Modeling multispecies biofilms including new bacterial species invasion.

Abstract:

:A mathematical model for multispecies biofilm evolution based on continuum approach and mass conservation principles is presented. The model can describe biofilm growth dynamics including spatial distribution of microbial species, substrate concentrations, attachment, and detachment, and, in particular, is able to predict the biological process of colonization of new species and transport from bulk liquid to biofilm (or vice-versa). From a mathematical point of view, a significant feature is the boundary condition related to biofilm species concentrations on the biofilm free boundary. These data, either for new or for already existing species, are not required by this model, but rather can be predicted as results. Numerical solutions for representative examples are obtained by the method of characteristics. Results indicate that colonizing bacteria diffuse into biofilm and grow only where favorable environmental conditions exist for their development.

journal_name

Math Biosci

journal_title

Mathematical biosciences

authors

D'Acunto B,Frunzo L,Klapper I,Mattei MR

doi

10.1016/j.mbs.2014.10.009

subject

Has Abstract

pub_date

2015-01-01 00:00:00

pages

20-6

eissn

0025-5564

issn

1879-3134

pii

S0025-5564(14)00224-7

journal_volume

259

pub_type

杂志文章
  • Which facilitates the evolution of cooperation more, retaliation or persistence?

    abstract::The existence of cooperation in this world is a mysterious phenomenon. One of the mechanisms that explain the evolution of cooperation is repeated interaction. If interactions between the same individuals repeat and individuals cooperate conditionally, cooperation can evolve. A previous study pointed out that if indiv...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2017.04.002

    authors: Kurokawa S

    更新日期:2017-07-01 00:00:00

  • Mathematical modeling of T-cell proliferation.

    abstract::A mathematical model of the T-lymphocyte proliferation process (in vivo and in vitro) is presented. This model takes into account cell-cycle progression and the regulation by lymphokines (lymphocyte activating factor interleukin 1 and T-cell growth factor interleukin 2). Using data on the generalized picture of the sh...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(93)90071-h

    authors: Sidorov IA,Romanyukha AA

    更新日期:1993-06-01 00:00:00

  • Optimization methods for decision making in disease prevention and epidemic control.

    abstract::This paper investigates problems of disease prevention and epidemic control (DPEC), in which we optimize two sets of decisions: (i) vaccinating individuals and (ii) closing locations, given respective budgets with the goal of minimizing the expected number of infected individuals after intervention. The spread of dise...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2013.09.007

    authors: Deng Y,Shen S,Vorobeychik Y

    更新日期:2013-11-01 00:00:00

  • Multiscale analysis of pattern formation via intercellular signalling.

    abstract::Lateral inhibition, a juxtacrine signalling mechanism by which a cell adopting a particular fate inhibits neighbouring cells from doing likewise, has been shown to be a robust mechanism for the formation of fine-grained spatial patterns (in which adjacent cells in developing tissues diverge to achieve contrasting stat...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2011.03.003

    authors: O'Dea RD,King JR

    更新日期:2011-06-01 00:00:00

  • Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria infection.

    abstract::Malaria is an infectious disease present all around the globe and responsible for half a million deaths per year. A within-host model of this infection requires a framework capable of properly approximating not only the blood stage of the infection but also the erythropoietic process that is in charge of overcoming th...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2015.08.020

    authors: Fonseca LL,Voit EO

    更新日期:2015-12-01 00:00:00

  • Modelling the role of CtfA/B in reverse shift continuous culture experiments of Clostridium acetobutylicum.

    abstract::In continuous phosphate-limited conditions, under pH control from high pH (pH ≳ 5.2) to low pH (pH ≲ 5.2), the metabolism of the Gram-positive bacterium Clostridium acetobutylicum,switches from acid to solvent production. Three main enzymes are responsible for the shift, acetoacetate decarboxylase (Adc), alcohol dehyd...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.03.003

    authors: Thorn GJ,King JR

    更新日期:2016-06-01 00:00:00

  • A multiscale theoretical model for diffusive mass transfer in cellular biological media.

    abstract::An integrated methodology is developed for the theoretical analysis of solute transport and reaction in cellular biological media, such as tissues, microbial flocs, and biofilms. First, the method of local spatial averaging with a weight function is used to establish the equation which describes solute conservation at...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2007.04.008

    authors: Kapellos GE,Alexiou TS,Payatakes AC

    更新日期:2007-11-01 00:00:00

  • Simulating patterns of excitation, repolarization and action potential duration with cardiac Bidomain and Monodomain models.

