Control of the integral membrane proton pump, bacteriorhodopsin, by purple membrane lipids of Halobacterium halobium.

Abstract:

:Brief exposure of purple membrane (PM) to dilute Triton X-100 eliminates the actinic light effect on the relative amounts of fast M (Mf) and slow M (Ms) intermediates and alters the character and kinetics of the photocycle, without destroying the native BR trimers (Mukhopadhyay et al., 1994). Particular membrane lipids are removed during the Triton treatment, and adding back an extract of membrane lipids can repair most of the affected photocycle behavior (Dracheva et al., 1996). This paper defines conditions which are important in the reconstitution procedure, using a group of quantitative parameters which measure the extents of damage and repair. Circular dichroism in both the UV and visible ranges shows that Triton can disturb both the secondary structure of BR and its ability to polymerize into trimers. Whereas the damage to protein conformation could be reversed by lipids alone, the formation of trimers and recovery of normal photocycle behavior required both lipids and a high salt concentration.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Mukhopadhyay AK,Dracheva S,Bose S,Hendler RW

doi

10.1021/bi960738m

subject

Has Abstract

pub_date

1996-07-16 00:00:00

pages

9245-52

issue

28

eissn

0006-2960

issn

1520-4995

pii

bi960738m

journal_volume

35

pub_type

杂志文章
  • Solution conformation of asparagine-linked oligosaccharides: alpha(1-2)-, alpha(1-3)-, beta(1-2)-, and beta(1-4)-linked units.

    abstract::The solution conformation is presented for representatives of each of the major classes of asparaginyl oligosaccharides. In this report the conformation of alpha(1-3)-, alpha(1-2)-, beta(1-2)-, and beta(1-4)-linked units is described. The conformational properties of these glycopeptides were determined by high-resolut...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00284a021

    authors: Brisson JR,Carver JP

    更新日期:1983-07-19 00:00:00

  • Involvement of serine 96 in the catalytic mechanism of ferredoxin-NADP+ reductase: structure--function relationship as studied by site-directed mutagenesis and X-ray crystallography.

    abstract::The crystal structure of ferredoxin-NADP+ reductase (FNR) suggests that Ser96 is directly involved in hydride transfer between the isoalloxazine moiety of FAD and the nicotinamide ring of NADP(H). To probe its role, Ser96 has been mutated to valine (S96V) and glycine (S96G). These mutations primarily affected the inte...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00026a019

    authors: Aliverti A,Bruns CM,Pandini VE,Karplus PA,Vanoni MA,Curti B,Zanetti G

    更新日期:1995-07-04 00:00:00

  • Identification of the cyclosporin-binding site in P-glycoprotein.

    abstract::The binding site of cyclosporin A to P-glycoprotein was characterized by using a multidrug-resistant Chinese hamster ovary cell line. P-glycoprotein photolabeled with diazirine-cyclosporin A analogue was purified by a two-step process involving continuous elution electrophoresis followed by wheat germ agglutinin-agaro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981992c

    authors: Demeule M,Laplante A,Murphy GF,Wenger RM,Béliveau R

    更新日期:1998-12-22 00:00:00

  • Characterization of a heparin-binding site on the catalytic domain of factor XIa: mechanism of heparin acceleration of factor XIa inhibition by the serpins antithrombin and C1-inhibitor.

    abstract::Heparin accelerates inhibition of factor XIa (fXIa) by the serpins antithrombin (AT) and C1-inhibitor (C1-INH) by more than 2 orders of magnitude. The mechanism of the heparin-mediated acceleration of fXIa inhibition by these serpins is incompletely understood, as heparin appears to interact with both the catalytic an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802298r

    authors: Yang L,Sun MF,Gailani D,Rezaie AR

    更新日期:2009-02-24 00:00:00

  • Organization of the core lipids of lipoproteins from normal and cholesterol-fed rabbits. A proton nuclear magnetic resonance study.

    abstract::When rabbits are fed a diet supplemented with cholesterol, their plasma cholesterol levels increase markedly, and they develop atherosclerosis. Most of the plasma cholesterol exists as cholesteryl esters in very low density lipoproteins (VLDL) and intermediate-density lipoproteins (IDL). The triglyceride content of th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00268a025

    authors: Kroon PA,Seidenberg J

    更新日期:1982-12-07 00:00:00

  • Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

    abstract::15N-labeled hen lysozyme has been studied by 2D and 3D NMR in order to characterize its dynamic behavior. The resonances of all main-chain amide nitrogen atoms were assigned, as were resonances of nitrogen atoms in 28 side chains. Relaxation measurements for the main-chain and arginine and tryptophan side-chain 15N nu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00012a023

    authors: Buck M,Boyd J,Redfield C,MacKenzie DA,Jeenes DJ,Archer DB,Dobson CM

    更新日期:1995-03-28 00:00:00

  • Structural principles for the multispecificity of small GTP-binding proteins.

