Hepatitis delta virus minimal substrates competent for editing by ADAR1 and ADAR2.

Abstract:

:A host-mediated RNA-editing event allows hepatitis delta virus (HDV) to express two essential proteins, the small delta antigen (HDAg-S) and the large delta antigen (HDAg-L), from a single open reading frame. One or several members of the ADAR (adenosine deaminases that act on RNA) family are thought to convert the adenosine to an inosine (I) within the HDAg-S amber codon in antigenomic RNA. As a consequence of replication, the UIG codon is converted to a UGG (tryptophan [W]) codon in the resulting HDAg-L message. Here, we used a novel reporter system to monitor the editing of the HDV amber/W site in the absence of replication. In cultured cells, we observed that both human ADAR1 (hADAR1) and hADAR2 were capable of editing the amber/W site with comparable efficiencies. We also defined the minimal HDV substrate required for hADAR1- and hADAR2-mediated editing. Only 24 nucleotides from the amber/W site were sufficient to enable efficient editing by hADAR1. Hence, the HDV amber/W site represents the smallest ADAR substrate yet identified. In contrast, the minimal substrate competent for hADAR2-mediated editing contained 66 nucleotides.

journal_name

J Virol

journal_title

Journal of virology

authors

Sato S,Wong SK,Lazinski DW

doi

10.1128/jvi.75.18.8547-8555.2001

subject

Has Abstract

pub_date

2001-09-01 00:00:00

pages

8547-55

issue

18

eissn

0022-538X

issn

1098-5514

journal_volume

75

pub_type

杂志文章
  • Yellow fever/Japanese encephalitis chimeric viruses: construction and biological properties.

    abstract::A system has been developed for generating chimeric yellow fever/Japanese encephalitis (YF/JE) viruses from cDNA templates encoding the structural proteins prM and E of JE virus within the backbone of a molecular clone of the YF17D strain. Chimeric viruses incorporating the proteins of two JE strains, SA14-14-2 (human...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.4.3095-3101.1999

    authors: Chambers TJ,Nestorowicz A,Mason PW,Rice CM

    更新日期:1999-04-01 00:00:00

  • Mucosal and systemic antibody responses in humans infected with simian foamy virus.

    abstract::Simian foamy virus (SFV) infection and the subsequent immune response are not well characterized. Blood plasma, saliva, and urine were obtained from four humans and nine chimpanzees persistently infected with chimpanzee-type SFV for an unknown length of time. SFV-specific immunoglobulin G (IgG) antibodies, but not IgA...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.20.13186-13189.2005

    authors: Cummins JE Jr,Boneva RS,Switzer WM,Christensen LL,Sandstrom P,Heneine W,Chapman LE,Dezzutti CS

    更新日期:2005-10-01 00:00:00

  • Characterization of unintegrated retroviral DNA with long terminal repeat-associated cell-derived inserts.

    abstract::We have used a replication-competent shuttle vector based on the genome of Rous sarcoma virus to characterize genomic rearrangements that occur during retrovirus replication. The strategy involved cloning circular DNA that was generated during an acute infection. While analyzing a class of retroviral DNA clones that a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.10.5735-5743.1992

    authors: Dunn MM,Olsen JC,Swanstrom R

    更新日期:1992-10-01 00:00:00

  • Analysis of human immunodeficiency virus type 1 nef gene sequences present in vivo.

    abstract::The nef genes of the human immunodeficiency viruses type 1 and 2 (HIV-1 and HIV-2) and the related simian immunodeficiency viruses (SIVs) encode a protein (Nef) whose role in virus replication and cytopathicity remains uncertain. As an attempt to elucidate the function of nef, we characterized the nucleotide and corre...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.8.4639-4650.1993

    authors: Shugars DC,Smith MS,Glueck DH,Nantermet PV,Seillier-Moiseiwitsch F,Swanstrom R

    更新日期:1993-08-01 00:00:00

  • Deletion of DNA encoding the first five transmembrane domains of Epstein-Barr virus latent membrane proteins 2A and 2B.

    abstract::A recombinant Epstein-Barr virus (EBV) was constructed, with a positive-selection marker inserted at the site of a deletion of a DNA segment which encodes the first five transmembrane domains of LMP2A and LMP2B. Despite the mutation, the mutant recombinant EBV was able to initiate and maintain primary B-lymphocyte gro...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.8.5068-5074.1993

    authors: Longnecker R,Miller CL,Tomkinson B,Miao XQ,Kieff E

    更新日期:1993-08-01 00:00:00

  • Human T-cell leukemia virus type I envelope protein maturation process: requirements for syncytium formation.

