Towards integrating vectors for gene therapy: expression of functional bacteriophage MuA and MuB proteins in mammalian cells.

Abstract:

:Bacteriophage Mu has one of the best studied, most efficient and largest transposition machineries of the prokaryotic world. To harness this attractive integration machinery for use in mammalian cells, we cloned the coding sequences of the phage factors MuA and MuB in a eukaryotic expression cassette and fused them to a FLAG epitope and a SV40-derived nuclear localization signal. We demonstrate that these N-terminal extensions were sufficient to target the Mu proteins to the nucleus, while their function in Escherichia coli was not impeded. In vivo transposition in mammalian cells was analysed by co-transfection of the MuA and MuB expression vectors with a donor construct, which contained a miniMu transposon carrying a Hygromycin-resistance marker (Hyg(R)). In all co-transfections, a significant but moderate (up to 2.7-fold) increase in Hyg(R) colonies was obtained if compared with control experiments in which the MuA vector was omitted. To study whether the increased efficiency was the result of bona fide Mu transposition, integrated vector copies were cloned from 43 monoclonal and one polyclonal cell lines. However, in none of these clones, the junction between the vector and the chromosomal DNA was localized precisely at the border of the Att sites. From our data we conclude that expression of MuA and MuB increases the integration of miniMu vectors in mammalian cells, but that this increase is not the result of bona fide Mu-induced transposition.

journal_name

Nucleic Acids Res

journal_title

Nucleic acids research

authors

Schagen FH,Rademaker HJ,Cramer SJ,van Ormondt H,van der Eb AJ,van de Putte P,Hoeben RC

doi

10.1093/nar/28.23.e104

keywords:

subject

Has Abstract

pub_date

2000-12-01 00:00:00

pages

E104

issue

23

eissn

0305-1048

issn

1362-4962

journal_volume

28

pub_type

杂志文章
  • A diminutive and specific RNA binding site for L-tryptophan.

    abstract::Selection for amino acid affinity by elution of RNAs from tryptophan-Sepharose using free L-tryptophan evokes one sequence predominantly (K(D) = 12 microM), a symmetrical internal loop of 3 nt per side. Though we have also isolated larger sequences with affinity for tryptophan, successively squeezed selection in rando...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gki861

    authors: Majerfeld I,Yarus M

    更新日期:2005-09-25 00:00:00

  • The wobble nucleotide-excising anticodon nuclease RloC is governed by the zinc-hook and DNA-dependent ATPase of its Rad50-like region.

    abstract::The conserved bacterial anticodon nuclease (ACNase) RloC and its phage-excluding homolog PrrC comprise respective ABC-adenosine triphosphatase (ATPase) and ACNase N- and C-domains but differ in three key attributes. First, prrC is always linked to an ACNase silencing, DNA restriction-modification (R-M) locus while rlo...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks593

    authors: Klaiman D,Steinfels-Kohn E,Krutkina E,Davidov E,Kaufmann G

    更新日期:2012-09-01 00:00:00

  • Analysis of rRNA processing and translation in mammalian cells using a synthetic 18S rRNA expression system.

    abstract::Analysis of processing, assembly, and function of higher eukaryotic ribosomal RNA (rRNA) has been hindered by the lack of an expression system that enables rRNA to be modified and then examined functionally. Given the potential usefulness of such a system, we have developed one for mammalian 18S rRNA. We inserted a se...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks530

    authors: Burman LG,Mauro VP

    更新日期:2012-09-01 00:00:00

  • Structure and activity of the only human RNase T2.

    abstract::Mutations in the gene of human RNase T2 are associated with white matter disease of the human brain. Although brain abnormalities (bilateral temporal lobe cysts and multifocal white matter lesions) and clinical symptoms (psychomotor impairments, spasticity and epilepsy) are well characterized, the pathomechanism of RN...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks614

    authors: Thorn A,Steinfeld R,Ziegenbein M,Grapp M,Hsiao HH,Urlaub H,Sheldrick GM,Gärtner J,Krätzner R

    更新日期:2012-09-01 00:00:00

  • Recognition of polynucleotides by antibodies to poly(I), poly(C).

    abstract::The binding of anti poly(I). poly (C) Fab fragments to double or triple stranded polynucletides has been studied by fluorescence. Association constants were deduced from competition experiments. The comparison of the association constants leads to the conclusion that several atoms of the base residues do not interact ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/3.12.3337

    authors: Guigues M,Leng M

    更新日期:1976-12-01 00:00:00

  • Microfluidic automated plasmid library enrichment for biosynthetic gene cluster discovery.

