    doi:10.1099/ijs.0.02529-0

    authors: Tindall BJ

    更新日期:2003-09-01 00:00:00

  • Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland.

    abstract::Peatlands are important sources of CH(4) emissions to the atmosphere and molecular surveys have identified a diverse, but mainly uncultured, euryarchaeal community in them. Characterization of a strain, E1-9c(T), associated with uncultured group E1, from a minerotrophic fen is reported. Cells were regular cocci, usual...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.006890-0

    authors: Cadillo-Quiroz H,Yavitt JB,Zinder SH

    更新日期:2009-05-01 00:00:00

  • Phylogenetic analysis of the genus Pediococcus, including Pediococcus claussenii sp. nov., a novel lactic acid bacterium isolated from beer.

    abstract::Pediococci are found in foods and on plants and as beer-spoilage agents. The goal of the present study was to use the DNA sequences of the first three variable regions of the 165 rRNA gene, the 16S-23S rRNA internally transcribed spacer region sequence and approximately a third of the 60 kDa heat-shock protein gene to...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-6-2003

    authors: Dobson CM,Deneer H,Lee S,Hemmingsen S,Glaze S,Ziola B

    更新日期:2002-11-01 00:00:00

  • Phylogenetic analysis of gastric and enterohepatic Helicobacter species based on partial HSP60 gene sequences.

    abstract::Analysis of 16S rRNA gene sequences has been the method generally used to study the evolution and phylogeny of bacteria. Phylogenetic analysis of the 16S rRNA gene has shown the position of the genus Helicobacter in the epsilon-subclass of the Proteobacteria. Because 16S rRNA-based phylogeny does not always correspond...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02839-0

    authors: Mikkonen TP,Kärenlampi RI,Hänninen ML

    更新日期:2004-05-01 00:00:00

  • Colwellia sediminilitoris sp. nov., isolated from a tidal flat.

    abstract::A Gram-stain-negative, aerobic, motile and rod-shaped or ovoid bacterial strain, designated YSM-23T, was isolated from a tidal flat on the South Sea in South Korea, and subjected to a polyphasic taxonomic study. Strain YSM-23T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 1.0-2.0 % (w/v) NaCl. The phyl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001183

    authors: Park S,Jung YT,Yoon JH

    更新日期:2016-09-01 00:00:00

  • Fervidicola ferrireducens gen. nov., sp. nov., a thermophilic anaerobic bacterium from geothermal waters of the Great Artesian Basin, Australia.

    abstract::A strictly anaerobic, thermophilic bacterium, designated strain Y170(T), was isolated from a microbial mat colonizing thermal waters of a run-off channel created by the free-flowing waters of a Great Artesian Basin (GAB) bore well (New Lorne bore; registered number 17263). Cells of strain Y170(T) were slightly curved ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.004200-0

    authors: Ogg CD,Patel BK

    更新日期:2009-05-01 00:00:00

  • Lactobacillus cypricasei Lawson et al. 2001 is a later heterotypic synonym of Lactobacillus acidipiscis Tanasupawat et al. 2000.

    abstract::The applicability of a multilocus sequence analysis (MLSA)-based identification system for lactobacilli was evaluated. Two housekeeping genes that code for the phenylalanyl-tRNA synthase alpha-subunit (pheS) and RNA polymerase alpha-subunit (rpoA) were sequenced and analysed for members of the Lactobacillus salivarius...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64229-0

    authors: Naser SM,Vancanneyt M,Hoste B,Snauwaert C,Swings J

    更新日期:2006-07-01 00:00:00

  • Halorubrum lipolyticum sp. nov. and Halorubrum aidingense sp. nov., isolated from two salt lakes in Xin-Jiang, China.

    abstract::Two extremely halophilic archaea, strains 9-3(T) and 31-hong(T), were isolated from Aibi salt lake and Aiding salt lake in Xin-Jiang, China. Their morphology, physiology, biochemical features, polar lipid compositions and 16S rRNA gene sequences were characterized in order to elucidate their taxonomic status. The resu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64305-0

    authors: Cui HL,Tohty D,Zhou PJ,Liu SJ

    更新日期:2006-07-01 00:00:00

  • Paenibacillus darwinianus sp. nov., isolated from gamma-irradiated Antarctic soil.

    abstract::A novel bacterium, strain Br(T), was isolated from gamma-irradiated soils of the Britannia drift, Lake Wellman Region, Antarctica. This isolate was rod-shaped, endospore forming, Gram-stain-variable, catalase-positive, oxidase-negative and strictly aerobic. Cells possessed a monotrichous flagellum. Optimal growth was ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.056697-0

    authors: Dsouza M,Taylor MW,Ryan J,MacKenzie A,Lagutin K,Anderson RF,Turner SJ,Aislabie J

    更新日期:2014-04-01 00:00:00

  • Bacillus odysseyi sp. nov., a round-spore-forming bacillus isolated from the Mars Odyssey spacecraft.

