Delta-sleep-inducing peptide: solution conformational studies of a membrane-permeable peptide.

Abstract:

:Peptides and peptide-like molecules as a class have very poor permeability through biological membranes, which severely compromises their potential effectiveness as therapeutic agents. In order to gain insight into the problem of delivering peptide and protein drugs and to establish a model in which the effects of systematic structural variations on transport can be explored, an investigation of the solution conformation of a membrane-permeable peptide was undertaken. Delta-sleep-inducing peptide (DSIP, MW 849) was used in this investigation. DSIP is a charged, hydrophilic peptide that possesses the unusual ability to diffuse passively across the blood-brain barrier (BBB) in vivo [Kastin, A. J., Banks, W. A., Castellanos, P. F., Nissen, C., & Coy, D. H. (1982) Pharmacol. Biochem. Behav. 17, 1187-1191] and across monolayers of brain microvessel endothelial cells in vitro, a model of the BBB [Raeissi, S., & Audus, K. L. (1989) J. Pharm. Pharmacol. 41, 848-852]. This nonapeptide was studied in solution using one- and two-dimensional nuclear magnetic resonance (NMR), circular dichroism (CD), Fourier transform infrared (FT-IR), and fluorescence spectroscopies in conjunction with molecular modeling. Our spectroscopic findings suggest that DSIP exists in a dynamic equilibrium between unordered and folded structures. Residues 2-5 and 6-9 tend to form type I beta-turns in aqueous solution and a similar, but more ordered, helix-like structure inducible in 40% trifluoroethanol (TFE). NMR, FT-IR, and CD studies in aqueous solution support the dynamic equilibrium hypothesis with the IR data, suggesting that the beta-turn population is approximately 40%.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Gray RA,Vander Velde DG,Burke CJ,Manning MC,Middaugh CR,Borchardt RT

doi

10.1021/bi00172a006

subject

Has Abstract

pub_date

1994-02-15 00:00:00

pages

1323-31

issue

6

eissn

0006-2960

issn

1520-4995

journal_volume

33

pub_type

杂志文章
  • Solution structure of the first Sam domain of Odin and binding studies with the EphA2 receptor.

    abstract::The EphA2 receptor plays key roles in many physiological and pathological events, including cancer. The process of receptor endocytosis and the consequent degradation have attracted attention as possible means of overcoming the negative outcomes of EphA2 in cancer cells and decreasing tumor malignancy. A recent study ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300141h

    authors: Mercurio FA,Marasco D,Pirone L,Pedone EM,Pellecchia M,Leone M

    更新日期:2012-03-13 00:00:00

  • Modification of Escherichia coli ribosomes with the fluorescent reagent N-[[(iodoacetyl)amino]ethyl]-5-naphthylamine-1-sulfonic acid. Identification of derivatized L31' and studies on its intraribosomal properties.

    abstract::N-[[(Iodoacetyl)amino]ethyl]-5-naphthylamine-1-sulfonic acid (IAEDANS) is a fluorescent reagent which reacts covalently with the free thiol groups of proteins. When the reagent is reacted with the Escherichia coli ribosome under mild conditions, gel electrophoresis shows modification of predominantly two proteins, S18...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00346a042

    authors: Hanas JS,Simpson MV

    更新日期:1985-12-03 00:00:00

  • Labeling of two different regions of the nucleotide binding site of the uncoupling protein from brown adipose tissue mitochondria with two ATP analogs.

    abstract::The nucleotide binding site of the uncoupling protein (UCP) from brown adipose tissue was mapped by photoaffinity labeling with 2-azidoadenosine 5'-triphosphate (2-azido-ATP) and by affinity labeling with 3'-O-(5-fluoro-2,4-dinitrophenyl)adenosine 5'-triphosphate (FDNP-ATP). Both analogs bind with high affinity and sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00158a017

    authors: Mayinger P,Klingenberg M

    更新日期:1992-11-03 00:00:00

  • Quantum Mechanics/Molecular Mechanics Simulations Identify the Ring-Opening Mechanism of Creatininase.

    abstract::Creatininase catalyzes the conversion of creatinine (a biosensor for kidney function) to creatine via a two-step mechanism: water addition followed by ring opening. Water addition is common to other known cyclic amidohydrolases, but the precise mechanism for ring opening is still under debate. The proton donor in this...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01032

    authors: Jitonnom J,Mujika JI,van der Kamp MW,Mulholland AJ

    更新日期:2017-12-05 00:00:00

  • Linkage between operator binding and dimer to octamer self-assembly of bacteriophage lambda cI repressor.