    abstract::Microbial biosynthetic gene clusters are a valuable source of bioactive molecules. However, because they typically represent a small fraction of genomic material in most metagenomic samples, it remains challenging to deeply sequence them. We present an approach to isolate and sequence gene clusters in metagenomic samp...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkaa131

    authors: Xu P,Modavi C,Demaree B,Twigg F,Liang B,Sun C,Zhang W,Abate AR

    更新日期:2020-05-07 00:00:00

  • A long stringent sequence signal for programmed chromosome breakage in Tetrahymena thermophila.

    abstract::Programmed chromosome breakage occurs at 50-200 specific sites in the genome of Tetrahymena thermo-phila during somatic nuclear (macronuclear) differentiation. Previous studies have identified a 15 bp sequence, the Cbs (for chromosome breakage sequence), that is necessary and sufficient to specify these sites. In this...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/28.4.895

    authors: Fan Q,Yao MC

    更新日期:2000-02-15 00:00:00

  • RAD51AP2, a novel vertebrate- and meiotic-specific protein, shares a conserved RAD51-interacting C-terminal domain with RAD51AP1/PIR51.

    abstract::Many interacting proteins regulate and/or assist the activities of RAD51, a recombinase which plays a critical role in both DNA repair and meiotic recombination. Yeast two-hybrid screening of a human testis cDNA library revealed a new protein, RAD51AP2 (RAD51 Associated Protein 2), that interacts strongly with RAD51. ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkl665

    authors: Kovalenko OV,Wiese C,Schild D

    更新日期:2006-01-01 00:00:00

  • Noncoding RNAs database (ncRNAdb).

    abstract::The noncoding RNA database (ncRNAdb) was created as a source of information on RNA molecules, which do not possess protein-coding capacity. It is now widely accepted that, in addition to constitutively expressed, housekeeping or infrastructural RNAs, there is a wide variety of RNAs participating in mechanisms involved...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkl994

    authors: Szymanski M,Erdmann VA,Barciszewski J

    更新日期:2007-01-01 00:00:00

  • The Frog Prince: a reconstructed transposon from Rana pipiens with high transpositional activity in vertebrate cells.

    abstract::Members of the Tc1/mariner superfamily of transposable elements isolated from vertebrates are transpositionally inactive due to the accumulation of mutations in their transposase genes. A novel open reading frame-trapping method was used to isolate uninterrupted transposase coding regions from the genome of the frog s...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkg910

    authors: Miskey C,Izsvák Z,Plasterk RH,Ivics Z

    更新日期:2003-12-01 00:00:00

  • The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism.

    abstract::Enzymes of intermediary metabolism are often reported to have moonlighting functions as RNA-binding proteins and have regulatory roles beyond their primary activities. Human serine hydroxymethyltransferase (SHMT) is essential for the one-carbon metabolism, which sustains growth and proliferation in normal and tumour c...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkz129

    authors: Guiducci G,Paone A,Tramonti A,Giardina G,Rinaldo S,Bouzidi A,Magnifico MC,Marani M,Menendez JA,Fatica A,Macone A,Armaos A,Tartaglia GG,Contestabile R,Paiardini A,Cutruzzolà F

    更新日期:2019-05-07 00:00:00

  • Database resources of the National Center for Biotechnology Information.

    abstract::The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals. The Entrez system provides search and re...

    journal_title:Nucleic acids research

    pub_type: 杂志文章,评审

    doi:10.1093/nar/gkaa892

    authors: Sayers EW,Beck J,Bolton EE,Bourexis D,Brister JR,Canese K,Comeau DC,Funk K,Kim S,Klimke W,Marchler-Bauer A,Landrum M,Lathrop S,Lu Z,Madden TL,O'Leary N,Phan L,Rangwala SH,Schneider VA,Skripchenko Y,Wang J,Ye J,

    更新日期:2021-01-08 00:00:00

  • Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer.

    abstract::A 15-mer DNA aptamer (named TBA) adopts a G-quadruplex structure that strongly inhibits fibrin-clot formation by binding to thrombin. We have performed thermodynamic analysis, binding affinity and biological activity studies of TBA variants modified by unlocked nucleic acid (UNA) monomers. UNA-U placed in position U3,...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkq823

    authors: Pasternak A,Hernandez FJ,Rasmussen LM,Vester B,Wengel J

    更新日期:2011-02-01 00:00:00

  • The Pfam protein families database.

