Geodermatophilus marinus sp. nov., isolated from the marine sponge Leucetta chagosensis.

Abstract:

:A novel actinobacterium, designated LHW52908T, was isolated from a marine sponge, Leucettachagosensis, collected in the South China Sea. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain LHW52908T was member of the family Geodermatophilaceae, with highest similarities to Geodermatophilus obscurus DSM 43160T (97.7 %), Geodermatophilus siccatus CF6T (97.6 %) and Geodermatophiluschilensis B12T (97.5 %). Multilocus sequence analysis confirmed that the strain should be a member of genus Geodermatophilus. Chemotaxonomic characteristics confirmed the genus-level affiliation of strain LHW52908T. Based on phylogenetic data, average nucleotide identity and digital DNA-DNA hybridization results, strain LHW52908T could be distinguished from its closest neighbours, representing a novel species of the genus Geodermatophilus, for which the name Geodermatophilusmarinus sp. nov. is proposed, with the type strain LHW52908T (=DSM 106570T=CCTCC AA 2018014T).

authors

Li L,Zhang D,Tang WZ,Lin HW,Lu YH

doi

10.1099/ijsem.0.003478

subject

Has Abstract

pub_date

2019-10-01 00:00:00

pages

2966-2971

issue

10

eissn

1466-5026

issn

1466-5034

journal_volume

69

pub_type

杂志文章
  • Salinicoccus halodurans sp. nov., a moderate halophile from saline soil in China.

    abstract::A moderately halophilic, Gram-positive coccus, designated strain W24(T), was isolated from saline soil in Qinghai province, China. The isolate was able to grow at salinities of 0-24 % (w/v) NaCl (optimally at 8 %, w/v), at pH 5.5-9.0 (optimally at pH 7.5) and at 8-43 degrees C (optimally at 28 degrees C). The genomic ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65467-0

    authors: Wang X,Xue Y,Yuan S,Zhou C,Ma Y

    更新日期:2008-07-01 00:00:00

  • Lactococcus formosensis sp. nov., a lactic acid bacterium isolated from yan-tsai-shin (fermented broccoli stems).

    abstract::A coccal-shaped organism, designated 516(T), was isolated from yan-tsai-shin (fermented broccoli stems), a traditional fermented food in Taiwan. 16S rRNA gene sequencing results showed that strain 516(T) had 98.9 % sequence similarity to that of the type strain Lactococcus garvieae NBRC 100934(T). Comparison of three ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.052811-0

    authors: Chen YS,Otoguro M,Lin YH,Pan SF,Ji SH,Yu CR,Liou MS,Chang YC,Wu HC,Yanagida F

    更新日期:2014-01-01 00:00:00

  • Pseudarthrobacter psychrotolerans sp. nov., a cold-adapted bacterium isolated from Antarctic soil.

    abstract::A novel cold-tolerant bacterium, designated strain YJ56T, was isolated from Antarctic soil collected from the Cape Burk area. Phylogenetic analysis through 16S rRNA gene sequence similarity revealed that strain YJ56T was most closely related to the genus Pseudarthrobacter, including Pseudarthrobacter oxydans DSM 20119...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004505

    authors: Shin Y,Lee BH,Lee KE,Park W

    更新日期:2020-12-01 00:00:00

  • Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water.

    abstract::The taxonomic characteristics of two bacterial strains, RB-8(T) and RB-9, isolated from hydrocarbon-degrading enrichment cultures obtained from Antarctic coastal marine environments (Rod Bay, Ross Sea), were determined. These bacteria were psychrophilic, aerobic and Gram-negative with polar flagella. Growth was not ob...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02366-0

    authors: Yakimov MM,Giuliano L,Gentile G,Crisafi E,Chernikova TN,Abraham WR,Lünsdorf H,Timmis KN,Golyshin PN

    更新日期:2003-05-01 00:00:00

  • Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum.

    abstract::Strain DCY 63(T), isolated from the rhizosphere of ginseng, was a Gram-reaction-negative, strictly aerobic, non-motile, catalase- and oxidase-positive rod. 16S rRNA gene sequence analysis revealed that strain DCY 63(T) belonged to the genus Chryseobacterium and was closely related to Chryseobacterium indoltheticum LMG...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.045427-0

    authors: Nguyen NL,Kim YJ,Hoang VA,Yang DC

    更新日期:2013-08-01 00:00:00

  • Marinimicrobium locisalis sp. nov., isolated from a marine solar saltern, and emended description of the genus Marinimicrobium.