    abstract::The functional diversity of small GTP-binding proteins (G proteins) and their ability to function as molecular switches are based on their interactions with many different proteins. A wealth of structural data has revealed that their partners are often unrelated to each other in sequence and structure, but their bindi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049630u

    authors: Biou V,Cherfils J

    更新日期:2004-06-08 00:00:00

  • Significance of the nongenomic, inflammatory pathway in mediating the toxic action of TCDD to induce rapid and long-term cellular responses in 3T3-L1 adipocytes.

    abstract::TCDD (dioxin) induces a rapid inflammatory response from 3T3-L1 adipocytes as judged by prominent induction of the mRNA expression of prostaglandin-endperoxide synthase 2 (Cox-2) along with other inflammation markers within 1 h. This action of TCDD is clearly antagonized by cell pretreatment with AACOCF3 (an inhibitor...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801913w

    authors: Li W,Matsumura F

    更新日期:2008-12-30 00:00:00

  • Mutability of an HNH nuclease imidazole general base and exchange of a deprotonation mechanism.

    abstract::Several unique protein folds that catalyze the hydrolysis of phosphodiester bonds have arisen independently in nature, including the PD(D/E)XK superfamily (typified by type II restriction endonucleases and many recombination and repair enzymes) and the HNH superfamily (found in an equally wide array of enzymes, includ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700418d

    authors: Eastberg JH,Eklund J,Monnat R Jr,Stoddard BL

    更新日期:2007-06-19 00:00:00

  • Involvement of tryptophan residues at the coenzyme A binding site of carbon monoxide dehydrogenase from Clostridium thermoaceticum.

    abstract::Carbon monoxide dehydrogenase (CODH) from Clostridium thermoaceticum plays a central role in the newly discovered acetyl-CoA pathway [Wood, H.G., Ragsdale, S.W., & Pezacka, E. (1986) FEMS Microbiol. Rev. 39, 345-362]. The enzyme catalyzes the formation of acetyl-CoA from methyl, carbonyl, and CoA groups, and it has sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00417a045

    authors: Shanmugasundaram T,Kumar GK,Wood HG

    更新日期:1988-08-23 00:00:00

  • Investigations of photolysis and rebinding kinetics in myoglobin using proximal ligand replacements.

    abstract::We use laser flash photolysis and time-resolved Raman spectroscopy of CO-bound H93G myoglobin (Mb) mutants to study the influence of the proximal ligand on the CO rebinding kinetics. In H93G mutants, where the proximal linkage with the protein is eliminated and the heme can bind exogenous ligands (e.g., imidazole, 4-b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049077g

    authors: Cao W,Ye X,Sjodin T,Christian JF,Demidov AA,Berezhna S,Wang W,Barrick D,Sage JT,Champion PM

    更新日期:2004-08-31 00:00:00

  • A carbon-13 nuclear magnetic resonance study of hyperactive and hypoactive derivatives of luteinizing hormone-releasing hormone: des-Gly-NH210-[DLeu6]LH-RH ethylamide and des-Gly-NH210-[L-Leu6]LH-RH ethylamide.

    abstract::The carbon-13 (13C) nuclear magnetic resonance (NMR) behavior of the hyperactive analogue of luteinizing-hormone-releasing hormone (LH-RH), des-Gly-NH2(10)-[D-Leu6]LH-RH ethylamide, has been studied. The spectra are compared with those of the hypoactive des-Gly-NH2(10)-[L-Leu6]LH-RH ethylamide. Spin-lattice relaxation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00666a020

    authors: Deslauriers R,Komoroski RA,Levy GC,Seely JH,Smith IC

    更新日期:1976-10-19 00:00:00

  • Characterization of inward-rectifier K+ channel inhibition by antiarrhythmic piperazine.

    abstract::Strong inward-rectifier K(+) (Kir) channels play a significant role in shaping the cardiac action potential: they help produce its long plateau and accelerate its rate of repolarization. Consequently, genetic deletion of the gene encoding the strongly rectifying K(+) channel IRK1 (Kir2.1) prolongs the cardiac action p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0483099

    authors: Xu Y,Lu Z

    更新日期:2004-12-14 00:00:00

  • Identification of the catalytic residue of Thermococcus litoralis 4-alpha-glucanotransferase through mechanism-based labeling.