    abstract::The human T-cell leukemia virus type I (HTLV-I) envelope protein is synthesized as a gp61 precursor product cleaved into two mature proteins, a gp45 exterior protein and a gp20 anchoring the envelope at the cell membrane. Using N-glycosylation inhibitors and site-directed mutagenesis of the potential glycosylation sit...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.2.906-913.1992

    authors: Pique C,Pham D,Tursz T,Dokhélar MC

    更新日期:1992-02-01 00:00:00

  • Location of DNA-binding proteins and disulfide-linked proteins in vaccinia virus structural elements.

    abstract::Treatment with sodium dodecyl sulfate (SDS) converted the vaccinia virus strain IHD-J into particles of two types: (i) ghosts which possessed a thin-membrane vesicle derived from basement part of the virus membrane with attached lateral bodies and a membranous structure derived from the core wall and (ii) aggregates o...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.50.3.929-938.1984

    authors: Ichihashi Y,Oie M,Tsuruhara T

    更新日期:1984-06-01 00:00:00

  • Expression of varicella-zoster virus immediate-early regulatory protein IE63 in neurons of latently infected human sensory ganglia.

    abstract::Varicella-zoster virus (VZV) causes varicella and establishes latency in sensory nerve ganglia, but the characteristics of VZV latency are not well defined. Immunohistochemical detection of the VZV immediate-early 63 (IE63) protein in ganglion neurons has been described, but there are significant discrepancies in esti...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02416-09

    authors: Zerboni L,Sobel RA,Ramachandran V,Rajamani J,Ruyechan W,Abendroth A,Arvin A

    更新日期:2010-04-01 00:00:00

  • Enhanced autointegration in hyperstable simian immunodeficiency virus capsid mutants blocked after reverse transcription.

    abstract::After entering a host cell, retroviruses such as simian immunodeficiency virus (SIV) uncoat, disassembling the viral capsid. Rates of uncoating that are too high and too low can be detrimental to the efficiency of infection. Rapid uncoating typically leads to blocks in reverse transcription, but the basis for replicat...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03239-12

    authors: Tipper C,Sodroski J

    更新日期:2013-04-01 00:00:00

  • The major neutralizing antigenic site on herpes simplex virus glycoprotein D overlaps a receptor-binding domain.

    abstract::Herpes simplex virus (HSV) entry is dependent on the interaction of virion glycoprotein D (gD) with one of several cellular receptors. We previously showed that gD binds specifically to two structurally dissimilar receptors, HveA and HveC. We have continued our studies by using (i) a panel of baculovirus-produced gD m...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.12.9879-9890.1999

    authors: Whitbeck JC,Muggeridge MI,Rux AH,Hou W,Krummenacher C,Lou H,van Geelen A,Eisenberg RJ,Cohen GH

    更新日期:1999-12-01 00:00:00

  • West Nile virus evades activation of interferon regulatory factor 3 through RIG-I-dependent and -independent pathways without antagonizing host defense signaling.

    abstract::The ability of viruses to control and/or evade the host antiviral response is critical to the establishment of a productive infection. We have previously shown that West Nile virus NY (WNV-NY) delays activation of interferon regulatory factor 3 (IRF-3), a transcription factor critical to the initiation of the antivira...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.80.6.2913-2923.2006

    authors: Fredericksen BL,Gale M Jr

    更新日期:2006-03-01 00:00:00

  • Tumor immunity against a simian virus 40 oncoprotein requires CD8+ T lymphocytes in the effector immune phase.

    abstract::The required activities of CD4(+) T cells and antibody against the virally encoded oncoprotein simian virus 40 (SV40) Tag have previously been demonstrated by our laboratory to be mediators in achieving antitumor responses and tumor protection through antibody-dependent cell-mediated cytotoxicity (ADCC). In this study...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01512-09

    authors: Lowe DB,Shearer MH,Jumper CA,Bright RK,Kennedy RC

    更新日期:2010-01-01 00:00:00

  • Major coexisting human immunodeficiency virus type 1 env gene subpopulations in the peripheral blood are produced by cells with similar turnover rates and show little evidence of genetic compartmentalization.

    abstract::A distinctive feature of chronic human immunodeficiency virus type 1 (HIV-1) infection is the presence of multiple coexisting genetic variants, or subpopulations, that comprise the HIV-1 population detected in the peripheral blood. Analysis of HIV-1 RNA decay dynamics during the initiation of highly active antiretrovi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02486-08

    authors: Ince WL,Harrington PR,Schnell GL,Patel-Chhabra M,Burch CL,Menezes P,Price RW,Eron JJ Jr,Swanstrom RI

    更新日期:2009-05-01 00:00:00

  • Vaccinia virus DNA ligase recruits cellular topoisomerase II to sites of viral replication and assembly.