    abstract::A Gram-negative, motile and rod-shaped bacterial strain, designated ISL-43T, was isolated from a marine solar saltern of the Yellow Sea, Korea, and its taxonomic position was investigated by means of a polyphasic study. Strain ISL-43T grew optimally at pH 7.0-8.0 and 30 degrees C and in the presence of approximately 2...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.008458-0

    authors: Yoon JH,Kang SJ,Jung YT,Oh TK

    更新日期:2009-09-01 00:00:00

  • Pseudoalteromonas aestuariivivens sp. nov., isolated from a tidal flat.

    abstract::A Gram-stain-negative, aerobic, motile, rod-shaped or ovoid bacterial strain, designated DB-2T, was isolated from a tidal flat of the Yellow Sea in South Korea, and subjected to a taxonomic study using a polyphasic approach. Strain DB-2T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaC...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000995

    authors: Park S,Jung YT,Park DS,Yoon JH

    更新日期:2016-05-01 00:00:00

  • Corynebacterium guangdongense sp. nov., isolated from a contaminated plate.

    abstract::A novel Gram-reaction-positive, non-motile and facultatively anaerobic bacterium, designated strain S01T, was isolated from a nutrient agar plate kept on a laboratory clean bench at Guangdong Institute of Microbiology, PR China, which was contaminated from an unknown source. Strain S01T was found to be catalase-positi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001177

    authors: Li YX,Yang SZ,Feng GD,Wang YH,Zhu HH

    更新日期:2016-08-01 00:00:00

  • Thalassobius litorarius sp. nov., isolated from a tidal flat.

    abstract::A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, belonging to the family Rhodobacteraceae, designated strain MME-075T, was isolated from a tidal flat. Strain MME-075T grew with 1-5% (w/v) NaCl at 20-35 °C and at pH 7-9. Optimal growth occurred with 2% (w/v) NaCl at 25-30 °C and at pH 7. The dominan...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000931

    authors: Park I,Cha IT,Seo MJ

    更新日期:2016-04-01 00:00:00

  • 'Candidatus Magnetoglobus multicellularis', a multicellular, magnetotactic prokaryote from a hypersaline environment.

    abstract::Phylogenetic analysis and phenotypic characterization were used to assign a multicellular magnetotactic prokaryote the name 'Candidatus Magnetoglobus multicellularis'. 'Candidatus Magnetoglobus multicellularis' lives in a large hypersaline coastal lagoon from Brazil and has properties that are unique among prokaryotes...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64857-0

    authors: Abreu F,Martins JL,Silveira TS,Keim CN,de Barros HGPL,Filho FJG,Lins U

    更新日期:2007-06-01 00:00:00

  • Kordiimonas pumila sp. nov., isolated from coastal sediment.

    abstract::A novel Gram-stain-negative, translucent-white, aerobic, motile and rod-shaped strain, designated N18T, was isolated from a coastal sediment sample collected in Zhoushan, Zhejiang Province, China. 16S rRNA gene similarity analysis revealed that strain N18T demonstrated highest similarity to the genus Kordiimonas(95.3-...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002740

    authors: Ju Z,Zhang R,Hou XJ,Han SB,Li Y,Sun C,Wu M,Xu L

    更新日期:2018-05-01 00:00:00

  • Brevirhabdus pacifica gen. nov., sp. nov., isolated from deep-sea sediment in a hydrothermal vent field.

    abstract::A Gram-stain-negative, motile, aerobic bacterial strain, designated 22DY15T, was isolated from a deep-sea sediment sample collected from a hydrothermal vent field located in the East Pacific Rise. The isolate was a short rod with a single flagellum and was positive for catalase and oxidase activities. Q-10 was the pre...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000469

    authors: Wu YH,Xu L,Zhou P,Wang CS,Oren A,Xu XW

    更新日期:2015-10-01 00:00:00

  • Brevibacterium massiliense sp. nov., isolated from a human ankle discharge.

    abstract::Gram-positive, non-spore-forming rods, strain 5401308T, were isolated from a human ankle discharge. Based on cellular morphology and the results of biochemical testing, this strain was tentatively identified as an undescribed member of the genus Brevibacterium. The major fatty acids were anteiso-C15:0 (45.3%), anteiso...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.007864-0

    authors: Roux V,Raoult D

    更新日期:2009-08-01 00:00:00

  • Rhizobium anhuiense sp. nov., isolated from effective nodules of Vicia faba and Pisum sativum.

    abstract::Four rhizobia-like strains, isolated from root nodules of Pisum sativum and Vicia faba grown in Anhui and Jiangxi Provinces of China, were grouped into the genus Rhizobium but were distinct from all recognized species of the genus Rhizobium by phylogenetic analysis of 16S rRNA and housekeeping genes. The combined sequ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000365

    authors: Zhang YJ,Zheng WT,Everall I,Young JPW,Zhang XX,Tian CF,Sui XH,Wang ET,Chen WX

