CXCR4 and CCR5 regulation and expression patterns on T- and monocyte-macrophage cell lineages: implications for susceptibility to infection by HIV-1.

Abstract:

:Chemokine receptor expression may vary dramatically among cell subsets. Therefore, the stage of differentiation and the lineage of CD4 cells may profoundly affect their susceptibility to infection by human immunodeficiency virus type 1 (HIV-1). However, the mechanisms of coreceptor competition for association with HIV-1 glycoproteins remain unknown. Here, we propose mathematical models that address the interdependence of the concentrations of CD4 and CCR5 for efficient infection by M-tropic HIV-1 as well as additional complications originated by coreceptor competition caused by posttranslational modifications that positively or negatively affect the coreceptor ability to form complexes with CD4 and/or HIV-1 envelope. Furthermore, since CCR5 and CXCR4 expression on human leukocytes designate these cells as HIV-1 potential targets, the expression of the major HIV-1 coreceptors are also dynamically modeled/quantified as function of the stage of cell differentiation. Results show that although coreceptor competition degree has limited influence on R5 strain infectivity, the infectivity of CXCR4-using isolates strongly depends on the CD4 expression, according to the coreceptor competition model proposed in Lee et al. [J. Virol. 74(11) (2000) 5016]. Understanding the role of in vivo alterations in CD4, CCR5 and CXCR4 densities on HIV-1 cell entry may help the development of optimal control strategies for AIDS pathogenesis.

journal_name

Math Biosci

journal_title

Mathematical biosciences

authors

Joly M,Pinto JM

doi

10.1016/j.mbs.2005.01.002

subject

Has Abstract

pub_date

2005-05-01 00:00:00

pages

92-126

issue

1

eissn

0025-5564

issn

1879-3134

pii

S0025-5564(05)00032-5

journal_volume

195

pub_type

杂志文章
  • Effect of aggregating behavior on population recovery on a set of habitat islands.

    abstract::We consider a single-species model which is composed of several patches connected by linear migration rates and having logistic growth with a threshold. We show the existence of an aggregating mechanism that allows the survival of a species which is in danger of extinction due to its low population density. Numerical ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(00)00005-5

    authors: Padrón V,Trevisan MC

    更新日期:2000-05-01 00:00:00

  • Limiting characteristics for finite birth-death-catastrophe processes.

    abstract::General nonstationary birth-death process with possible catastrophes on finite state space is studied. The approach for obtaining the bounds on the rates of convergence to the limiting characteristics is outlined. Method for construction of the limiting characteristics is proposed. We also show that, as a rule, the in...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2013.02.009

    authors: Zeifman A,Satin Y,Panfilova T

    更新日期:2013-09-01 00:00:00

  • Evaluating spread of invaders from gravity scores--a way of using gravity models in ecology.

    abstract::This study is a theoretical excursion into gravity models and their usability in evaluating importance of spatial structure and population development for the spread of colonizing organisms. A so called "gravity score" for sites is deduced, and such a score could be used for predicting risk of colonization once one si...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2009.08.008

    authors: Järemo J

    更新日期:2009-11-01 00:00:00

  • Visibility in a pure model of golden spiral phyllotaxis.

    abstract::This paper considers the geometry of plants with golden spiral phyllotaxis, i.e. growing leaf by leaf on a spiral with golden divergence angle, via the simplest mathematical model, a cylinder with regular arrangement of points on its surface. As is well-known, Fibonacci numbers appear by means of the order of parastic...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2018.05.003

    authors: Herrmann B

    更新日期:2018-07-01 00:00:00

  • Global dynamics of an SEIR epidemic model with saturating contact rate.

    abstract::Heesterbeek and Metz [J. Math. Biol. 31 (1993) 529] derived an expression for the saturating contact rate of individual contacts in an epidemiological model. In this paper, the SEIR model with this saturating contact rate is studied. The basic reproduction number R0 is proved to be a sharp threshold which completely d...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(03)00087-7

    authors: Zhang J,Ma Z

    更新日期:2003-09-01 00:00:00

  • Influence of tissue metabolism and capillary oxygen supply on arteriolar oxygen transport: a computational model.