    abstract::Vaccinia virus replication is inhibited by etoposide and mitoxantrone even though poxviruses do not encode the type II topoisomerases that are the specific targets of these drugs. Furthermore, one can isolate drug-resistant virus carrying mutations in the viral DNA ligase and yet the ligase is not known to exhibit sen...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02723-07

    authors: Lin YC,Li J,Irwin CR,Jenkins H,DeLange L,Evans DH

    更新日期:2008-06-01 00:00:00

  • The leader polypeptide of Theiler's murine encephalomyelitis virus is required for the assembly of virions in mouse L cells.

    abstract::Deletion of the entire leader polypeptide of the GDVII strain of Theiler's murine encephalomyelitis virus (TMEV) results in the production of an attenuated virus that grows in baby hamster kidney (BHK) cells but cannot grow at all in mouse L-929 cells. This study examined the reasons for the failure of dl-L, the GDVII...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.2.875-882.2000

    authors: Badshah C,Calenoff MA,Rundell K

    更新日期:2000-01-01 00:00:00

  • Stages in the nuclear association of the herpes simplex virus transcriptional activator protein ICP4.

    abstract::The nuclear localization of the herpes simplex virus transcriptional activator protein ICP4 was studied by indirect immunofluorescence. At early times after viral infection, ICP4 quickly localized to a diffuse intranuclear distribution. ICP4 later concentrated in globular compartments within the nucleus. The redistrib...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.2.276-284.1987

    authors: Knipe DM,Senechek D,Rice SA,Smith JL

    更新日期:1987-02-01 00:00:00

  • Identification of amino acids involved in recognition by dengue virus NS3-specific, HLA-DR15-restricted cytotoxic CD4+ T-cell clones.

    abstract::The majority of T-cell clones derived from a donor who experienced dengue illness following receipt of a live experimental dengue virus type 3 (DEN3) vaccine cross-reacted with all four serotypes of dengue virus, but some were serotype specific or only partially cross-reactive. The nonstructural protein, NS3, was immu...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.5.3108-3117.1996

    authors: Zeng L,Kurane I,Okamoto Y,Ennis FA,Brinton MA

    更新日期:1996-05-01 00:00:00

  • Effects of tunicamycin on rotavirus morphogenesis and infectivity.

    abstract::The functions of the two rotavirus glycoproteins were investigated by using tunicamycin and a variant of SA11 rotavirus having nonglycosylated VP7. Results showed that glycosylation of VP7 is not required for normal viral morphogenesis and infectivity and suggested that the nonstructural glycoprotein is involved in as...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.46.1.270-274.1983

    authors: Petrie BL,Estes MK,Graham DY

    更新日期:1983-04-01 00:00:00

  • Measles virus fusion: role of the cysteine-rich region of the fusion glycoprotein.

    abstract::Measles virus (MV) fusion requires the participation of both the fusion (F) and hemagglutinin (H) glycoproteins. The canine distemper virus fusion protein (CDVF) cannot substitute for the measles virus fusion protein (MVF) in this process. Introduction of restriction enzyme sites into the cDNAs of CDVF and MVF by site...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.68.11.7546-7548.1994

    authors: Wild TF,Fayolle J,Beauverger P,Buckland R

    更新日期:1994-11-01 00:00:00

  • Respiratory syncytial virus (RSV) G glycoprotein is not necessary for vaccine-enhanced disease induced by immunization with formalin-inactivated RSV.

    abstract::Following respiratory syncytial virus (RSV) challenge, mice immunized with RSV G or with formalin-inactivated RSV (FI-RSV) exhibit severe disease associated with type 2 cytokine production and pulmonary eosinophilia. This has led to the proposal that the presence of RSV G is the factor in FI-RSV that induces disease-e...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.11.6024-6032.2004

    authors: Johnson TR,Teng MN,Collins PL,Graham BS

    更新日期:2004-06-01 00:00:00

  • Design and intracellular activity of a human single-chain antibody to human immunodeficiency virus type 1 conserved gp41 epitope.

    abstract::A human lymphoid cell line (F172-D8) excreting a human immunodeficiency virus type 1 (HIV-1) anti-gp41 monoclonal antibody was used to construct a plasmid containing the cDNA of the single-chain variable fragment (scFvD8) corresponding to this antibody. A stable human osteosarcoma cell line was obtained which expresse...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.12.5712-5715.2000

    authors: Legastelois I,Desgranges C

    更新日期:2000-06-01 00:00:00

  • Serum- and calcium-induced differentiation of human keratinocytes is inhibited by the E6 oncoprotein of human papillomavirus type 16.

    abstract::Transfection of the E6 and E7 genes of the high-risk human papillomaviruses (HPVs) into primary genital keratinocytes generates colonies of proliferating cells which are resistant to calcium- and serum-induced terminal differentiation. To genetically map the HPV gene(s) responsible for this cellular phenotype, we clon...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.5.3269-3279.1996

    authors: Sherman L,Schlegel R

    更新日期:1996-05-01 00:00:00

  • Nerve growth factor deprivation results in the reactivation of latent herpes simplex virus in vitro.