    abstract::Pfam is a widely used database of protein families, currently containing more than 13,000 manually curated protein families as of release 26.0. Pfam is available via servers in the UK (http://pfam.sanger.ac.uk/), the USA (http://pfam.janelia.org/) and Sweden (http://pfam.sbc.su.se/). Here, we report on changes that ha...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkr1065

    authors: Punta M,Coggill PC,Eberhardt RY,Mistry J,Tate J,Boursnell C,Pang N,Forslund K,Ceric G,Clements J,Heger A,Holm L,Sonnhammer EL,Eddy SR,Bateman A,Finn RD

    更新日期:2012-01-01 00:00:00

  • Dihydropyrimidine amidohydrolases and dihydroorotases share the same origin and several enzymatic properties.

    abstract::Slime mold, plant and insect dihydropyrimidine amidohydrolases (DHPases, EC 3.5.2.2), which catalyze the second step of pyrimidine and several anti-cancer drug degradations, were cloned and shown to functionally replace a defective DHPase enzyme in the yeast Saccharomyces kluyveri. The yeast and slime mold DHPases wer...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkg258

    authors: Gojkovic Z,Rislund L,Andersen B,Sandrini MP,Cook PF,Schnackerz KD,Piskur J

    更新日期:2003-03-15 00:00:00

  • Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch.

    abstract::Applications of conditional gene expression, whether for therapeutic or basic research purposes, are increasingly requiring mammalian gene control systems that exhibit far tighter control properties. While numerous approaches have been used to improve the widely used Tet-regulatory system, many applications, particula...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkn443

    authors: Greber D,El-Baba MD,Fussenegger M

    更新日期:2008-09-01 00:00:00

  • Quantitation of DNA double-strand break resection intermediates in human cells.

    abstract::5' strand resection at DNA double strand breaks (DSBs) is critical for homologous recombination (HR) and genomic stability. Here we develop a novel method to quantitatively measure single-stranded DNA intermediates in human cells and find that the 5' strand at endonuclease-generated break sites is resected up to 3.5 k...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkt1309

    authors: Zhou Y,Caron P,Legube G,Paull TT

    更新日期:2014-02-01 00:00:00

  • Analysis of large nucleic acid dot matrices on small computers.

    abstract::A UCSD Pascal program was developed which can analyze nucleic acid dot matrices of up to 9500 X 9500 in size on the Apple II computer. Although matrices of such size consume large amounts of computer memory, this program minimizes these problems by analyzing only small strips of the matrix at a time, and then transfer...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/12.1part2.767

    authors: Zweig SE

    更新日期:1984-01-11 00:00:00

  • Analysis of the interaction with the hepatitis C virus mRNA reveals an alternative mode of RNA recognition by the human La protein.

    abstract::Human La protein is an essential factor in the biology of both coding and non-coding RNAs. In the nucleus, La binds primarily to 3' oligoU containing RNAs, while in the cytoplasm La interacts with an array of different mRNAs lacking a 3' UUU(OH) trailer. An example of the latter is the binding of La to the IRES domain...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkr890

    authors: Martino L,Pennell S,Kelly G,Bui TT,Kotik-Kogan O,Smerdon SJ,Drake AF,Curry S,Conte MR

    更新日期:2012-02-01 00:00:00

  • Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition.

    abstract::Previously, we have shown that all class-1 polypeptide release factors (RFs) share a common glycine-glycine-glutamine (GGQ) motif, which is critical for RF activity. Here, we subjected to site-directed mutagenesis two invariant amino acids, Gln185 and Arg189, situated in the GGQ minidomain of human eRF1, followed by d...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/29.19.3982

    authors: Seit-Nebi A,Frolova L,Justesen J,Kisselev L

    更新日期:2001-10-01 00:00:00

  • Analysis of DNA sequences which regulate the transcription of herpes simplex virus immediate early gene 3: DNA sequences required for enhancer-like activity and response to trans-activation by a virion polypeptide.

    abstract::The far upstream region of herpes simplex virus (HSV) immediate early (IE) gene 3 has previously been shown to increase gene expression in an enhancer-like manner, and to contain sequences which respond to stimulation of transcription by a virion polypeptide, Vmw65. To analyse the specific DNA sequences which mediate ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/14.2.929

    authors: Bzik DJ,Preston CM

    更新日期:1986-01-24 00:00:00

  • Ordered processing of Escherichia coli 23S rRNA in vitro.

    abstract::In an RNase III-deficient strain of E. coli 23S pre-rRNA accumulates unprocessed in 50S ribosomes and in polysomes. These ribosomes provide a substrate for the analysis of rRNA maturation in vitro. S1 nuclease protection analysis of the products obtained in in vitro processing reactions demonstrates that 23S rRNA proc...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/13.14.5041

    authors: Sirdeshmukh R,Schlessinger D

    更新日期:1985-07-25 00:00:00

  • YPL.db: the Yeast Protein Localization database.