    abstract::Cooperative binding of the bacteriophage lambda cI repressor dimer to specific sites of the phage operators OR and OL controls the developmental state of the phage. Cooperativity has long been thought to be mediated by self-assembly of repressor dimers to form tetramers which can bind simultaneously to adjacent operat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971368k

    authors: Rusinova E,Ross JB,Laue TM,Sowers LC,Senear DF

    更新日期:1997-10-21 00:00:00

  • Rearrangement of domain elements of the Ca-ATPase in cardiac sarcoplasmic reticulum membranes upon phospholamban phosphorylation.

    abstract::Phospholamban (PLB) is a major target of the beta-adrenergic cascade in the heart, and functions to modulate rate-limiting conformational transitions involving the transport activity of the Ca-ATPase. To investigate structural changes within the Ca-ATPase that result from the phosphorylation of PLB by cAMP-dependent p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990599j

    authors: Negash S,Huang S,Squier TC

    更新日期:1999-06-22 00:00:00

  • Channeling in sulfate activating complexes.

    abstract::The synthesis of activated sulfate (adenosine 5'-phosphosulfate, APS) and inorganic pyrophosphate from ATP and SO4 is remarkably unfavorable: K(eq) approximately 10(-8) under presumed, near-physiological conditions. Consequently, ATP sulfurylases, which catalyze APS synthesis, suffer approximately 10(8)-fold losses in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060421e

    authors: Sun M,Leyh TS

    更新日期:2006-09-26 00:00:00

  • Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily.

    abstract::Pseudomonas aeruginosa PA4872 was identified by sequence analysis as a structurally and functionally novel member of the PEP mutase/isocitrate lyase superfamily and therefore targeted for investigation. Substrate screens ruled out overlap with known catalytic functions of superfamily members. The crystal structure of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701954p

    authors: Narayanan BC,Niu W,Han Y,Zou J,Mariano PS,Dunaway-Mariano D,Herzberg O

    更新日期:2008-01-08 00:00:00

  • Independent heterologous fibrillation of insulin and its B-chain peptide.

    abstract::Insulin is very prone to form amyloid fibrils under slightly destabilizing conditions, and the B-chain region plays a critical role in the fibrillation. We show here that the isolated B-chain peptide of bovine insulin also forms fibrils at both acidic and neutral pH. When a mixture of insulin and the B-chain peptide w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051658y

    authors: Hong DP,Fink AL

    更新日期:2005-12-20 00:00:00

  • Characterization of the internal motions of Escherichia coli ribonuclease HI by a combination of 15N-NMR relaxation analysis and molecular dynamics simulation: examination of dynamic models.

    abstract::The backbone dynamics of Escherichia coli ribonuclease HI (RNase HI) in the picosecond to nanosecond time scale were characterized by a combination of measurements of 15N-NMR relaxation (T1, T2, and NOE), analyzed by a model-free approach, and molecular dynamics (MD) simulation in water. The MD simulations in water we...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00020a003

    authors: Yamasaki K,Saito M,Oobatake M,Kanaya S

    更新日期:1995-05-23 00:00:00

  • Transmembrane topology of mammalian planar cell polarity protein Vangl1.

    abstract::Vangl1 and Vangl2 are membrane proteins that play an important role in neurogenesis, and Vangl1/Vangl2 mutations cause neural tube defects in mice and humans. At the cellular level, Vangl proteins regulate the establishment of planar cell polarity (PCP), a process requiring membrane assembly of asymmetrically distribu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101767a

    authors: Iliescu A,Gravel M,Horth C,Apuzzo S,Gros P

    更新日期:2011-03-29 00:00:00

  • Function of the MexB efflux-transporter divided into two halves.

    abstract::The MexA-MexB-OprM efflux pump exports structurally and functionally diverse xenobiotics and confers multi-drug resistance on Pseudomonas aeruginosa cells. The MexB transporter traverses the inner membrane twelve times, bears two large periplasmic domains and has two homologous tandem repeats. To test whether two homo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0300074

    authors: Eda S,Yoneyama H,Nakae T

    更新日期:2003-06-17 00:00:00

  • Design of specific peptide inhibitors for group I phospholipase A2: structure of a complex formed between phospholipase A2 from Naja naja sagittifera (group I) and a designed peptide inhibitor Val-Ala-Phe-Arg-Ser (VAFRS) at 1.9 A resolution reveals unique

    abstract::Phospholipase A(2) (PLA(2)) (E. C. 3.1.1.4) is a common enzyme in the two-way cascade mechanism leading to the production of proinflammatory compounds known as eicosanoids. The binding of phospholipase A(2) to the membrane surface and hydrolysis of phospholipids are thought to involve the formation of a hydrophobic ch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035076x

    authors: Singh RK,Vikram P,Makker J,Jabeen T,Sharma S,Dey S,Kaur P,Srinivasan A,Singh TP

    更新日期:2003-10-14 00:00:00

  • DNA topoisomerase I-mediated formation of structurally modified DNA duplexes. Effects of metal ions and topoisomerase I inhibitors.

