Post-processing noise removal algorithm for magnetic resonance imaging based on edge detection and wavelet analysis.

Abstract:

:A post-processing noise suppression technique for biomedical MRI images is presented. The described procedure recovers both sharp edges and smooth surfaces from a given noisy MRI image; it does not blur the edges and does not introduce spikes or other artefacts. The fine details of the image are also preserved. The proposed algorithm first extracts the edges from the original image and then performs noise reduction by using a wavelet de-noise method. After the application of the wavelet method, the edges are restored to the filtered image. The result is the original image with less noise, fine detail and sharp edges. Edge extraction is performed by using an algorithm based on Sobel operators. The wavelet de-noise method is based on the calculation of the correlation factor between wavelet coefficients belonging to different scales. The algorithm was tested on several MRI images and, as an example of its application, we report the results obtained from a spin echo (multi echo) MRI image of a human wrist collected with a low field experimental scanner (the signal-to-noise ratio, SNR, of the experimental image was 12). Other filtering operations have been performed after the addition of white noise on both channels of the experimental image, before the magnitude calculation. The results at SNR = 7, SNR = 5 and SNR = 3 are also reported. For SNR values between 5 and 12, the improvement in SNR was substantial and the fine details were preserved, the edges were not blurred and no spikes or other artefacts were evident, demonstrating the good performances of our method. At very low SNR (SNR = 3) our result is worse than that obtained by a simpler filtering procedure.

journal_name

Phys Med Biol

authors

Placidi G,Alecci M,Sotgiu A

doi

10.1088/0031-9155/48/13/310

subject

Has Abstract

pub_date

2003-07-07 00:00:00

pages

1987-95

issue

13

eissn

0031-9155

issn

1361-6560

journal_volume

48

pub_type

杂志文章
  • A method for energy window optimization for quantitative tasks that includes the effects of model-mismatch on bias: application to Y-90 bremsstrahlung SPECT imaging.

    abstract::Quantitative Yttrium-90 ((90)Y) bremsstrahlung single photon emission computed tomography (SPECT) imaging has shown great potential to provide reliable estimates of (90)Y activity distribution for targeted radionuclide therapy dosimetry applications. One factor that potentially affects the reliability of the activity ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/57/12/3711

    authors: Rong X,Du Y,Frey EC

    更新日期:2012-06-21 00:00:00

  • Haemodynamic resistance model of monochorionic twin pregnancies complicated by acardiac twinning.

    abstract::An acardiac twin is a severely malformed monochorionic twin fetus that lacks most organs, particularly a heart. It grows during pregnancy, because it is perfused by its developmentally normal co-twin (called the pump twin) via a set of placental arterioarterial and venovenous anastomoses. The pump twin dies intrauteri...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/49/14/n01

    authors: Umur A,van Gemert MJ,van den Wijngaard JP,Ross MG,Nikkels PG

    更新日期:2004-07-21 00:00:00

  • High spatial resolution quantitative MR images: an experimental study of dedicated surface coils.

    abstract::Measuring spin-spin relaxation times (T2) by quantitative MR imaging represents a potentially efficient tool to evaluate the physicochemical properties of various media. However, noise in MR images is responsible for uncertainties in the determination of T2 relaxation times, which limits the accuracy of parametric tis...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/51/11/011

    authors: Gensanne D,Josse G,Lagarde JM,Vincensini D

    更新日期:2006-06-07 00:00:00

  • Locally linear constraint based optimization model for material decomposition.

    abstract::Dual spectral computed tomography (DSCT) has a superior material distinguishability than the conventional single spectral computed tomography (SSCT). However, the decomposition process is an illposed problem, which is sensitive to noise. Thus, the decomposed image quality is degraded, and the corresponding signal-to-n...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aa8e13

    authors: Wang Q,Zhu Y,Yu H

    更新日期:2017-10-19 00:00:00

  • The local noise property in positron volume imaging and optimal conditions for the signal-to-noise ratio of the 3D reconstructed image.

    abstract::The local noise property of a 3D PET reconstructed image is investigated for a uniform-activity sphere distributed in a constantly attenuating spherical object. The positional dependence of the statistical noise is approximately derived and calculated for some special cases. It is suggested that a larger diameter of t...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/42/1/015

    authors: Murayama H,Nohara N

    更新日期:1997-01-01 00:00:00

  • Evaluation of nonuniform field exposures with coupling factors.