    abstract::We present a theoretical model for steady-state radial and longitudinal oxygen transport in arterioles containing flowing blood (plasma and red blood cells) and surrounded by living tissue. This model combines a detailed description of convective and diffusive oxygen transport inside the arteriole with a novel boundar...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2011.03.010

    authors: Moschandreou TE,Ellis CG,Goldman D

    更新日期:2011-07-01 00:00:00

  • Four-state models and regulation of contraction of smooth muscle. I. Physical considerations, stability, and solutions.

    abstract::Cyclic four-state models are frequently used in biology to represent a variety of molecular behaviors. A common experimental strategy to test such models is to follow the behavior of the real system after some of the rate constants are changed in a stepwise manner. We analyze the mathematical behavior of a simple exam...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(92)90086-c

    authors: Lazalde CA,Barr L

    更新日期:1992-11-01 00:00:00

  • Mathematics of protein pathological misfolding.

    abstract::"Protein folding is defined as a process by which a polypeptide chain performs a search in conformational space with the objective of achieving the so-called native conformation to global free-energy minimum under a given set of physiochemical conditions of the medium." Misfolding then, is the process by which this ob...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章,评审

    doi:10.1016/j.mbs.2006.08.008

    authors: Armah EO

    更新日期:2007-07-01 00:00:00

  • Robust model matching design methodology for a stochastic synthetic gene network.

    abstract::Synthetic biology has shown its potential and promising applications in the last decade. However, many synthetic gene networks cannot work properly and maintain their desired behaviors due to intrinsic parameter variations and extrinsic disturbances. In this study, the intrinsic parameter uncertainties and external di...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2010.12.007

    authors: Chen BS,Chang CH,Wang YC,Wu CH,Lee HC

    更新日期:2011-03-01 00:00:00

  • Mean and quasideterministic equivalence for linear stochastic dynamics.

    abstract::In linear, stochastic dynamics it is shown that the quasideterministic population size is equivalent to the mean population size. The quasideterministic dynamics are defined by the conditional infinitesimal mean of the process. The stochastic component of the dynamics includes both Gaussian and Poisson white noise, wi...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(89)90010-2

    authors: Hanson FB,Ryan D

    更新日期:1989-03-01 00:00:00

  • Modeling multispecies biofilms including new bacterial species invasion.

    abstract::A mathematical model for multispecies biofilm evolution based on continuum approach and mass conservation principles is presented. The model can describe biofilm growth dynamics including spatial distribution of microbial species, substrate concentrations, attachment, and detachment, and, in particular, is able to pre...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2014.10.009

    authors: D'Acunto B,Frunzo L,Klapper I,Mattei MR

    更新日期:2015-01-01 00:00:00

  • Kinetics of the formation of a protein corona around nanoparticles.

    abstract::Interaction of metal or oxide nanoparticles (NPs) with biological soft matter is one of the central phenomena in basic and applied biology-oriented nanoscience. Often, this interaction includes adsorption of suspended proteins on the NP surface, resulting in the formation of the protein corona around NPs. Structurally...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.09.018

    authors: Zhdanov VP,Cho NJ

    更新日期:2016-12-01 00:00:00

  • Stochastic models for ion channels: introduction and bibliography.

    abstract::This paper provides an introduction to and overview of the use of stochastic models and statistical analysis in the study of ion channels in cell membranes. An extensive bibliography is included. ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章,评审

    doi:10.1016/0025-5564(92)90023-p

    authors: Ball FG,Rice JA

    更新日期:1992-12-01 00:00:00

  • A stochastic model for the spread of a sexually transmitted disease which results in a scale-free network.

    abstract::A stochastic model for the spread of a sexually transmitted disease (STD) is presented. To reflect varying degrees of promiscuity among individuals it is assumed that the infectivity of any infected individual is proportional to the number of previous contacts the individual has had with other infected individuals. In...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2005.12.016

    authors: Reed WJ

    更新日期:2006-05-01 00:00:00

  • A differential-delay model of pasture accumulation and loss in controlled grazing systems.