    abstract::The ability of DNA topoisomerase I to mediate the formation of structurally modified DNA duplexes was studied utilizing suicide substrates containing high-efficiency cleavage sites and acceptor oligonucleotides in which the 5'-terminal nucleotides were varied. When the substrates were nicked duplexes, the divalent cat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972707c

    authors: Wang X,Henningfeld KA,Hecht SM

    更新日期:1998-02-24 00:00:00

  • Hydron transfer catalyzed by triosephosphate isomerase. Products of the direct and phosphite-activated isomerization of [1-(13)C]-glycolaldehyde in D(2)O.

    abstract::Product distributions for the reaction of glycolaldehyde labeled with carbon-13 at the carbonyl carbon ([1-(13)C]-GA) catalyzed by triosephosphate isomerase (TIM) in D(2)O at pD 7.0 in the presence of phosphite dianion and in its absence were determined by (1)H NMR spectroscopy. We observe three products for the relat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900636c

    authors: Go MK,Amyes TL,Richard JP

    更新日期:2009-06-23 00:00:00

  • Spectroscopic and functional characterization of T state hemoglobin conformations encapsulated in silica gels.

    abstract::Oxygen binding curves of sol-gel-encapsulated deoxy human adult hemoglobin (HbA) have previously revealed two distinct noncooperative populations with oxygen binding affinities approximately 1000 and 100 times lower than that of the high-affinity R state. The two populations which have been termed the low-affinity (LA...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048531d

    authors: Samuni U,Dantsker D,Juszczak LJ,Bettati S,Ronda L,Mozzarelli A,Friedman JM

    更新日期:2004-11-02 00:00:00

  • Reevaluation of the stoichiometry of cytochrome b559 in photosystem II and thylakoid membranes.

    abstract::The stoichiometry of cytochrome b559 (one or two copies) per reaction center of photosystem II (PSII) has been the subject of considerable debate. The molar ratio of cytochrome b559 has a number of significant implications on our understanding of the functional role of cytochrome b559, the mechanism of electron donati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00161a024

    authors: Buser CA,Diner BA,Brudvig GW

    更新日期:1992-11-24 00:00:00

  • The two Caenorhabditis elegans actin-depolymerizing factor/cofilin proteins differently enhance actin filament severing and depolymerization.

    abstract::Actin-depolymerizing factor (ADF)/cofilin enhances the turnover of actin filaments by two separable activities: filament severing and pointed-end depolymerization. Multicellular organisms express multiple ADF/cofilin isoforms in a tissue-specific manner, and the vertebrate proteins are grouped into ADFs and cofilins o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050933d

    authors: Yamashiro S,Mohri K,Ono S

    更新日期:2005-11-01 00:00:00

  • The roles of active-site residues in the catalytic mechanism of trans-3-chloroacrylic acid dehalogenase: a kinetic, NMR, and mutational analysis.

    abstract::trans-3-Chloroacrylic acid dehalogenase (CaaD) converts trans-3-chloroacrylic acid to malonate semialdehyde by the addition of H(2)O to the C-2, C-3 double bond, followed by the loss of HCl from the C-3 position. Sequence similarity between CaaD, an (alphabeta)(3) heterohexamer (molecular weight 47,547), and 4-oxalocr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi030241u

    authors: Azurmendi HF,Wang SC,Massiah MA,Poelarends GJ,Whitman CP,Mildvan AS

    更新日期:2004-04-13 00:00:00

  • Conformational properties of nine purified cystathionine β-synthase mutants.

    abstract::Protein misfolding due to missense mutations is a common pathogenic mechanism in cystathionine β-synthase (CBS) deficiency. In our previous studies, we successfully expressed, purified, and characterized nine CBS mutant enzymes containing the following patient mutations: P49L, P78R, A114V, R125Q, E176K, R266K, P422L, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300435e

    authors: Hnízda A,Majtan T,Liu L,Pey AL,Carpenter JF,Kodíček M,Kožich V,Kraus JP

    更新日期:2012-06-12 00:00:00

  • Ultrafast water dynamics at the interface of the polymerase-DNA binding complex.

    abstract::DNA polymerases slide on DNA during replication, and the interface must be mobile for various conformational changes. The role of lubricant interfacial water is not understood. In this report, we systematically characterize the water dynamics at the interface and in the active site of a tight binding polymerase (pol β...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500810a

    authors: Yang Y,Qin Y,Ding Q,Bakhtina M,Wang L,Tsai MD,Zhong D

    更新日期:2014-08-26 00:00:00

  • Site-directed mutagenesis identifies catalytic residues in the active site of Escherichia coli phosphofructokinase.