    abstract::In this study, the safety compliance for nonuniform field exposures is discussed using coupling factor concepts. The coupling factor, which is defined in the International Electrotechnical Commission 62311 standard, is extended to consider the effects of harmonics and also to apply to the specific absorption rate (for...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/60/20/8129

    authors: Sunohara T,Hirata A,Laakso I,De Santis V,Onishi T

    更新日期:2015-10-21 00:00:00

  • Robust radiation therapy optimization using simulated treatment courses for handling deformable organ motion.

    abstract::We describe a radiation therapy treatment plan optimization method that explicitly considers the effects of interfraction organ motion through optimization on the clinical target volume (CTV), and investigate how it compares to conventional planning using a planning target volume (PTV). The method uses simulated treat...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/abd591

    authors: Fredriksson A,Engwall E,Andersson B

    更新日期:2020-12-21 00:00:00

  • Development of a fast Monte Carlo dose calculation system for online adaptive radiation therapy quality assurance.

    abstract::Online adaptive radiation therapy (ART) based on real-time magnetic resonance imaging represents a paradigm-changing treatment scheme. However, conventional quality assurance (QA) methods based on phantom measurements are not feasible with the patient on the treatment couch. The purpose of this work is to develop a fa...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aa6e38

    authors: Wang Y,Mazur TR,Park JC,Yang D,Mutic S,Li HH

    更新日期:2017-06-21 00:00:00

  • The modelling of biological systems in three dimensions using the time domain finite-difference method: I. The implementation of the model.

    abstract::A computer method has been developed which uses the time domain finite-difference (TDFD) algorithm to calculate the deposition of the electromagnetic (EM) field in three-dimensional biological models. This, the first of two papers, describes the algorithm and the computer programs developed. The method is demonstrated...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/31/11/006

    authors: Lau RW,Sheppard RJ

    更新日期:1986-11-01 00:00:00

  • Infrared and visible thermoluminescence signals of Tm-doped CaF2 measured by a semiconductor photodiode.

    abstract::A silicon semiconductor photodiode was used to measure the TL-signal of TLD-300 (CaF2:Tm) detectors irradiated with 60Co gamma rays and 226Ra alpha particles. The applied dose values varied from 0.12 to 14.3 Gy for gamma rays and from about 50 to 300 Gy for alpha particles. Because of the infrared sensitivity of the p...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/33/12/006

    authors: Meissner P,Jacob M,Rassow J

    更新日期:1988-12-01 00:00:00

  • Calculation of positron range and its effect on the fundamental limit of positron emission tomography system spatial resolution.

    abstract::Developments in positron emission tomography (PET) technology have resulted in systems with finer detector elements designed to further improve spatial resolution. However, there is a limit to what extent reducing detector element size will improve spatial resolution in PET. The spatial resolution of PET imaging is li...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/44/3/019

    authors: Levin CS,Hoffman EJ

    更新日期:1999-03-01 00:00:00

  • Positron autoradiography for intravascular imaging: feasibility evaluation.

    abstract::Approximately 70% of acute coronary artery disease is caused by unstable (vulnerable) plaques with an inflammation of the overlying cap and high lipid content. A rupturing of the inflamed cap of the plaque results in propagation of the thrombus into the lumen, blockage of the artery and acute ischaemic syndrome or sud...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/51/4/014

    authors: Shikhaliev PM,Xu T,Ducote JL,Easwaramoorthy B,Mukherjee J,Molloi S

    更新日期:2006-02-21 00:00:00

  • The design of anisotropic diffusion phantoms for the validation of diffusion weighted magnetic resonance imaging.

    abstract::Diffusion weighted magnetic resonance imaging offers a non-invasive tool to explore the three-dimensional structure of brain white matter in clinical practice. Anisotropic diffusion hardware phantoms are useful for the quantitative validation of this technique. This study provides guidelines on how to manufacture anis...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/53/19/009

    authors: Fieremans E,De Deene Y,Delputte S,Ozdemir MS,Achten E,Lemahieu I

    更新日期:2008-10-07 00:00:00

  • Physics of contrast mechanism and averaging effect of linear attenuation coefficients in a computerized transverse axial tomography CTAT) transmission scanner.

