Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome.

Abstract:

:A pure culture of an actinobacterium previously described as 'Candidatus Rhodoluna lacicola' strain MWH-Ta8 was established and deposited in two public culture collections. Strain MWH-Ta8(T) represents a free-living planktonic freshwater bacterium obtained from hypertrophic Meiliang Bay, Lake Taihu, PR China. The strain was characterized by phylogenetic and taxonomic investigations, as well as by determination of its complete genome sequence. Strain MWH-Ta8(T) is noticeable due to its unusually low values of cell size (0.05 µm(3)), genome size (1.43 Mbp), and DNA G+C content (51.5 mol%). Phylogenetic analyses based on 16S rRNA gene and RpoB sequences suggested that strain MWH-Ta8(T) is affiliated with the family Microbacteriaceae with Pontimonas salivibrio being its closest relative among the currently described species within this family. Strain MWH-Ta8(T) and the type strain of Pontimonas salivibrio shared a 16S rRNA gene sequence similarity of 94.3 %. The cell-wall peptidoglycan of strain MWH-Ta8(T) was of type B2β (B10), containing 2,4-diaminobutyric acid as the diamino acid. The predominant cellular fatty acids were anteiso-C15 : 0 (36.5 %), iso-C16 : 0 (16.5 %), iso-C15 : 0 (15.6 %) and iso-C14 : 0 (8.9 %), and the major (>10 %) menaquinones were MK-11 and MK-12. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and two unknown glycolipids. The combined phylogenetic, phenotypic and chemotaxonomic data clearly suggest that strain MWH-Ta8(T) represents a novel species of a new genus in the family Microbacteriaceae, for which the name Rhodoluna lacicola gen. nov., sp. nov. is proposed. The type strain of the type species is MWH-Ta8(T) ( = DSM 23834(T) = LMG 26932(T)).

authors

Hahn MW,Schmidt J,Taipale SJ,Doolittle WF,Koll U

doi

10.1099/ijs.0.065292-0

subject

Has Abstract

pub_date

2014-09-01 00:00:00

pages

3254-3263

issue

Pt 9

eissn

1466-5026

issn

1466-5034

journal_volume

64

pub_type

杂志文章
  • Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria.

    abstract::Bryobacter aggregatus gen. nov., sp. nov. is proposed to accommodate three strains of slowly growing, chemo-organotrophic bacteria isolated from acidic Sphagnum peat bogs. These bacteria were strictly aerobic, Gram-negative, colourless, non-motile coccoids or short rods that multiplied by normal cell division and form...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.013250-0

    authors: Kulichevskaya IS,Suzina NE,Liesack W,Dedysh SN

    更新日期:2010-02-01 00:00:00

  • Thioalbus denitrificans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing gammaproteobacterium, isolated from marine sediment.

    abstract::A mesophilic, facultatively anaerobic, autotrophic bacterium, designated strain Su4(T), was isolated from marine sediment. The isolate was able to utilize reduced sulfur compounds including thiosulfate, tetrathionate, sulfur and sulfide but not sulfite as the energy source. Growth occurred under aerobic and denitrifyi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024844-0

    authors: Park SJ,Pham VH,Jung MY,Kim SJ,Kim JG,Roh DH,Rhee SK

    更新日期:2011-09-01 00:00:00

  • Sphingomonas populi sp. nov., isolated from bark of Populus × euramericana.

    abstract::One Gram-stain-negative, aerobic, motile bacterial strain, 3-7T, was isolated from symptomatic canker bark tissue of Populus × euramericana. 16S rRNA gene sequence data revealed that the novel isolate shared highest similarity with Sphingomonas panacis DCY99T (98.8 %), and <96.5 % sequence similarity with all other sp...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003841

    authors: Li Y,Bian DR,Chang JP,Guo LM,Yang XQ

    更新日期:2020-02-01 00:00:00

  • Polaribacter dokdonensis sp. nov., isolated from seawater.