    abstract::Six active site mutants of Escherichia coli phosphofructokinase have been constructed and characterized using steady-state kinetics. All but one of the mutants (ES222) have significantly lower maximal activity, implicating these residues in the catalytic process. Replacement of Asp127, the key catalytic residue in the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00153a017

    authors: Berger SA,Evans PR

    更新日期:1992-09-29 00:00:00

  • Allosteric communication in the tryptophan synthase bienzyme complex: roles of the beta-subunit aspartate 305-arginine 141 salt bridge.

    abstract::The allosteric interactions that regulate substrate channeling and catalysis in the tryptophan synthase bienzyme complex from Salmonella typhimurium are triggered by covalent reactions at the beta-site and binding of substrate/product to the alpha-site. The transmission of these allosteric signals between the alpha- a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034291a

    authors: Ferrari D,Niks D,Yang LH,Miles EW,Dunn MF

    更新日期:2003-07-01 00:00:00

  • Isolation of brain endopeptidases: influence of size and sequence of substrates structurally related to bradykinin.

    abstract::Two thiol-activated endopeptidases with pH optima near pH 7.5 were isolated from the supernatant fraction of rabbit brain homogenates by DEAE-cellulose chromatography, gel filtration and isoelectrofocusing. Peptide bond hydrolysis was measured quantitatively by ion-exchange chromatography with an amino acid analyzer. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00654a026

    authors: Oliveira EB,Martins AR,Camargo AC

    更新日期:1976-05-04 00:00:00

  • The formylglycinamide ribonucleotide amidotransferase complex from Bacillus subtilis: metabolite-mediated complex formation.

    abstract::Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP- and glutamine-dependent formation of formylglycinamidine ribonucleotide, ADP, P(i), and glutamate in the fourth step of de novo purine biosynthesis. Like all amidotransferases (ATs), FGAR-AT is proposed to channel ammonia between a glutamin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049127h

    authors: Hoskins AA,Anand R,Ealick SE,Stubbe J

    更新日期:2004-08-17 00:00:00

  • Kringle 4 from human plasminogen: a proton magnetic resonance study via two-dimensional photochemically induced dynamic nuclear polarization spectroscopy.

    abstract::Two-dimensional (2D) proton magnetic resonance techniques used in conjunction with laser photochemically induced dynamic nuclear polarization (photo-CIDNP) spectroscopy have been applied to studying the kringle 4 domain from human plasminogen at 360 MHz. Out of 11 potential CIDNP-sensitive aromatic side chains, only 5...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00372a020

    authors: De Marco A,Zetta L,Petros AM,Llinás M,Boelens R,Kaptein R

    更新日期:1986-12-02 00:00:00

  • Amino acid structures of multiple forms of amyloid-related serum protein SAA from a single individual.

    abstract::Multiple forms of the acute-phase serum protein SAA were isolated from the lipoprotein fraction of plasma from a single individual. These protein forms were purified by size-exclusion, ion-exchange, and reverse-phase high-pressure liquid chromatography, and then the tryptic peptides were subjected to amino acid sequen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00405a044

    authors: Dwulet FE,Wallace DK,Benson MD

    更新日期:1988-03-08 00:00:00

  • Effects of temperature and viscosity on R67 dihydrofolate reductase catalysis.

    abstract::R67 dihydrofolate reductase (DHFR) is a novel homotetrameric protein that possesses 222 symmetry and a single, voluminous active site pore. This symmetry poses numerous limitations on catalysis; for example, two dihydrofolate (DHF) molecules or two NADPH molecules, or one substrate plus one cofactor can bind. Only the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052504l

    authors: Chopra S,Lynch R,Kim SH,Jackson M,Howell EE

    更新日期:2006-05-30 00:00:00

  • Structural investigation of the binding of nucleotide to phosphoenolpyruvate carboxykinase by NMR.

    abstract::The enzyme phosphoenolpyruvate carboxykinase (PEPCK) catalyzes the reversible conversion of oxalacetate and GTP to phosphoenolpyruvate (PEP), GDP, and CO2. PEPCK from higher organisms is a monomer, specifically requires GTP or ITP, and uses Mn2+ as the activating cation. Currently, there is no crystal structure of GTP...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011374n

    authors: Holyoak T,Nowak T

    更新日期:2001-09-18 00:00:00

  • Nuclear Magnetic Resonance Structural Mapping Reveals Promiscuous Interactions between Clathrin-Box Motif Sequences and the N-Terminal Domain of the Clathrin Heavy Chain.

    abstract::The recruitment and organization of clathrin at endocytic sites first to form coated pits and then clathrin-coated vesicles depend on interactions between the clathrin N-terminal domain (TD) and multiple clathrin binding sequences on the cargo adaptor and accessory proteins that are concentrated at such sites. Up to f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00065

    authors: Zhuo Y,Cano KE,Wang L,Ilangovan U,Hinck AP,Sousa R,Lafer EM

    更新日期:2015-04-28 00:00:00