    abstract::A round-spore-forming Bacillus species that produces an exosporium was isolated from the surface of the Mars Odyssey spacecraft. This novel species has been characterized on the basis of phenotypic traits, 16S rDNA sequence analysis and DNA-DNA hybridization. According to the results of these analyses, this strain bel...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02747-0

    authors: Duc MT,Satomi M,Venkateswaran K

    更新日期:2004-01-01 00:00:00

  • Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean.

    abstract::A novel marine bacterial strain, PV-4(T), isolated from a microbial mat located at a hydrothermal vent of Loihi Seamount in the Pacific Ocean, has been characterized. This micro-organism is orangey in colour, Gram-negative, polarly flagellated, facultatively anaerobic and psychrotolerant (temperature range, 0-42 degre...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64354-0

    authors: Gao H,Obraztova A,Stewart N,Popa R,Fredrickson JK,Tiedje JM,Nealson KH,Zhou J

    更新日期:2006-08-01 00:00:00

  • Tetragenococcus koreensis sp. nov., a novel rhamnolipid-producing bacterium.

    abstract::A Gram-positive, non-motile, non-spore-forming coccus (strain JS(T)) was isolated from kimchi (a traditional Korean food) and investigated using a polyphasic taxonomic approach. The 16S rRNA gene sequence similarity between strain JS(T) and its closest relative, Tetragenococcus halophilus IAM 1676(T), was 98.1%. The l...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63448-0

    authors: Lee M,Kim MK,Vancanneyt M,Swings J,Kim SH,Kang MS,Lee ST

    更新日期:2005-07-01 00:00:00

  • Bacillus safensis sp. nov., isolated from spacecraft and assembly-facility surfaces.

    abstract::Thirteen strains of a novel spore-forming, Gram-positive, mesophilic heterotrophic bacterium were isolated from spacecraft surfaces (Mars Odyssey Orbiter) and assembly-facility surfaces at the Jet Propulsion Laboratory in California and the Kennedy Space Center in Florida. Phylogenetic analysis of 16S rRNA gene sequen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64189-0

    authors: Satomi M,La Duc MT,Venkateswaran K

    更新日期:2006-08-01 00:00:00

  • Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater.

    abstract::Eight strains of spore-forming, sulfate-reducing bacteria, isolated from groundwater contaminated with motor fuel [mostly benzene, toluene ethylbenzene and xylene (BTEX) compounds] in sandy soil near Perth, Australia, were closely related to Desulfosporosinus (previously Desulfotomaculum) orientis DSM 765T (95.3-97.3%...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-1-133

    authors: Robertson WJ,Bowman JP,Franzmann PD,Mee BJ

    更新日期:2001-01-01 00:00:00

  • Cupidesulfovibrio liaohensis gen. nov., sp. nov., a novel sulphate-reducing bacterium isolated from an oil reservoir and reclassification of Desulfovibrio oxamicus and Desulfovibrio termitidis as Cupidesulfovibrio oxamicus comb. nov. and Cupidesulfovibrio

    abstract::A novel sulphate-reducing, Gram-stain-negative, anaerobic strain, isolate XJ01T, recovered from production fluid at the LiaoHe oilfield, PR China, was the subject of a polyphasic study. The isolate together with Desulfovibrio oxamicus NCIMB 9442T and Desulfovibrio termitidis DSM 5308T formed a distinct, well-supported...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004618

    authors: Wan YY,Luo N,Liu XL,Lai QL,Goodfellow M

    更新日期:2021-01-06 00:00:00

  • Pukyongiella litopenaei gen. nov., sp. nov., a novel bacterium isolated from the gut content of a whiteleg shrimp Litopenaeus vannamei.

    abstract::A Gram-negative, aerobic bacterium, designated as SH-1T, was isolated from the gut content of a whiteleg shrimp, Litopenaeus vannamei collected in a shrimp farm in South Korea. The bacterial cells were ovoid rod-shaped, non-motile, oxidase-positive and catalase-negative. Growth was observed at 20-35 °C (optimum, 30 °C...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004269

    authors: Kim YS,Kim SE,Kim SJ,Jung HK,Kim KH

    更新日期:2020-07-01 00:00:00

  • Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor.

    abstract::A novel anaerobic, mesophilic, hydrogen-producing bacterium, designated strain M2/40(T), was isolated from a mesophilic, two-phase, laboratory-scale biogas reactor fed continuously with maize silage supplemented with 5% wheat straw. 16S rRNA gene sequence comparison revealed an affiliation to the genus Clostridium sen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.059691-0

    authors: Hahnke S,Striesow J,Elvert M,Mollar XP,Klocke M

    更新日期:2014-08-01 00:00:00

  • Kondoa qatarensis f.a., sp. nov., a novel yeast species isolated from marine water in Qatar.