    abstract::Detailed studies of the basic contrast mechanisms in computerized transverse axial tomography scanners have been carried out. Contrast is related to the effective atomic numbers and electron densities of materials and the resultant linear attenuation coefficients. We have therefore quantitatively evaluated various sam...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/21/4/006

    authors: Tsai CM,Cho ZH

    更新日期:1976-07-01 00:00:00

  • Fundamental study on diffuse reflective optical tomography.

    abstract::We report a simulation study on diffuse reflective optical computed tomography, in which continuous-wave sources and detectors are placed on the plane surface of a semi-infinite body. We adopted a simple Tikhonov regularization in the inverse problem and demonstrated the feasibility of three-dimensional reconstruction...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/49/10/004

    authors: Endoh R,Suzuki A,Fujii M,Nakayama K

    更新日期:2004-05-21 00:00:00

  • Organ and effective doses in newborn patients during helical multislice computed tomography examination.

    abstract::In this study, two computational phantoms of the newborn patient were used to assess individual organ doses and effective doses delivered during head, chest, abdomen, pelvis, and torso examinations using the Siemens SOMATOM Sensation 16 helical multi-slice computed tomography (MSCT) scanner. The stylized phantom used ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/51/20/005

    authors: Staton RJ,Lee C,Lee C,Williams MD,Hintenlang DE,Arreola MM,Williams JL,Bolch WE

    更新日期:2006-10-21 00:00:00

  • Dose error analysis for a scanned proton beam delivery system.

    abstract::All particle beam scanning systems are subject to dose delivery errors due to errors in position, energy and intensity of the delivered beam. In addition, finite scan speeds, beam spill non-uniformities, and delays in detector, detector electronics and magnet responses will all contribute errors in delivery. In this p...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/55/23/S09

    authors: Coutrakon G,Wang N,Miller DW,Yang Y

    更新日期:2010-12-07 00:00:00

  • Simultaneous Tc-99m/I-123 dual-radionuclide myocardial perfusion/innervation imaging using Siemens IQ-SPECT with SMARTZOOM collimator.

    abstract::Simultaneous dual-radionuclide myocardial perfusion/innervation SPECT imaging can provide important information about the mismatch between scar tissue and denervated regions. The Siemens IQ-SPECT system developed for cardiac imaging uses a multifocal SMARTZOOM collimator to achieve a four-fold sensitivity for the card...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/59/11/2813

    authors: Du Y,Bhattacharya M,Frey EC

    更新日期:2014-06-07 00:00:00

  • Radiofrequency heating effects around resonant lengths of wire in MRI.

    abstract::Several recent reports agree that the potentially dangerous heating around extended wires or coaxial cables inside the bodycoil of a magnetic resonance imager is related to resonant effects. No quantitative description of this idea has been given so far. We analyse a simplified situation, where a straight metallic wir...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/47/16/312

    authors: Pictet J,Meuli R,Wicky S,van der Klink JJ

    更新日期:2002-08-21 00:00:00

  • Effects of injected dose, BMI and scanner type on NECR and image noise in PET imaging.

    abstract::Noise equivalent count rate (NECR) and image noise are two different but related metrics that have been used to predict and assess image quality, respectively. The aim of this study is to investigate, using patient studies, the relationships between injected dose (ID), body mass index (BMI) and scanner type on NECR an...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/56/16/013

    authors: Chang T,Chang G,Kohlmyer S,Clark JW,Rohren E,Mawlawi OR

    更新日期:2011-08-21 00:00:00

  • An FDK-like cone-beam SPECT reconstruction algorithm for non-uniform attenuated projections acquired using a circular trajectory.

    abstract::In this paper, Novikov's inversion formula of the attenuated two-dimensional (2D) Radon transform is applied to the reconstruction of attenuated fan-beam projections acquired with equal detector spacing and of attenuated cone-beam projections acquired with a flat planar detector and circular trajectory. The derivation...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/50/10/010

    authors: Huang Q,Zeng GL,You J,Gullberg GT

    更新日期:2005-05-21 00:00:00

  • The use of customized spreadsheets in radiation therapy.

