Paenibacillus darwinianus sp. nov., isolated from gamma-irradiated Antarctic soil.

Abstract:

:A novel bacterium, strain Br(T), was isolated from gamma-irradiated soils of the Britannia drift, Lake Wellman Region, Antarctica. This isolate was rod-shaped, endospore forming, Gram-stain-variable, catalase-positive, oxidase-negative and strictly aerobic. Cells possessed a monotrichous flagellum. Optimal growth was observed at 18 °C, pH 7.0 in PYGV or R2A broth. The major cellular fatty acid was anteiso-C15 : 0 (63.4 %). Primary identified lipids included phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylglycerol. Total phospholipid was 60 % (w/w) of the total lipid extract. MK-7 was the dominant isoprenoid quinone. The genomic DNA G+C content was 55.6 mol%. Based on 16S rRNA gene sequence similarity, strain Br(T) clusters within the genus Paenibacillus with similarity values ranging from 93.9 to 95.1 %. Phylogenetic analyses by maximum-likelihood, maximum-parsimony and neighbour-joining methods revealed that strain Br(T) clusters with Paenibacillus daejeonensis (AF290916), Paenibacillus tarimensis (EF125184) and Paenibacillus pinihumi (GQ423057), albeit with weak bootstrap support. On the basis of phenotypic, chemotaxonomic and phylogenetic characteristics, we propose that strain Br(T) represents a novel species, Paenibacillus darwinianus sp. nov. The type strain is Br(T) ( = DSM 27245(T) = ICMP 19912(T)).

authors

Dsouza M,Taylor MW,Ryan J,MacKenzie A,Lagutin K,Anderson RF,Turner SJ,Aislabie J

doi

10.1099/ijs.0.056697-0

subject

Has Abstract

pub_date

2014-04-01 00:00:00

pages

1406-1411

issue

Pt 4

eissn

1466-5026

issn

1466-5034

journal_volume

64

pub_type

杂志文章
  • Clostridium uliginosum sp. nov., a novel acid-tolerant, anaerobic bacterium with connecting filaments.

    abstract::An anaerobic, acid-tolerant bacterium, CK55T, was isolated from an acidic forest bog. Cells of CK55T stained Gram-negative but did not have an outer membrane. Cells were spore-forming, motile rods with peritrichous flagella, formed chains or aggregates and were linked by connecting filaments that were composed of a co...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-3-1119

    authors: Matthies C,Kuhner CH,Acker G,Drake HL

    更新日期:2001-05-01 00:00:00

  • Dietzia alimentaria sp. nov., isolated from a traditional Korean food.

    abstract::An actinobacterial strain, designated 72(T), was isolated from a traditional salt-fermented seafood in Korea. Colonies were coral red and cells were Gram-reaction-positive, non-motile rods. Strain 72(T) grew with 0-10 % (w/v) NaCl, at pH 7-10 and at 15-37 °C. Optimum growth conditions were 2 % NaCl, pH 7.0 and 30 °C. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.021501-0

    authors: Kim J,Roh SW,Choi JH,Jung MJ,Nam YD,Kim MS,Park EJ,Shin KS,Bae JW

    更新日期:2011-09-01 00:00:00

  • Agarivorans albus gen. nov., sp. nov., a gamma-proteobacterium isolated from marine animals.

    abstract::Six bacterial strains were isolated from healthy marine organisms that were collected from the coast of the Kanto area in Japan. Phylogenetic analysis based on 16S rDNA sequence similarity showed that the six isolates formed a separate cluster in the gamma-Proteobacteria and were related to the genera Alteromonas and ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02778-0

    authors: Kurahashi M,Yokota A

    更新日期:2004-05-01 00:00:00

  • Thalassobius litorarius sp. nov., isolated from a tidal flat.