    abstract::A Gram-negative, non-motile, non-spore-forming, slightly halophilic bacterial strain, DSW-5(T), was isolated from seawater off Dokdo, Korea, and subjected to a polyphasic taxonomic study. It grew optimally at 25-28 degrees C and in the presence of 2 % (w/v) NaCl. Strain DSW-5(T) contained MK-6 as the predominant menaq...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63820-0

    authors: Yoon JH,Kang SJ,Oh TK

    更新日期:2006-06-01 00:00:00

  • Deinococcus metallilatus sp. nov. and Deinococcus carri sp. nov., isolated from a car air-conditioning system.

    abstract::Two bacterial strains, designated MA1002(T) and MA1003(T), were isolated from the air-conditioning system of a car. Cells of both strains were Gram-reaction-positive, non-motile, non-spore-forming coccoids, catalase- and oxidase-positive and UV-radiation resistant. The major fatty acids of strain MA1002(T) were iso-C1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000396

    authors: Kim DU,Lee H,Lee JH,Ahn JH,Lim S,Jeong S,Park SY,Seong CN,Ka JO

    更新日期:2015-09-01 00:00:00

  • Wickerhamiella brachini f.a., sp. nov., Wickerhamiella pterostichi f.a., sp. nov. and Wickerhamiella qilinensis f.a., sp. nov., three yeast species isolated from insects.

    abstract::Eight strains representing three novel yeast species were isolated from insects distributed in three localities in Nanyang, Henan Province, Central China during 2014 and 2015. Sequence analysis of the D1/D2 domains of the large subunit (LSU) rRNA gene revealed that these species are members of the Wickerhamiella clade...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001300

    authors: Liu XJ,Wang Y,Ren YC,Hui FL

    更新日期:2016-10-01 00:00:00

  • Cystobasidium halotolerans sp. nov., a novel basidiomycetous yeast species isolated from the Arabian Gulf.

    abstract::Two strains, 1Y129 and 3Y383, which represent a single novel anamorphic yeast species, were isolated from the Arabian Gulf surrounding Qatar. The two strains have identical sequences in the D1/D2 domains of the large subunit (LSU) and the internal transcribed spacer (ITS) regions of the rRNA gene. On the basis of this...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003250

    authors: Fotedar R,Fell JW,Boekhout T,Kolecka A,Zeyara A,Kaul R,Malki AA,Marri MA

    更新日期:2019-03-01 00:00:00

  • Aspergillus saccharolyticus sp. nov., a black Aspergillus species isolated in Denmark.

    abstract::A novel species, Aspergillus saccharolyticus sp. nov., belonging to the Aspergillus section Nigri group is described. This species was isolated in Denmark from treated hardwood. Its taxonomic status was determined using a polyphasic taxonomic approach including phenotypic (morphology and extrolite profiles) and molecu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.029884-0

    authors: Sørensen A,Lübeck PS,Lübeck M,Nielsen KF,Ahring BK,Teller PJ,Frisvad JC

    更新日期:2011-12-01 00:00:00

  • Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti.

    abstract::A strain (Hime 5-1T) of lactic acid bacterium was isolated from the gut of the grasshopper Metrioptera engelhardti from a mountainous area of Nagano Prefecture, Japan. Strain Hime 5-1T had a low 16S rRNA gene sequence similarity to known lactic acid bacteria, with the closest recognized relatives being Lactobacillus t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002694

    authors: Chiba M,Itabashi T,Hirai K,Sakamoto M,Ohkuma M,Ishige T,Kawasaki S

    更新日期:2018-05-01 00:00:00

  • Salinarimonas rosea gen. nov., sp. nov., a new member of the alpha-2 subgroup of the Proteobacteria.

    abstract::A Gram-negative, rod-shaped, facultatively anaerobic, halotolerant bacterial strain, designated YIM YD3(T), was isolated from a salt mine in Yunnan, south-west China. The taxonomy of strain YIM YD3(T) was investigated by a polyphasic approach. Strain YIM YD3(T) was motile, formed pink colonies and was positive for cat...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.006981-0

    authors: Liu JH,Wang YX,Zhang XX,Wang ZG,Chen YG,Wen ML,Xu LH,Peng Q,Cui XL

    更新日期:2010-01-01 00:00:00

  • Saturnispora bothae sp. nov., isolated from rotting wood.