    abstract::A number of radiation-therapy-related uses based on a commercially available spreadsheet program have been developed at our facility. The graphics and display capabilities inherent in these spreadsheet programs allow for concise visual results. The spreadsheets are used as an independent check for several types of rad...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/40/6/007

    authors: Balog JP,Sibata CH,Podgorsak MB,Shin KH

    更新日期:1995-06-01 00:00:00

  • Real-time monitoring of focused ultrasound blood-brain barrier opening via subharmonic acoustic emission detection: implementation of confocal dual-frequency piezoelectric transducers.

    abstract::Burst-tone focused ultrasound exposure in the presence of microbubbles has been demonstrated to be effective at inducing temporal and local opening of the blood-brain barrier (BBB), which promises significant clinical potential to deliver therapeutic molecules into the central nervous system (CNS). Traditional contras...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/61/7/2926

    authors: Tsai CH,Zhang JW,Liao YY,Liu HL

    更新日期:2016-04-07 00:00:00

  • A comparison of 60 Hz uniform magnetic and electric induction in the human body.

    abstract::High-resolution computations of induced fields are used to assess equivalent source levels for human exposure to uniform low-frequency electric and magnetic fields. These results pertain to 60 Hz foot-to-head electric excitation of the body in three positions with respect to a ground plane, and to magnetic excitation ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/42/12/001

    authors: Dawson TW,Caputa K,Stuchly MA

    更新日期:1997-12-01 00:00:00

  • The use of narrowband ultrasound for characterization of tissue in a thin layer.

    abstract::Most tissue characterization methods use RF data originating from backscattering processes in the insonified tissue. Characterization of the tissue of a thin layer (e.g., an artery wall) poses problems because of the small amount of data available. The tissue layer may be so thin that there are no RF data that are not...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/36/10/002

    authors: Linssen FM,Hoeks AP,Brands PJ

    更新日期:1991-10-01 00:00:00

  • Spectral x-ray imaging: Conditions under which propagation-based phase-contrast is beneficial.

    abstract::Energy-resolved attenuation data in spectral x-ray imaging enables material decomposition, in which the different materials inside an object can be identified and separated virtually. Material decomposition has the drawback of increased noise in the resulting material images relative to the measured images. Recently, ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aba318

    authors: Schaff F,Morgan KS,Paganin DM,Kitchen MJ

    更新日期:2020-10-07 00:00:00

  • Geometrical structures for radiation biology research as implemented in the TOPAS-nBio toolkit.

    abstract::Computational simulations, such as Monte Carlo track structure simulations, offer a powerful tool for quantitatively investigating radiation interactions within cells. The modelling of the spatial distribution of energy deposition events as well as diffusion of chemical free radical species, within realistic biologica...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aad8eb

    authors: McNamara AL,Ramos-Méndez J,Perl J,Held K,Dominguez N,Moreno E,Henthorn NT,Kirkby KJ,Meylan S,Villagrasa C,Incerti S,Faddegon B,Paganetti H,Schuemann J

    更新日期:2018-09-06 00:00:00

  • An absorptiometry method for the determination of arterial blood concentration of injected iodinated contrast agent.

    abstract::A single photon absorptiometry method to measure the arterial concentration of injected iodinated contrast agent was developed. A prototype absorptiometry unit was built which consists of either a square or circular cross section acrylic (polymethylmethacrylate) cuvette connected to an arterial catheter at one end and...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/37/9/002

    authors: Yeung WT,Lee TY,Del Maestro RF,Kozak R,Bennett JD,Brown T

    更新日期:1992-09-01 00:00:00

  • The calibration of CT Hounsfield units for radiotherapy treatment planning.

    abstract::Computer tomographic (CT) scans are used to correct for tissue inhomogeneities in radiotherapy treatment planning. In order to guarantee a precise treatment, it is important to obtain the relationship between CT Hounsfield units and electron densities (or proton stopping powers for proton radiotherapy), which is the b...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/41/1/009

    authors: Schneider U,Pedroni E,Lomax A

    更新日期:1996-01-01 00:00:00

  • Directional x-ray dark-field imaging.

    abstract::We introduce a novel x-ray imaging approach that yields information about the local texture of structures smaller than the image pixel resolution inside an object. The approach is based on a recently developed x-ray dark-field imaging technique, using scattering from sub-micron structures in the sample. We show that t...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/55/12/004

    authors: Jensen TH,Bech M,Bunk O,Donath T,David C,Feidenhans'l R,Pfeiffer F

    更新日期:2010-06-21 00:00:00