    abstract::A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, belonging to the family Rhodobacteraceae, designated strain MME-075T, was isolated from a tidal flat. Strain MME-075T grew with 1-5% (w/v) NaCl at 20-35 °C and at pH 7-9. Optimal growth occurred with 2% (w/v) NaCl at 25-30 °C and at pH 7. The dominan...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000931

    authors: Park I,Cha IT,Seo MJ

    更新日期:2016-04-01 00:00:00

  • Treponema parvum sp. nov., a small, glucoronic or galacturonic acid-dependent oral spirochaete from lesions of human periodontitis and acute necrotizing ulcerative gingivitis.

    abstract::Small oral spirochaetes with a strict dependence on either glucuronic acid (GluA) or galacturonic acid (GalA) were isolated from European patients with periodontitis and from Chinese patients with either gingivitis or acute necrotizing ulcerative gingivitis (ANUG). Thirteen such isolates were similar phenotypically to...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-3-955

    authors: Wyss C,Dewhirst FE,Gmür R,Thurnheer T,Xue Y,Schüpbach P,Guggenheim B,Paster BJ

    更新日期:2001-05-01 00:00:00

  • Tropicibacter multivorans sp. nov., an aerobic alphaproteobacterium isolated from surface seawater.

    abstract::Strain MD5T, an aerobic marine alphaproteobacterium, was isolated from Mediterranean seawater at Malvarrosa beach, Valencia, Spain. The strain was characterized in a polyphasic study and was placed phylogenetically within the Roseobacter clade in the family Rhodobacteraceae. Phylogenetic analysis based on 16S rRNA gen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.030973-0

    authors: Lucena T,Pujalte MJ,Ruvira MA,Garay E,Macián MC,Arahal DR

    更新日期:2012-04-01 00:00:00

  • Yeasts isolated from a fungus-growing ant nest, including the description of Trichosporon chiarellii sp. nov., an anamorphic basidiomycetous yeast.

    abstract::Thirty-nine yeast strains were recovered from a field nest of a primitive and putative novel attine ant species in the genus Myrmicocrypta (Hymenoptera: Formicidae: tribe Attini). Yeasts isolated from the fungus garden and waste deposit included Candida dubliniensis, Candida oleophila, Cryptococcus haglerorum and Hans...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.015727-0

    authors: Pagnocca FC,Legaspe MFC,Rodrigues A,Ruivo CCC,Nagamoto NS,Bacci M,Forti LC

    更新日期:2010-06-01 00:00:00

  • Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus.

    abstract::The genus Bacillus is a phylogenetically incoherent taxon with members of the group lacking a common evolutionary history. Comprising aerobic and anaerobic spore-forming bacteria, no characteristics are known that can distinguish species of this genus from other similar endospore-forming genera. With the availability ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.048488-0

    authors: Bhandari V,Ahmod NZ,Shah HN,Gupta RS

    更新日期:2013-07-01 00:00:00

  • Alcanivorax gelatiniphagus sp. nov., a marine bacterium isolated from tidal flat sediments enriched with crude oil.

    abstract::A Gram-reaction-negative, rod-shaped marine bacterium, designated MEBiC08158(T), was isolated from sediments collected from Taean County, Korea, near the Hebei Spirit tanker oil spill accident. 16S rRNA gene sequence analysis revealed that strain MEBiC08158(T) was closely related to Alcanivorax marinus R8-12(T) (99.5%...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000244

    authors: Kyoung Kwon K,Hye Oh J,Yang SH,Seo HS,Lee JH

    更新日期:2015-07-01 00:00:00

  • Polaribacter haliotis sp. nov., isolated from the gut of abalone Haliotis discus hannai.

    abstract::A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated RA4-7T, was isolated from the gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island, South Korea, and subjected to a polyphasic taxonomic study. RA4-7T grew optimally at 25 °C, at pH ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001557

    authors: Kim YO,Park IS,Park S,Nam BH,Park JM,Kim DG,Yoon JH

    更新日期:2016-12-01 00:00:00

  • Roseibacterium elongatum gen. nov., sp. nov., an aerobic, bacteriochlorophyll-containing bacterium isolated from the west coast of Australia.