    abstract::Thermococcus litoralis 4-alpha-glucanotransferase (TLGT) belongs to family 57 of glycoside hydrolases and catalyzes the disproportionation and cycloamylose synthesis reactions. Family 57 glycoside hydrolases have not been well investigated, and even the catalytic mechanism involving the active site residues has not be...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011017c

    authors: Imamura H,Fushinobu S,Jeon BS,Wakagi T,Matsuzawa H

    更新日期:2001-10-16 00:00:00

  • The complete amino acid sequence of the major component myoglobin from the arctic minke whale, Balaenoptera acutorostrata.

    abstract::The complete primary structure of the major component myoglobin from the Arctic minke whale, Balaenoptera acutorostrata, was determined by specific cleavage of the protein to obtain large peptides which are readily degraded by the automatic sequencer. Over 80% of the amino acid sequence was established from the three ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00623a023

    authors: Lehman LD,Dwulet FE,Bogardt RA Jr,Jones BN,Gurd FR

    更新日期:1977-02-22 00:00:00

  • Comparison of the effects of tropomyosin and troponin-tropomyosin on the binding of myosin subfragment 1 to actin.

    abstract::The effect of tropomyosin alone on the binding of myosin subfragment 1 (S-1) to actin was compared to that of troponin-tropomyosin, with and without Ca2+. Over a range of ionic strength and with different ligands (adenyl-5'-yl imidodiphosphate, pyrophosphate, and adenosine 5'-diphosphate), tropomyosin confers slight c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00280a027

    authors: Williams DL Jr,Greene LE

    更新日期:1983-05-24 00:00:00

  • Identification of active-site residues of the pro-metastatic endoglycosidase heparanase.

    abstract::Heparanase is a beta-D-endoglucuronidase that cleaves heparan sulfate (HS) and has been implicated in many important physiological and pathological processes, including tumor cell metastasis, angiogenesis, and leukocyte migration. We report herein the identification of active-site residues of human heparanase. Using P...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002080p

    authors: Hulett MD,Hornby JR,Ohms SJ,Zuegg J,Freeman C,Gready JE,Parish CR

    更新日期:2000-12-26 00:00:00

  • eIF2B Mechanisms of Action and Regulation: A Thermodynamic View.

    abstract::Eukaryotic translation initiation factor 2B (eIF2B) is the guanine nucleotide exchange factor of the GTPase eIF2, which brings the initiator Met-tRNAi to the ribosome in the form of the eIF2-GTP·Met-tRNAi ternary complex (TC). The activity of eIF2B is inhibited by phosphorylation of its substrate eIF2 by several stres...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00957

    authors: Bogorad AM,Lin KY,Marintchev A

    更新日期:2018-03-06 00:00:00

  • Mechanisms of action of bactericidal/permeability-increasing protein BPI on reconstituted outer membranes of gram-negative bacteria.

    abstract::The mechanisms of interaction of the recombinant N-terminal portion of bactericidal/permeability-increasing protein, rBPI21, with various planar asymmetric and symmetric bilayer membranes, including the lipid matrix of the outer membrane of Gram-negative bacteria, were investigated via electrical measurements. For the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970177e

    authors: Wiese A,Brandenburg K,Carroll SF,Rietschel ET,Seydel U

    更新日期:1997-08-19 00:00:00

  • Metal-ion-dependent catalysis and specificity of CCA-adding enzymes: a comparison of two classes.

    abstract::The CCA-adding enzymes [ATP(CTP):tRNA nucleotidyl transferases] catalyze synthesis of the conserved and essential CCA sequence to the tRNA 3' end. These enzymes are divided into two classes of distinct structures that differ in the overall orientation of the head to tail domains. However, the catalytic core of the two...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0509402

    authors: Hou YM,Gu SQ,Zhou H,Ingerman L

    更新日期:2005-09-27 00:00:00

  • Rational design of new binding specificity by simultaneous mutagenesis of calmodulin and a target peptide.

    abstract::Calcium-saturated calmodulin (CaM) binds and influences the activity of a varied collection of target proteins in most cells. This promiscuity underlies the role of CaM as a shared participant in calcium-dependent signal transduction pathways but imposes a handicap on popular CaM-based calcium biosensors, which displa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060857u

    authors: Green DF,Dennis AT,Fam PS,Tidor B,Jasanoff A

    更新日期:2006-10-17 00:00:00

  • Conformational changes and subunit communication in tryptophan synthase: effect of substrates and substrate analogs.