    abstract::Two strains representing a novel species of the genus Saturnispora were isolated from rotting wood samples collected in an Atlantic Rainforest site in Brazil. Analyses of the sequences of the D1/D2 domains of the rRNA gene showed that this novel species belongs to a subclade in the Saturnispora clade formed by Saturni...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001269

    authors: Morais CG,Lara CA,Borelli BM,Cadete RM,Moreira JD,Lachance MA,Rosa CA

    更新日期:2016-10-01 00:00:00

  • Geodermatophilus marinus sp. nov., isolated from the marine sponge Leucetta chagosensis.

    abstract::A novel actinobacterium, designated LHW52908T, was isolated from a marine sponge, Leucettachagosensis, collected in the South China Sea. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain LHW52908T was member of the family Geodermatophilaceae, with highest similarities to Geodermatophilus obscur...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003478

    authors: Li L,Zhang D,Tang WZ,Lin HW,Lu YH

    更新日期:2019-10-01 00:00:00

  • Lactobacillus silagei sp. nov., isolated from orchardgrass silage.

    abstract::A Gram-reaction-positive, facultatively anaerobic, non-spore-forming and catalase-negative rod-shaped bacterial strain, designated IWT126(T), was isolated from orchardgrass (Dactylis glomerata L.) silage preserved in Hachimantai, Iwate, Japan. The isolate showed growth at 15-45 °C, pH 3.5-7.5 and with 4.0 % (w/v) NaCl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.053124-0

    authors: Tohno M,Kitahara M,Irisawa T,Masuda T,Uegaki R,Ohkuma M,Tajima K

    更新日期:2013-12-01 00:00:00

  • Mycobacterium florentinum sp. nov., isolated from humans.

    abstract::Eight mycobacterial strains isolated during an 11 year period from the sputum of independent patients with various pulmonary disorders and, in one case, from a lymph node of a young girl, were found to present identical features. Phenotypic and genotypic characteristics revealed that the most closely related species t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63485-0

    authors: Tortoli E,Rindi L,Goh KS,Katila ML,Mariottini A,Mattei R,Mazzarelli G,Suomalainen S,Torkko P,Rastogi N

    更新日期:2005-05-01 00:00:00

  • Bacillus taiwanensis sp. nov., isolated from a soil sample from Taiwan.

    abstract::A Gram-stain-positive, rod-shaped, endospore-forming, aerobic bacterium (FJAT-14571(T)) was isolated from a soil sample in Taiwan. Strain FJAT-14571(T) grew at 20-40 °C (optimum 35 °C), pH 6-10 (optimum pH 8) and 0-2% (w/v) NaCl (optimum 0%). Phylogenetic analyses based on 16S rRNA gene sequences showed that strain FJ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000222

    authors: Liu B,Liu GH,Sengonca C,Schumann P,Wang MK,Xiao RF,Zheng XF,Chen Z

    更新日期:2015-07-01 00:00:00

  • Halorubrum aquaticum sp. nov., an archaeon isolated from hypersaline lakes.

    abstract::Two halophilic archaea, strains EN-2(T) and SH-4, were isolated from the saline lakes Erliannor and Shangmatala, respectively, in Inner Mongolia, China. Cells were strictly aerobic, motile rods. Colonies were red. Strains EN-2(T) and SH-4 were able to grow at 25-50 °C (optimum 35-40 °C), with 2.5-5.0 M NaCl (optimum 3...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.025015-0

    authors: Gutiérrez MC,Castillo AM,Corral P,Kamekura M,Ventosa A

    更新日期:2011-05-01 00:00:00

  • Prevotella brunnea sp. nov., isolated from a wound of a patient.