    abstract::A novel aerobic, chemoheterotrophic, bacteriochlorophyll-containing bacterium, strain OCh 323T, was isolated from sand at Monkey Mia, Shark Bay, located on the west coast of Australia. The cells were Gram-negative, non-motile rods of variable length; one or both cell poles was narrower. Bacteriochlorophyll a was synth...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02094-0

    authors: Suzuki T,Mori Y,Nishimura Y

    更新日期:2006-02-01 00:00:00

  • Alicyclobacillus sendaiensis sp. nov., a novel acidophilic, slightly thermophilic species isolated from soil in Sendai, Japan.

    abstract::An acidophilic, slightly thermophilic bacterium, designated strain NTAP-1T, that produces a thermostable extracellular acid collagenase activity with potential industrial applications was isolated from soil of Aoba-yama Park, Sendai, Japan. The temperature range for growth was 40-65 degrees C, with an optimum at 55 de...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02409-0

    authors: Tsuruoka N,Isono Y,Shida O,Hemmi H,Nakayama T,Nishino T

    更新日期:2003-07-01 00:00:00

  • Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.

    abstract::Three groups of Gram-stain-negative, obligately anaerobic, rod or coccoid-shaped bacteria, which were phylogenetically assigned in the genus Alistipes belonging to the family Rikenellaceae in the phylum Bacteroidetes, were isolated from the faecal samples of healthy Japanese humans. Group I (strains 5CBH24T and 6CPBBH...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003778

    authors: Sakamoto M,Ikeyama N,Ogata Y,Suda W,Iino T,Hattori M,Ohkuma M

    更新日期:2020-01-01 00:00:00

  • Cystofilobasidium lacus-mascardii sp. nov., a basidiomycetous yeast species isolated from aquatic environments of the Patagonian Andes, and Cystofilobasidium macerans sp. nov., the sexual stage of Cryptococcus macerans.

    abstract::Here, we report on two novel sexual basidiomycetous red yeast species of the genus Cystofilobasidium. Cystofilobasidium lacus-mascardii sp. nov. is based on sexually compatible strains isolated from Lake Mascardi, an ultraoligotrophic lake in north-western Patagonia, Argentina. Following the discovery of the first iso...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.004390-0

    authors: Libkind D,Gadanho M,van Broock M,Sampaio JP

    更新日期:2009-03-01 00:00:00

  • Planosporangium mesophilum sp. nov., isolated from rhizosphere soil of Bletilla striata.

    abstract::A Gram-stain-positive, non-motile actinomycete, designated strain YIM 48875(T), was isolated from rhizosphere soil of Bletilla striata and its taxonomic position was established by using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequence data showed that strain YIM 48875(T) belonged to the ge...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.026096-0

    authors: Cao YR,Wang Q,Jin RX,Jiang Y,Lai HX,He WX,Xu LH,Jiang CL

    更新日期:2011-06-01 00:00:00

  • Cribrihabitans neustonicus sp. nov., isolated from coastal surface seawater, and emended description of the genus Cribrihabitans Chen et al. 2014.

    abstract::A Gram-stain-negative, strictly aerobic, rod- or oval-shaped, motile, non-spore-forming bacterium, designated strain CC-AMHB-3(T), was isolated from coastal surface seawater off Hualien, Taiwan. The novel strain showed high pairwise 16S rRNA gene sequence similarities to Ruegeria mobilis NBRC 101030(T) (96.5%), Rueger...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.066142-0

    authors: Hameed A,Shahina M,Lin SY,Lai WA,Liu YC,Hsu YH,Young CC

    更新日期:2014-11-01 00:00:00

  • Reclassification of Thermoterrabacterium ferrireducens as Carboxydothermus ferrireducens comb. nov., and emended description of the genus Carboxydothermus.

    abstract::Similarities in phylogeny and metabolic properties between the type species of two monospecific genera of thermophilic anaerobic bacteria, Carboxydothermus hydrogenoformans and Thermoterrabacterium ferrireducens, and analysis of their recently available 16S rRNA gene sequences warranted clarification of their taxonomi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64503-0

    authors: Slobodkin AI,Sokolova TG,Lysenko AM,Wiegel J

    更新日期:2006-10-01 00:00:00

  • Fictibacillus aquaticus sp. nov., isolated from downstream river water.