    abstract::The Yeast Protein Localization database (YPL.db) contains information about the localization patterns of yeast proteins resulting from microscopic analyses. The data and parameters of the experiments to obtain the localization information, together with images from confocal or video microscopy, are stored in a relatio...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/30.1.80

    authors: Habeler G,Natter K,Thallinger GG,Crawford ME,Kohlwein SD,Trajanoski Z

    更新日期:2002-01-01 00:00:00

  • An alternative protein factor which binds the internal promoter of Xenopus 5S ribosomal RNA genes.

    abstract::In small oocytes of Xenopus species, two sets of 5S RNA genes, oocyte-type and somatic-type, are fully activated. The 5S RNA transcripts are temporarily stored, half in association with TFIIIA to form a 7S particle, the other half in association with tRNA and two proteins (p48 and p43) to form a 42S particle. It has b...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/15.21.8679

    authors: Barrett P,Sommerville J

    更新日期:1987-11-11 00:00:00

  • Expression of the human interferon-gamma cDNA in yeast.

    abstract::Several plasmids which direct the expression of human interferon-gamma (IFN-gamma) cDNA in the yeast Saccharomyces cerevisiae under the transcriptional control of the 3-phosphoglycerate kinase (PGK) promoter have been constructed. Up to 25 x 10(6) units per liter culture of biologically active IFN-gamma are synthesize...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/11.6.1819

    authors: Derynck R,Singh A,Goeddel DV

    更新日期:1983-03-25 00:00:00

  • Structural and functional properties of ribosomal protein L7 from humans and rodents.

    abstract::By subtractive screening of a library made from mRNA of lipopolysaccharide (LPS)-stimulated mouse B lymphocytes we isolated cDNA-clones encoding the ribosomal protein L7. Human L7 mRNA was cloned from activated T-lymphocytes. Although no specific function of L7 in the translation apparatus is known as yet, it should b...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/21.2.223

    authors: Hemmerich P,von Mikecz A,Neumann F,Sözeri O,Wolff-Vorbeck G,Zoebelein R,Krawinkel U

    更新日期:1993-01-25 00:00:00

  • Transcriptionally competent chromatin assembled with exogenous histones in a yeast whole cell extract.

    abstract::We describe a cell-free chromatin assembly system derived from the yeast Saccharomyces cerevisiae, which efficiently packages DNA into minichromosomes in a reaction dependent on exogenous core histones and an ATP-regenerating system. Both supercoiled and relaxed plasmid DNA serve as templates for nucleosomal loading i...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gnh107

    authors: Rodríguez-Campos A,Koop R,Faraudo S,Beato M

    更新日期:2004-07-28 00:00:00

  • Altered cleavage of DNA sequences by bleomycin and its deglycosylated derivative in the presence of actinomycin.

    abstract::The antitumour antibiotics bleomycin and actinomycin are commonly used therapeutically in combination. One causes metal ion- and oxygen-dependent oxidative damage to DNA, while the other acts at the level of DNA via intercalation of its phenoxazone chromophore and probable inhibition of topoisomerases. Both drugs bind...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/25.8.1516

    authors: Bailly C,Kénani A,Waring MJ

    更新日期:1997-04-15 00:00:00

  • Human gamma-globin gene promoter element regulates human beta-globin gene developmental specificity.

    abstract::The persistence of fetal hemoglobin in many patients with deletion type beta thalassemias and the expression patterns of human globin genes in transgenic mice suggest that gamma- to beta-globin gene switching results primarily from competition of gamma- and beta-globin genes for interaction with the beta-globin locus ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/28.14.2736

    authors: Ryan TM,Sun CW,Ren J,Townes TM

    更新日期:2000-07-15 00:00:00

  • Thioflavin T binds dimeric parallel-stranded GA-containing non-G-quadruplex DNAs: a general approach to lighting up double-stranded scaffolds.

    abstract::A molecular rotor thioflavin T (ThT) is usually used as a fluorescent ligand specific for G-quadruplexes. Here, we demonstrate that ThT can tightly bind non-G-quadruplex DNAs with several GA motifs and dimerize them in a parallel double-stranded mode, accompanied by over 100-fold enhancement in the fluorescence emissi...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkx942

    authors: Liu S,Peng P,Wang H,Shi L,Li T

    更新日期:2017-12-01 00:00:00