    abstract::Primary sympathetic neuronal cultures were maintained for up to 5 weeks after inoculation with herpes simplex virus (HSV) without evidence of viral infection. Upon deprivation of nerve growth factor, the cultures produced infectious HSV, indicating that the cultures harbored latent HSV. This study demonstrates a funct...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.7.2311-2315.1987

    authors: Wilcox CL,Johnson EM Jr

    更新日期:1987-07-01 00:00:00

  • Response of foot-and-mouth disease virus to increased mutagenesis: influence of viral load and fitness in loss of infectivity.

    abstract::Passage of foot-and-mouth disease virus (FMDV) in cell culture in the presence of the mutagenic base analog 5-fluorouracil or 5-azacytidine resulted in decreases of infectivity and occasional extinction of the virus. Low viral loads and low viral fitness enhanced the frequency of extinction events; this finding was sh...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.18.8316-8323.2000

    authors: Sierra S,Dávila M,Lowenstein PR,Domingo E

    更新日期:2000-09-01 00:00:00

  • Epitope-mapping studies define two major neutralization sites on the vaccinia virus extracellular enveloped virus glycoprotein B5R.

    abstract::Vaccinia extracellular enveloped virus (EEV) is critical for cell-to-cell and long-range virus spread both in vitro and in vivo. The B5R gene encodes an EEV-specific type I membrane protein that is essential for efficient EEV formation. The majority of the B5R ectodomain consists of four domains with homology to short...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.10.6260-6271.2005

    authors: Aldaz-Carroll L,Whitbeck JC,Ponce de Leon M,Lou H,Hirao L,Isaacs SN,Moss B,Eisenberg RJ,Cohen GH

    更新日期:2005-05-01 00:00:00

  • The conserved carboxy terminus of the capsid domain of human immunodeficiency virus type 1 gag protein is important for virion assembly and release.

    abstract::The retroviral Gag precursor plays an important role in the assembly of virion particles. The capsid (CA) protein of the Gag molecule makes a major contribution to this process. In the crystal structure of the free CA protein of the human immunodeficiency virus type 1 (HIV-1), 11 residues of the C terminus were found ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.18.9675-9688.2004

    authors: Melamed D,Mark-Danieli M,Kenan-Eichler M,Kraus O,Castiel A,Laham N,Pupko T,Glaser F,Ben-Tal N,Bacharach E

    更新日期:2004-09-01 00:00:00

  • Origin and metabolic properties of the RNA species formed during the replication cycle of virus 2C.

    abstract::When short pulses of [(3)H]uracil were administered to Bacillus subtilis infected with phage 2C, the main species of labeled RNA was a 10S component that hybridized chiefly, but not exclusively, with the heavy strand of 2C DNA. After long pulses, most of the radioactivity was found in the 23S, 16S, and 5S rRNA's, whic...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.14.6.1482-1493.1974

    authors: Cocito C

    更新日期:1974-12-01 00:00:00

  • A single amino acid substitution in the murine norovirus capsid protein is sufficient for attenuation in vivo.

    abstract::Murine norovirus (MNV), a prevalent pathogen of laboratory mice, shares many characteristics with human noroviruses. Previous results indicated that passage of MNV1 in the macrophage cell line RAW 264.7 results in attenuation in STAT1-deficient mice (C. E. Wobus, S. M. Karst, L. B. Thackray, K. O. Chang, S. V. Sosnovt...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00237-08

    authors: Bailey D,Thackray LB,Goodfellow IG

    更新日期:2008-08-01 00:00:00

  • Mapping of the feline calicivirus proteinase responsible for autocatalytic processing of the nonstructural polyprotein and identification of a stable proteinase-polymerase precursor protein.

    abstract::Expression of the region of the feline calicivirus (FCV) ORF1 encoded by nucleotides 3233 to 4054 in an in vitro rabbit reticulocyte system resulted in synthesis of an active proteinase that specifically processes the viral nonstructural polyprotein. Site-directed mutagenesis of the cysteine (Cys1193) residue in the p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.8.6626-6633.1999

    authors: Sosnovtseva SA,Sosnovtsev SV,Green KY

    更新日期:1999-08-01 00:00:00

  • Interaction of the human papillomavirus type 16 E6 oncoprotein with wild-type and mutant human p53 proteins.

    abstract::The E6 oncoproteins encoded by the cancer-associated human papillomaviruses (HPVs) can associate with and promote the degradation of wild-type p53 in vitro. To gain further insight into this process, the ability of HPV-16 E6 to complex with and promote the degradation of mutant forms of p53 was studied. A correlation ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.8.5100-5105.1992

    authors: Scheffner M,Takahashi T,Huibregtse JM,Minna JD,Howley PM

    更新日期:1992-08-01 00:00:00