    abstract::A Gram-stain-positive, facultatively anaerobic bacterial strain, GDSW-R2A3T, was isolated from a downstream water sample collected from the river Ganges, India. Analysis of the 16S rRNA gene sequence of strain GDSW-R2A3T revealed its affiliation to the family Bacillaceae. Further analysis using a polyphasic approach r...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002474

    authors: Pal D,Bhardwaj A,Kaur N,Sudan SK,Bisht B,Kumari M,Vyas B,Krishnamurthi S,Mayilraj S

    更新日期:2018-01-01 00:00:00

  • Aquiflexum aquatile sp. nov., isolated from lake water.

    abstract::A Gram-stain-negative, facultative anaerobic, red-coloured, rod-shaped, non-flagellated, non-motile and non-gliding bacterium, designated strain Z0201T, was isolated from lake water in Yunnan, China (26° 16' N, 99° 94' E). Cells of strain Z0201T were 0.2-0.4 µm wide and 1.4-2.5 µm long, catalase-positive and oxidase-n...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003405

    authors: Wang XT,Wang XM,Zheng WS,Zhang XK,Du ZJ

    更新日期:2019-07-01 00:00:00

  • Pseudomonas pelagia sp. nov., isolated from a culture of the Antarctic green alga Pyramimonas gelidicola.

    abstract::Two Gram-negative, strictly aerobic bacterial strains, designated CL-AP6(T) and CL-AP22, were isolated from a culture of a green alga, Pyramimonas gelidicola, established from the Antarctic. Cells of the strains were straight rods and motile by means of a single polar flagellum. The strains grew with 0.5-8 % (w/v) NaC...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.008102-0

    authors: Hwang CY,Zhang GI,Kang SH,Kim HJ,Cho BC

    更新日期:2009-12-01 00:00:00

  • Saturnispora bothae sp. nov., isolated from rotting wood.

    abstract::Two strains representing a novel species of the genus Saturnispora were isolated from rotting wood samples collected in an Atlantic Rainforest site in Brazil. Analyses of the sequences of the D1/D2 domains of the rRNA gene showed that this novel species belongs to a subclade in the Saturnispora clade formed by Saturni...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001269

    authors: Morais CG,Lara CA,Borelli BM,Cadete RM,Moreira JD,Lachance MA,Rosa CA

    更新日期:2016-10-01 00:00:00

  • Pseudoxanthomonas yeongjuensis sp. nov., isolated from soil cultivated with Korean ginseng.

    abstract::A Gram-negative, strictly aerobic, non-spore-forming bacterium, motile by means of single polar flagellum and rod-shaped, designated strain GR12-1(T), was isolated from soil of a ginseng field in Yeongju region, Korea. Phylogenetic analysis based on 16S rRNA gene sequences indicated that this strain is related to memb...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64427-0

    authors: Yoo SH,Weon HY,Kim BY,Kim JH,Baek YK,Kwon SW,Go SJ,Stackebrandt E

    更新日期:2007-03-01 00:00:00

  • Conservation of Rhodococcus equi (Magnusson 1923) Goodfellow and Alderson 1977 and rejection of Rhodococcus hoagii (Morse 1912) Kämpfer et al. 2014.

    abstract::A recent taxonomic study confirmed the synonymy of Rhodococcus equi (Magnusson 1923) Goodfellow and Alderson 1977 and Corynebacterium hoagii (Morse 1912) Eberson 1918. As a result, both R. equi and C. hoagii were reclassified as Rhodococcus hoagii comb. nov. in application of the principle of priority of the Prokaryot...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004090

    authors: Vázquez-Boland JA,Scortti M,Meijer WG

    更新日期:2020-05-01 00:00:00

  • Winogradskyella rapida sp. nov., isolated from protein-enriched seawater.