    abstract::The transmission of regulatory signals between the alpha- and beta-subunits of the tryptophan synthase alpha 2 beta 2 complex from Salmonella typhimurium has been investigated by monitoring the luminescence properties of the enzyme in the presence and in the absence of the alpha-subunit ligand DL-alpha-glycerol 3-phos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00148a014

    authors: Strambini GB,Cioni P,Peracchi A,Mozzarelli A

    更新日期:1992-08-25 00:00:00

  • Rapid plasmenylethanolamine-selective fusion of membrane bilayers catalyzed by an isoform of glyceraldehyde-3-phosphate dehydrogenase: discrimination between glycolytic and fusogenic roles of individual isoforms.

    abstract::Recently we demonstrated that the unique stereoelectronic relationships inherent in the structure of plasmenylethanolamine facilitate membrane fusion, and we postulated the existence of a membrane fusion protein which could exploit the propensity of plasmenylethanolamine molecular species to adapt an inverted hexagona...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00038a013

    authors: Glaser PE,Gross RW

    更新日期:1995-09-26 00:00:00

  • Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR.

    abstract::The human double-stranded RNA- (dsRNA) activated protein kinase (PKR) has a dsRNA-binding domain (dsRBD) that contains two tandem copies of the dsRNA-binding motif (dsRBM). The minimal-length polypeptide required to bind dsRNA contains both dsRBMs, as determined by mobility-shift and filter-binding assays. Mobility-sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9607259

    authors: Bevilacqua PC,Cech TR

    更新日期:1996-08-06 00:00:00

  • CYP4 isozyme specificity and the relationship between omega-hydroxylation and terminal desaturation of valproic acid.

    abstract::The cytochrome P450-dependent terminal desaturation of valproic acid (VPA) is of both toxicological and mechanistic interest because the product, 4-ene-VPA, is a more potent hepatotoxin than the parent compound and its generation represents a rather novel metabolic reaction for the cytochrome P450 system. In the prese...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00024a013

    authors: Rettie AE,Sheffels PR,Korzekwa KR,Gonzalez FJ,Philpot RM,Baillie TA

    更新日期:1995-06-20 00:00:00

  • SNX-325, a novel calcium antagonist from the spider Segestria florentina.

    abstract::A novel selective calcium channel antagonist peptide, SNX-325, has been isolated from the venom of the spider Segestria florentina. The peptide was isolated using as bioassays the displacement of radioiodinated omega-conopeptide SNX-230 (MVIIC) from rat brain synaptosomal membranes, as well as the inhibition of the ba...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00026a015

    authors: Newcomb R,Palma A,Fox J,Gaur S,Lau K,Chung D,Cong R,Bell JR,Horne B,Nadasdi L

    更新日期:1995-07-04 00:00:00

  • Duplex oligodeoxyribonucleotides cross-linked by mitomycin C at a single site: synthesis, properties, and cross-link reversibility.

    abstract::Oligodeoxyribonucleotides cross-linked by reductively activated mitomycin C (MC) were prepared and purified for the first time. The cross-linked products were structurally characterized by nucleoside and MC-nucleoside adduct analysis. Optimal conditions were established for the cross-linking reaction, resulting in hig...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00464a015

    authors: Borowy-Borowski H,Lipman R,Chowdary D,Tomasz M

    更新日期:1990-03-27 00:00:00

  • Chromatin condensing functions of the linker histone C-terminal domain are mediated by specific amino acid composition and intrinsic protein disorder.

    abstract::Linker histones bind to the nucleosomes and linker DNA of chromatin fibers, causing changes in linker DNA structure and stabilization of higher order folded and oligomeric chromatin structures. Linker histones affect chromatin structure acting primarily through their approximately 100-residue C-terminal domain (CTD). ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801636y

    authors: Lu X,Hamkalo B,Parseghian MH,Hansen JC

    更新日期:2009-01-13 00:00:00

  • Strand orientation in the DNA quadruplex formed from the Oxytricha telomere repeat oligonucleotide d(G4T4G4) in solution.

    abstract::The structure formed from the DNA oligonucleotide d(G4T4G4) (Oxy-1.5), which contains the Oxytricha telomere repeat T4G4, has been investigated by two-dimensional 1H and 31P NMR spectroscopy. Sequence-specific assignments have been obtained for the 1H and 31P resonances, using a combination of methods including compar...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00084a040

    authors: Smith FW,Feigon J

    更新日期:1993-08-24 00:00:00

  • Functional interaction of the c-Myc transactivation domain with the TATA binding protein: evidence for an induced fit model of transactivation domain folding.

    abstract::c-Myc is a member of a family of sequence specific-DNA binding proteins that are thought to regulate the transcription of genes involved in normal cell growth, differentiation, and apoptosis. In order to understand how human c-myc functions as a transcription factor, we have studied the mechanism of action and structu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960793v

    authors: McEwan IJ,Dahlman-Wright K,Ford J,Wright AP

    更新日期:1996-07-23 00:00:00