    abstract::A grazing population dynamics model is proposed where organisms in a grazed population have a fixed life span. The motivating context is that of ruminants grazing grass-dominant pasture. The model takes the form of a differential-delay equation in which the rate of loss of pasture due to senescence at some time depend...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(94)90031-0

    authors: Woodward SJ,Wake GC

    更新日期:1994-05-01 00:00:00

  • Probability density functions for axial ratios of sectioning profiles of anisotropically arranged elliptical microvessels.

    abstract::The article theoretically regards probability density functions (PDFs) for axial ratio (X/Y) of sectioning profiles of elliptical microvessels (MVs) arranged with anisotropy in a biological tissue volume. A technique for the PDF(X/Y) calculations in anisotropy of the elliptical MVs is described. The essence of this te...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2009.03.001

    authors: Krasnoperov RA,Gerasimov AN

    更新日期:2009-06-01 00:00:00

  • Optimal harvesting and optimal vaccination.

    abstract::Two optimization problems are considered: Harvesting from a structured population with maximal gain subject to the condition of non-extinction, and vaccinating a population with prescribed reduction of the reproduction number of the disease at minimal costs. It is shown that these problems have a similar structure and...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2005.09.001

    authors: Hadeler KP,Müller J

    更新日期:2007-04-01 00:00:00

  • Global dynamics of a discrete age-structured SIR epidemic model with applications to measles vaccination strategies.

    abstract::We investigate an SIR epidemic model with discrete age groups to understand the transmission dynamics of an infectious disease in a host population with an age structure. We derive the basic reproduction number R0 and show that it is a sharp threshold parameter. If R0≤1, the disease-free equilibrium E0 is globally sta...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2018.12.003

    authors: Zhou L,Wang Y,Xiao Y,Li MY

    更新日期:2019-02-01 00:00:00

  • A new approach of fitting biomass dynamics models to data.

    abstract::A non-traditional approach of fitting dynamic resource biomass models to data is developed in this paper. A variational adjoint technique is used for dynamic parameter estimation. In the variational formulation, a cost function measuring the distance between the model solution and the observations is minimized. The da...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(02)00178-5

    authors: Ussif AA,Sandal LK,Steinshamn SI

    更新日期:2003-03-01 00:00:00

  • Infection dynamics in HIV-specific CD4 T cells: does a CD4 T cell boost benefit the host or the virus?

    abstract::Recent experimental data have shown that HIV-specific CD4 T cells provide a very important target for HIV replication. We use mathematical models to explore the effect of specific CD4 T cell infection on the dynamics of virus spread and immune responses. Infected CD4 T cells can provide antigen for their own stimulati...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2007.01.007

    authors: Wodarz D,Hamer DH

    更新日期:2007-09-01 00:00:00

  • Spread of excitation in 3-D models of the anisotropic cardiac tissue. III. Effects of ventricular geometry and fiber structure on the potential distribution.

    abstract::In a previous paper we studied the spread of excitation in a simplified model of the left ventricle, affected by fiber structure and obliqueness, curvature of the wall and Purkinje network. In the present paper we investigate the extracellular potential distribution u in the same ventricular model. Given the transmemb...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(98)10004-4

    authors: Colli Franzone P,Guerri L,Pennacchio M,Taccardi B

    更新日期:1998-07-01 00:00:00

  • Theory of the locomotion of nematodes: control of the somatic motor neurons by interneurons.

    abstract::The only animal of which the complete neural circuitry is known at the submicroscopical level is the nematode Caenorhabditis elegans. This anatomical knowledge is complemented by functional insight from electrophysiological experiments in the related nematode Ascaris lumbricoides, which show that Ascaris motor neurons...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(93)90033-7

    authors: Niebur E,Erdös P

    更新日期:1993-11-01 00:00:00

  • A new five-parameter Birnbaum-Saunders distribution for modeling bicoid gene expression data.