    abstract::Flavobacteria are emerging as an important group of organisms associated with the degradation of complex organic matter in aquatic environments. A novel Gram-reaction-negative, heterotrophic, rod-shaped, aerobic, yellow-pigmented and gliding bacterium, strain SCB36T, was isolated from a protein-enriched seawater sampl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.008334-0

    authors: Pinhassi J,Nedashkovskaya OI,Hagström A,Vancanneyt M

    更新日期:2009-09-01 00:00:00

  • Methylomarinovum caldicuralii gen. nov., sp. nov., a moderately thermophilic methanotroph isolated from a shallow submarine hydrothermal system, and proposal of the family Methylothermaceae fam. nov.

    abstract::A novel methane-oxidizing bacterium, strain IT-9(T), was isolated from a shallow submarine hydrothermal system occurring in a coral reef in Japan. Strain IT-9(T) was a Gram-negative, aerobic, motile, coccoid or oval-shaped bacterium with the distinctive intracytoplasmic membrane arrangement of a type I methanotroph. S...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.058172-0

    authors: Hirayama H,Abe M,Miyazaki M,Nunoura T,Furushima Y,Yamamoto H,Takai K

    更新日期:2014-03-01 00:00:00

  • Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol.

    abstract::Two strains of Gram-negative, aerobic, non-pigmented, non-motile, rod-shaped, methane-oxidizing bacteria were isolated from an acidic forest cambisol near Marburg, Germany, and were designated as strains BL2(T) and A1. These bacteria were morphologically and phenotypically similar to Methylocella palustris K(T). The c...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02481-0

    authors: Dunfield PF,Khmelenina VN,Suzina NE,Trotsenko YA,Dedysh SN

    更新日期:2003-09-01 00:00:00

  • Ulvibacter antarcticus sp. nov., isolated from Antarctic coastal seawater.

    abstract::A seawater bacterium, designated IMCC3101(T), was isolated from Antarctic coastal seawater. The strain was Gram-negative, chemoheterotrophic, obligately aerobic, pigmented dark yellow (flexirubin-type pigments) and devoid of gliding and flagellar motility. On the basis of 16S rRNA gene sequence comparisons, the most c...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65265-0

    authors: Choi TH,Lee HK,Lee K,Cho JC

    更新日期:2007-12-01 00:00:00

  • Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales.

    abstract::A novel mesophilic, hydrogenotrophic methanogen, designated strain TNR(T), was isolated from an anaerobic, propionate-degradation enrichment culture that was originally established from a rice field soil sample from Taiwan. Cells were non-motile rods, 2.0-6.5 µm long by 0.3 µm wide. Filamentous (up to about 100 µm) an...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.035048-0

    authors: Sakai S,Ehara M,Tseng IC,Yamaguchi T,Bräuer SL,Cadillo-Quiroz H,Zinder SH,Imachi H

    更新日期:2012-06-01 00:00:00

  • Salegentibacter sediminis sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from coastal sediment.

    abstract::A Gram-stain-negative, aerobic, non-motile, rod-shaped (0.2-0.3×0.8-1.4 µm) and yellow-pigmented bacterium, designated K5023T, was isolated from marine sediment obtained off the coast of Weihai, China. Strain K5023T was found to grow at 16-37 °C (optimum, 33 °C), at pH 6.5-8.0 (optimum, 7.0-7.5) and in the presence of...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002849

    authors: Liang QY,Xu ZX,Zhang J,Chen GJ,Du ZJ

    更新日期:2018-07-01 00:00:00

  • Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.

    abstract::Limit-dilution procedures were used to isolate seven, helically coiled bacterial strains from faeces of swine that constituted two unidentified taxa. Comparative 16S rRNA gene sequence analysis showed highest similarity values with species of the genus Treponema indicating that the isolates are members of this genus. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63388-0

    authors: Nordhoff M,Taras D,Macha M,Tedin K,Busse HJ,Wieler LH

    更新日期:2005-07-01 00:00:00