    abstract::A strain of an obligately anaerobic, Gram-stain-negative rod-shaped bacterium is described by phenotypical, biochemical and genotypical characterization. Strain A2672T was isolated from a wound of a patient sampled during routine care at hospital. Phylogenetic analysis was based on full-length 16S rRNA gene sequence a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003715

    authors: Buhl M,Dunlap C,Marschal M

    更新日期:2019-12-01 00:00:00

  • Streptosporangium jomthongense sp. nov., an actinomycete isolated from rhizospheric soil and emendation of the genus Streptosporangium.

    abstract::A novel actinomycete, strain 30EHS(T), was isolated from the rhizospheric soil under an elephant ear plant (Caladium bicolor) in Jomthong district, Bangkok, Thailand. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 30EHS(T) fell within the cluster of the genus Streptosporangium. Chemical co...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.061978-0

    authors: Intra B,Matsumoto A,Inahashi Y,Ōmura S,Panbangred W,Takahashi Y

    更新日期:2014-07-01 00:00:00

  • Cystobasidiomycetes yeasts from Patagonia (Argentina): description of Rhodotorula meli sp. nov. from glacial meltwater.

    abstract::A basidiomycetous yeast, strain CRUB 1032(T), which formed salmon-pink colonies, was isolated from glacial meltwater in Patagonia, Argentina. Morphological, physiological and biochemical characterization indicated that this strain belonged to the genus Rhodotorula. Molecular taxonomic analysis based on the 26S rDNA D1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.018499-0

    authors: Libkind D,Sampaio JP,van Broock M

    更新日期:2010-09-01 00:00:00

  • Pseudopuniceibacterium antarcticum sp. nov., isolated from an Antarctic marine sponge.

    abstract::A Gram-negative, aerobic, rod-shaped, non-motile bacterium, designated strain HQ09T, was isolated from a marine sponge off the coast of Fields Peninsula, West Antarctica. Strain HQ09T grew at 4-35 °C (optimum, 25 °C), pH 5-9 (optimum, pH 7.0), and with 1-10% NaCl (optimum, 2 %). Phylogenetic analysis based on the 16S ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004605

    authors: Liao L,Su SY,Zhang YJ,Liu H,Zhang XY,Zhang J,Wen J,Chen B,Yu Y

    更新日期:2021-01-01 00:00:00

  • Streptococcus plurextorum sp. nov., isolated from pigs.

    abstract::Biochemical and molecular genetic studies were performed on an unknown Gram-positive, catalase-negative, coccus-shaped organism isolated from clinical samples from pigs. On the basis of the results of cellular morphological and biochemical tests, the organism was identified as a streptococcal species. 16S rRNA gene se...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65636-0

    authors: Vela AI,Casamayor A,Sánchez Del Rey V,Domínguez L,Fernández-Garayzábal JF

    更新日期:2009-03-01 00:00:00

  • Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34).

    abstract::A pink-pigmented, aerobic, facultatively methylotrophic bacterium, strain BJ001T, was isolated from internal poplar tissues (Populus deltoidesxnigra DN34) and identified as a member of the genus Methylobacterium. Phylogenetic analyses showed that strain BJ001T is related to Methylobacterium thiocyanatum, Methylobacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02796-0

    authors: Van Aken B,Peres CM,Doty SL,Yoon JM,Schnoor JL

    更新日期:2004-07-01 00:00:00

  • Jeotgalibacillus salarius sp. nov., isolated from a marine saltern, and reclassification of Marinibacillus marinus and Marinibacillus campisalis as Jeotgalibacillus marinus comb. nov. and Jeotgalibacillus campisalis comb. nov., respectively.

    abstract::A Gram-variable, motile and rod-shaped bacterial strain, ASL-1(T), was isolated from a marine saltern located on the coast of the Yellow Sea, Korea. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain ASL-1(T) clustered with Jeotgalibacillus alimentarius YKJ-13(T) and that this cl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.008318-0

    authors: Yoon JH,Kang SJ,Schumann P,Oh TK

    更新日期:2010-01-01 00:00:00

  • Halomonas lutescens sp. nov., a halophilic bacterium isolated from a lake sediment.