    abstract::An extended version of Birnbaum-Saunders distribution with five parameters is introduced. Theoretical aspects of five-parameter Birnbaum-Saunders distribution and the maximum likelihood estimation of parameters are presented. The reliability and applicability of the proposed distribution is evaluated using both simula...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2019.108275

    authors: Hassani H,Kalantari M,Entezarian MR

    更新日期:2020-01-01 00:00:00

  • Patient-specific modeling of the neuroendocrine HPA-axis and its relation to depression: Ultradian and circadian oscillations.

    abstract::In the Western world approximately 10% of the population experience severe depression at least once in their lifetime and many more experience a mild form of depression. Depression has been associated with malfunctions in the hypothalamus-pituitary-adrenal (HPA) axis. We suggest a novel mechanistic non-linear model ca...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2014.07.013

    authors: Gudmand-Hoeyer J,Timmermann S,Ottesen JT

    更新日期:2014-11-01 00:00:00

  • Deterministic epidemic models with explicit household structure.

    abstract::For a wide range of airborne infectious diseases, transmission within the family or household is a key mechanism for the spread and persistence of infection. In general, household-based transmission is relatively strong but only involves a limited number of individuals in contact with each infectious person. In contra...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2008.01.011

    authors: House T,Keeling MJ

    更新日期:2008-05-01 00:00:00

  • Some exact solutions of a generalized Fisher equation related to the problem of biological invasion.

    abstract::The problem of biological invasion in a model single-species community is considered, the spatiotemporal dynamics of the system being described by a modified Fisher equation. For a special case, we obtain an exact solution describing self-similar growth of the initially inhabited domain. By comparison with numerical s...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(01)00068-2

    authors: Petrovskii S,Shigesada N

    更新日期:2001-08-01 00:00:00

  • Prediction of aptamer-protein interacting pairs based on sparse autoencoder feature extraction and an ensemble classifier.

    abstract::Aptamer-protein interacting pairs play important roles in physiological functions and structural characterization. Identifying aptamer-protein interacting pairs is challenging and limited, despite of the tremendous applications of aptamers. Therefore, it is vital to construct a high prediction performance model for id...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2019.01.009

    authors: Yang Q,Jia C,Li T

    更新日期:2019-05-01 00:00:00

  • Evaluating treatment of hepatitis C for hemolytic anemia management.

    abstract::The combination therapy of antiviral peg-interferon and ribavirin has evolved as one of the better treatments for hepatitis C. In spite of its success in controlling hepatitis C infection, it has also been associated with treatment-related adverse side effects. The most common and life threatening among them is hemoly...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2010.02.005

    authors: DebRoy S,Kribs-Zaleta C,Mubayi A,Cardona-Meléndez GM,Medina-Rios L,Kang M,Diaz E

    更新日期:2010-06-01 00:00:00

  • Simulating patterns of excitation, repolarization and action potential duration with cardiac Bidomain and Monodomain models.

    abstract::Parallel numerical simulations of excitation and recovery in three-dimensional myocardial domains are presented. The simulations are based on the anisotropic Bidomain and Monodomain models, including intramural fiber rotation and orthotropic or axisymmetric anisotropy of the intra- and extra-cellular conductivity tens...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2005.04.003

    authors: Colli Franzone P,Pavarino LF,Taccardi B

    更新日期:2005-09-01 00:00:00

  • New statistical tools for analyzing the structure of animal groups.

    abstract::The statistical characterization of the spatial structure of large animal groups has been very limited so far, mainly due to a lack of empirical data, especially in three dimensions (3D). Here we focus on the case of large flocks of starlings (Sturnus vulgaris) in the field. We reconstruct the 3D positions of individu...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2008.05.006

    authors: Cavagna A,Cimarelli A,Giardina I,Orlandi A,Parisi G,Procaccini A,Santagati R,Stefanini F

    更新日期:2008-07-01 00:00:00