    abstract::During a study of yeast diversity in marine waters of the Arabian Gulf surrounding Qatar, 30 strains were isolated that represent a novel species of Kondoa. The isolates were obtained from five locations along the Qatari coast. Species identifications were based on sequence analysis of the internal transcribed spacer ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003182

    authors: Fotedar R,Kolecka A,Boekhout T,Fell JW,Zeyara A,Al Malki A,Al Marri M

    更新日期:2019-02-01 00:00:00

  • Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio.

    abstract::Four obligately anaerobic, thermophilic, sulfate-reducing bacterial strains, designated TGE-P1(T), TDV(T), TGL-LS1 and TSL-P1, were isolated from thermophilic (operated at 55 degrees C) methanogenic sludges from waste and wastewater treatment. The optimum temperature for growth of all the strains was in the range 55-6...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.2008/000893-0

    authors: Sekiguchi Y,Muramatsu M,Imachi H,Narihiro T,Ohashi A,Harada H,Hanada S,Kamagata Y

    更新日期:2008-11-01 00:00:00

  • Pseudoalteromonas aestuariivivens sp. nov., isolated from a tidal flat.

    abstract::A Gram-stain-negative, aerobic, motile, rod-shaped or ovoid bacterial strain, designated DB-2T, was isolated from a tidal flat of the Yellow Sea in South Korea, and subjected to a taxonomic study using a polyphasic approach. Strain DB-2T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaC...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000995

    authors: Park S,Jung YT,Park DS,Yoon JH

    更新日期:2016-05-01 00:00:00

  • Shewanella aestuarii sp. nov., a marine bacterium isolated from a tidal flat.

    abstract::A Gram-stain-negative, non-spore-forming, facultatively anaerobic bacterium, designated strain SC18(T), was isolated from a tidal flat of Suncheon bay in South Korea. Cells were rod-shaped and motile by means of a polar flagellum. Cells were catalase-, oxidase- and β-haemolysis-positive. Growth was observed at 4-37 °C...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.055178-0

    authors: Park HY,Jeon CO

    更新日期:2013-12-01 00:00:00

  • Thermus arciformis sp. nov., a thermophilic species from a geothermal area.

    abstract::Two aerobic, Gram-negative, non-motile, non-sporulating, yellow-pigmented bacteria, strains TH92(T) and TH91, were isolated from a hot spring located in Laibin, Guangxi, in the south-eastern geothermal area of China. The isolates grew at 40-77 degrees C (optimally at 70 degrees C) and at pH 6.0-9.5 (optimally at pH 7....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.007690-0

    authors: Zhang XQ,Ying Y,Ye Y,Xu XW,Zhu XF,Wu M

    更新日期:2010-04-01 00:00:00

  • Isolation, pure culture and characterization of Serratia symbiotica sp. nov., the R-type of secondary endosymbiont of the black bean aphid Aphis fabae.

    abstract::An intracellular symbiotic bacterium was isolated from the flora of a natural clone of the black bean aphid Aphis fabae. The strain was able to grow freely in aerobic conditions on a rich medium containing 1 % of each of the following substrates: glucose, yeast extract and casein peptone. Pure culture was achieved thr...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024133-0

    authors: Sabri A,Leroy P,Haubruge E,Hance T,Frère I,Destain J,Thonart P

    更新日期:2011-09-01 00:00:00

  • Reclassification of Thiomicrospira hydrogeniphila (Watsuji et al. 2016) to Thiomicrorhabdus hydrogeniphila comb. nov., with emended description of Thiomicrorhabdus (Boden et al., 2017).

    abstract::The genus Thiomicrorhabdus (Tmr) in the Piskirickettsiaceae in the Thiotrichales of the Gammaproteobacteria contains four species of sulfur-oxidising obligate chemolithoautotroph with validly published names, all previously classified as Thiomicrospira (Tms) species. Here we demonstrate that Thiomicrospira hydrogeniph...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002279

    authors: Boden R,Scott KM,Rae AW,Hutt LP

    更新日期:2017-10-01 00:00:00

  • Arthrobacter nasiphocae sp. nov., from the common seal (Phoca vitulina).

    abstract::An unknown gram-positive, catalase-positive, strictly aerobic, rod-shaped bacterium was isolated from the nasal cavities of two common seals. Chemical analysis revealed the presence in the bacterium of a hitherto unknown cell-wall murein [type: L-Lys-L-Ala2-Gly(2-3)-L-Ala (Gly)]. Comparative 16S rRNA gene sequencing s...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-2-569

    authors: Collins MD,Hoyles L,Foster G,Falsen E,Weiss N

    更新日期:2002-03-01 00:00:00

  • Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome.

    abstract::A pure culture of an actinobacterium previously described as 'Candidatus Rhodoluna lacicola' strain MWH-Ta8 was established and deposited in two public culture collections. Strain MWH-Ta8(T) represents a free-living planktonic freshwater bacterium obtained from hypertrophic Meiliang Bay, Lake Taihu, PR China. The stra...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.065292-0

    authors: Hahn MW,Schmidt J,Taipale SJ,Doolittle WF,Koll U

    更新日期:2014-09-01 00:00:00