    更新日期:2015-09-01 00:00:00

  • Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine.

    abstract::A filamentous actinomycete, designated strain CCNWNQ 0016(T), was isolated from soil from a zinc and copper mine in Shaanxi province, north-western China. A polyphasic taxonomic study was carried out to establish the status of strain CCNWNQ 0016(T). Chemical and morphological properties of the isolate were similar to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024018-0

    authors: Lin YB,Wang XY,Li HF,Wang NN,Wang HX,Tang M,Wei GH

    更新日期:2011-03-01 00:00:00

  • Arthrobacter yangruifuii sp. nov. and Arthrobacter zhaoguopingii sp. nov., two new members of the genus Arthrobacter.

    abstract::Four unknown strains belonging to the genus Arthrobacter were isolated from plateau wildlife on the Qinghai-Tibet Plateau of PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that the four isolates were separated into two clusters. Cluster I (strains 785T and 208) had the greatest 16S rRNA gene s...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004414

    authors: Ge Y,Tao Y,Yang J,Lai XH,Jin D,Lu S,Huang Y,Luo X,Zhou J,Zhang X,Xu J

    更新日期:2020-10-01 00:00:00

  • Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria.

    abstract::The class Gammaproteobacteria, which forms one of the largest groups within bacteria, is currently distinguished from other bacteria solely on the basis of its branching in phylogenetic trees. No molecular or biochemical characteristic is known that is unique to the class Gammaproteobacteria or its different subgroups...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.002741-0

    authors: Gao B,Mohan R,Gupta RS

    更新日期:2009-02-01 00:00:00

  • Nocardia coubleae sp. nov., isolated from oil-contaminated Kuwaiti soil.

    abstract::Two bacterial isolates from Kuwaiti soil contaminated by crude oil were analysed by using a polyphasic taxonomic approach. The isolates, designated OFN N11 and OFN N12(T), were shown to have molecular, chemical and morphological properties typical of members of the genus Nocardia. Based on a multigenic approach that i...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64815-0

    authors: Rodríguez-Nava V,Khan ZU,Pötter G,Kroppenstedt RM,Boiron P,Laurent F

    更新日期:2007-07-01 00:00:00

  • Fabivirga thermotolerans gen. nov., sp. nov., a novel marine bacterium isolated from culture broth of a marine cyanobacterium.

    abstract::A Gram-stain-negative, red, non-spore-forming, strictly aerobic bacterium, designated strain A4T, was isolated from culture broth of a marine cyanobacterium. Cells were flexible rods with gliding motility. Phylogenetic analysis, based on 16S rRNA gene sequences, revealed that strain A4T formed a coherent cluster with ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000839

    authors: Tang M,Chen C,Li J,Xiang W,Wu H,Wu J,Dai S,Wu H,Li T,Wang G

    更新日期:2016-02-01 00:00:00

  • Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture.

    abstract::A Gram-reaction-positive, non-spore-forming, aerobic actinobacterial strain (2C6-41(T)) was isolated from the activated sludge from an industrial wastewater treatment plant in Daegu, South Korea. Its taxonomic position was investigated by using a polyphasic approach. On the basis of 16S rRNA gene sequence similarity, ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.038141-0

    authors: Cui Y,Kang MS,Woo SG,Jin L,Kim KK,Park J,Lee M,Lee ST

    更新日期:2013-01-01 00:00:00

  • Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov.

    abstract::Novel halophilic, alkalithermophilic, Gram-type-positive bacterial strains were isolated from sediment of alkaline, hypersaline lakes of the Wadi An Natrun, Egypt. Cells of strain JW/NM-WN-LFT were rod-shaped, non-spore-forming and non-motile. Strain JW/NM-WN-LFT grew (at pH55 degrees C 9.5) between 35 and 56 degrees ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65068-0

    authors: Mesbah NM,Hedrick DB,Peacock AD,Rohde M,Wiegel J

    更新日期:2007-11-01 00:00:00

  • Vagococcus elongatus sp. nov., isolated from a swine-manure storage pit.

    abstract::A polyphasic taxonomic study was performed on an uncharacterized Gram-positive, catalase-negative, elongated coccus-shaped bacterium isolated from a swine-manure storage pit. The bacterium, designated strain PPC9(T), was facultatively anaerobic and had a DNA G+C content of 44.5 mol%. Comparative 16S rRNA gene sequenci...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64730-0

    authors: Lawson PA,Falsen E,Cotta MA,Whitehead TR

    更新日期:2007-04-01 00:00:00

  • Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family Micromonosporaceae.