    abstract::A novel, Gram-stain-negative, facultatively anaerobic, halophilic bacterium, designated strain Q1UT, was isolated from a sediment sample collected from Qinghai Lake, PR China. The cells of the strain were short rod-shaped (0.2-0.3×0.6-2.5 µm) and non-motile. Strain Q1UT formed yellowish colonies and grew at temperatur...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001413

    authors: Wang T,Wei X,Xin Y,Zhuang J,Shan S,Zhang J

    更新日期:2016-11-01 00:00:00

  • Marinobacter pelagius sp. nov., a moderately halophilic bacterium.

    abstract::A Gram-negative, aerobic, neutrophilic, moderately halophilic bacterial strain, HS225(T), was isolated from seawater samples around the Zhoushan Archipelago, Zhejiang Province, China. The isolate grew optimally in media with 5.0 % NaCl, at pH 7.0-8.0 and at 25-30 degrees C. The predominant fatty acids were C(16 : 0)om...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65390-0

    authors: Xu XW,Wu YH,Wang CS,Yang JY,Oren A,Wu M

    更新日期:2008-03-01 00:00:00

  • Chryseobacterium lineare sp. nov., isolated from a limpid stream.

    abstract::A Gram-stain-negative, aerobic, non-motile, rod-shaped, yellow-pigmented bacterial strain, XC0022T, isolated from freshwater of a limpid stream in Zhejiang, China, was studied using a polyphasic approach. The phylogenetic analysis based on 16S rRNA gene sequences clearly showed an allocation to the genus Chryseobacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001629

    authors: Zhao Z,Tu YQ,Shen X,Han SB,Zhang CY,Sun C,Wu M

    更新日期:2017-04-01 00:00:00

  • Egicoccus halophilus gen. nov., sp. nov., a halophilic, alkalitolerant actinobacterium and proposal of Egicoccaceae fam. nov. and Egicoccales ord. nov.

    abstract::A novel Gram-stain-positive, non-motile, moderately halophilic and alkalitolerant actinobacterium, designated EGI 80432T, was isolated from a saline-alkaline soil of Xinjiang province, north-west China. Cells were non-endospore-forming cocci with a diameter of 0.5-0.8 μm. Strain EGI 80432T grew in the presence of 0-9 ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000749

    authors: Zhang YG,Chen JY,Wang HF,Xiao M,Yang LL,Guo JW,Zhou EM,Zhang YM,Li WJ

    更新日期:2016-02-01 00:00:00

  • Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines.

    abstract::Taxonomic studies were performed on ten hydrogen-oxidizing, facultatively chemolithotrophic bacteria that were isolated from volcanic mudflow deposits derived from the eruption of Mt. Pinatubo in the Philippines in 1991. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these isolates belonged to t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63922-0

    authors: Sato Y,Nishihara H,Yoshida M,Watanabe M,Rondal JD,Concepcion RN,Ohta H

    更新日期:2006-05-01 00:00:00

  • Geobacter luticola sp. nov., an Fe(III)-reducing bacterium isolated from lotus field mud.

    abstract::A novel species of Fe(III)-reducing bacterium, designated strain OSK6(T), belonging to the genus Geobacter, was isolated from lotus field mud in Japan. Strain OSK6(T) was isolated using a solid medium containing acetate, Fe(III)-nitrilotriacetate (NTA) and gellan gum. The isolate is a strictly anaerobic, gram-negative...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.039321-0

    authors: Viulu S,Nakamura K,Okada Y,Saitou S,Takamizawa K

    更新日期:2013-02-01 00:00:00

  • Amphritea spongicola sp. nov., isolated from a marine sponge, and emended description of the genus Amphritea.

    abstract::A Gram-stain-negative, rod-shaped (1.2-2.1 μm × 0.8-0.9 μm), flagellated and motile marine bacterium, designated MEBiC05461T, was isolated from a marine sponge inhabiting Micronesia. Strain MEBiC05461T was oxidase-negative and catalase-positive. Growth was observed at 8.0-35.6 °C (optimum 30.0 °C), at pH 5.0-9.0 (opti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000188

    authors: Jang H,Yang SH,Seo HS,Lee JH,Kim SJ,Kwon KK

    更新日期:2015-06-01 00:00:00