    abstract::An actinomycete strain 3-44-a(19)(T) was isolated from sandy soil collected in Bangladesh. The strain formed irregular pseudosporangia directly from aggregated spore chains above the rudimentary aerial mycelium. The pseudosporangia developed singly. Each pseudosporangium contained many small, non-motile, spherical, sm...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65680-0

    authors: Ara I,Matsumoto A,Bakir MA,Kudo T,Omura S,Takahashi Y

    更新日期:2008-07-01 00:00:00

  • Nocardia rhizosphaerihabitans sp. nov., a novel actinomycete isolated from a coastal soil.

    abstract::An actinomycete strain, designated KLBMP S0039T, was isolated from the rhizosphere soil of Lycium Linn., collected from the coastal region in Lianyungang, Jiangsu Province, eastern PR China, and was studied to determine its taxonomic position. The isolate showed a combination of morphological and chemotaxonomic proper...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002481

    authors: Ding P,Bai JL,Wang TT,Sun Y,Cao CL,Jiang JH,Qin S

    更新日期:2018-01-01 00:00:00

  • Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources.

    abstract::Nine Burkholderia cepacia complex (Bcc) bacteria were isolated during environmental surveys for the ecological niche of Burkholderia pseudomallei, the aetiological agent of melioidosis, in the Northern Territory of Australia. They represented two multi-locus sequence analysis-based clusters, referred to as Bcc B and B...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000251

    authors: De Smet B,Mayo M,Peeters C,Zlosnik JEA,Spilker T,Hird TJ,LiPuma JJ,Kidd TJ,Kaestli M,Ginther JL,Wagner DM,Keim P,Bell SC,Jacobs JA,Currie BJ,Vandamme P

    更新日期:2015-07-01 00:00:00

  • Kazachstania siamensis sp. nov., an ascomycetous yeast species from forest soil in Thailand.

    abstract::Two strains (S-34T and S-35) of a novel ascomycetous yeast species belonging to the genus Kazachstania were isolated from soil from a mixed deciduous forest in Amphoe Wang Nam Khiao, Nakhon Ratchasima Province, Thailand. The D1/D2 domains of the large-subunit rDNA sequences of the two strains were identical and also i...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64539-0

    authors: Limtong S,Yongmanitchai W,Tun MM,Kawasaki H,Seki T

    更新日期:2007-02-01 00:00:00

  • Planosporangium mesophilum sp. nov., isolated from rhizosphere soil of Bletilla striata.

    abstract::A Gram-stain-positive, non-motile actinomycete, designated strain YIM 48875(T), was isolated from rhizosphere soil of Bletilla striata and its taxonomic position was established by using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequence data showed that strain YIM 48875(T) belonged to the ge...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.026096-0

    authors: Cao YR,Wang Q,Jin RX,Jiang Y,Lai HX,He WX,Xu LH,Jiang CL

    更新日期:2011-06-01 00:00:00

  • Aspergillus saccharolyticus sp. nov., a black Aspergillus species isolated in Denmark.

    abstract::A novel species, Aspergillus saccharolyticus sp. nov., belonging to the Aspergillus section Nigri group is described. This species was isolated in Denmark from treated hardwood. Its taxonomic status was determined using a polyphasic taxonomic approach including phenotypic (morphology and extrolite profiles) and molecu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.029884-0

    authors: Sørensen A,Lübeck PS,Lübeck M,Nielsen KF,Ahring BK,Teller PJ,Frisvad JC

    更新日期:2011-12-01 00:00:00

  • Sunxiuqinia indica sp. nov., isolated from deep sea.

    abstract::A Gram-stain-negative, facultative anaerobic, red-pigmented, rod-shaped and non-motile strain (RC1_OXG_1FT) was isolated from deep sea water of the Indian Ocean. It was able to grow at pH 5-8 (optimum, pH 7), at 5-37 °C (optimum, 30 °C), and at salinity (% NaCl, w/v) of 0.5-5 % (optimum, 1-2 %). Catalase- and oxidase-...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004273

    authors: Li J,Qi M,Lai Q,Wang G,Shao Z

    更新日期:2020-07-01 00:00:00

  • Use of gene sequence analyses and genome comparisons for yeast systematics.

    abstract::Detection, identification and classification of yeasts have undergone a major transformation in the past decade and a half following application of gene sequence analyses and genome comparisons. Development of a database (barcode) of easily determined gene sequences from domains 1 and 2 (D1/D2) of large subunit rRNA a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章,评审

    doi:10.1099/ijs.0.054197-0

    authors: Kurtzman CP

    更新日期:2014-02-01 00:00:00