    abstract::Parallel numerical simulations of excitation and recovery in three-dimensional myocardial domains are presented. The simulations are based on the anisotropic Bidomain and Monodomain models, including intramural fiber rotation and orthotropic or axisymmetric anisotropy of the intra- and extra-cellular conductivity tens...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2005.04.003

    authors: Colli Franzone P,Pavarino LF,Taccardi B

    更新日期:2005-09-01 00:00:00

  • Stability and Hopf bifurcation for a prey-predator model with prey-stage structure and diffusion.

    abstract::In this paper, we first propose a prey-predator model with prey-stage structure and diffusion. Then we discuss the following three problems: (1) stability of non-negative constant steady states for the reduced ODE system and the corresponding reaction diffusion system with homogeneous Neumann boundary conditions; (2) ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2007.08.008

    authors: Wang M

    更新日期:2008-04-01 00:00:00

  • Recent advances in mathematical modeling and statistical analysis of exocytosis in endocrine cells.

    abstract::Most endocrine cells secrete hormones as a result of Ca2+-regulated exocytosis, i.e., fusion of the membranes of hormone-containing secretory granules with the cell membrane, which allows the hormone molecules to escape to the extracellular space. As in neurons, electrical activity and cell depolarization open voltage...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章,评审

    doi:10.1016/j.mbs.2016.11.010

    authors: Pedersen MG,Tagliavini A,Cortese G,Riz M,Montefusco F

    更新日期:2017-01-01 00:00:00

  • An age-structured model for pertussis transmission.

    abstract::The vaccination program for pertussis (whooping cough) in the United States consists of giving multiple doses of pertussis vaccine to young children. A demographic model with a steady-state age distribution is used as a basis for building an epidemiologic model for the transmission of pertussis. This age-structured mo...

    journal_title:Mathematical biosciences

    pub_type: 历史文章,杂志文章

    doi:10.1016/s0025-5564(97)00014-x

    authors: Hethcote HW

    更新日期:1997-10-15 00:00:00

  • Prediction of N-linked glycan branching patterns using artificial neural networks.

    abstract::A model was developed for novel prediction of N-linked glycan branching pattern classification for CHO-derived N-linked glycoproteins. The model consists of 30 independent recurrent neural networks and uses predicted quantities of secondary structure elements and residue solvent accessibility as an input vector. The m...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2007.10.005

    authors: Senger RS,Karim MN

    更新日期:2008-01-01 00:00:00

  • The agreement metric for labeled binary trees.

    abstract::Let S be a set of n objects. A binary tree of S is a binary tree whose leaves are labeled without repetition from S. The operation of pruning a tree T is that of removing some leaves from T and suppressing all inner vertices of degree 2 which are formed by this deletion. Given two trees T and U, an agreement tree is a...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(94)90012-4

    authors: Goddard W,Kubicka E,Kubicki G,McMorris FR

    更新日期:1994-10-01 00:00:00

  • Partial identification of underdetermined compartmental models: a method based on positive linear Lyapunov functions.

    abstract::A class of models is considered in which the number of unknown parameters exceeds the number of independent equations that are derived from the input/observation configuration. It is shown that, under certain circumstances, if the number of unknown parameters is sufficiently decreased by setting some of the exit param...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(95)00049-6

    authors: Eisenfeld J

    更新日期:1996-03-01 00:00:00

  • Genetic oscillation deduced from Hopf bifurcation in a genetic regulatory network with delays.

    abstract::To understand how a gene regulatory network functioning as an oscillator is built, a genetic regulatory network with two transcriptional delays is investigated. We show by mathematical analysis and simulation that autorepression of mRNA and protein can provide a mechanism for the intracellular oscillator. Based on the...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2008.05.004

    authors: Xiao M,Cao J

    更新日期:2008-09-01 00:00:00

  • Model parameter uncertainties in a dual-species biofilm competition model affect ecological output parameters much stronger than morphological ones.

    abstract::Bacterial biofilms are complex microbial depositions on immersed interfaces that form wherever the environmental conditions sustain microbial growth. Despite their name, biofilms can develop in highly irregular structures. Recently several mathematical concepts have been introduced to model these spatially structured ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2011.05.006

    authors: Muhammad N,Eberl HJ

    更新日期:2011-09-01 00:00:00

  • Stochastic optimal therapy for enhanced immune response.

    abstract::Therapeutic enhancement of humoral immune response to microbial attack is addressed as the stochastic optimal control of a dynamic system. Without therapy, the modeled immune response depends upon the initial concentration of pathogens in a simulated attack. Immune response can be augmented by agents that kill the pat...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2004.06.004

    authors: Stengel RF,Ghigliazza R

    更新日期:2004-10-01 00:00:00

  • Age-density dependent population dispersal in RN.

    abstract::We discuss an N-dimensional model for diffusion of age dependent populations. Let rho(x, t, a) be the population density at time t, age a and spatial position x, and let u(x, t) = [formula: see text] rho(x, t, a) da be the total population at t and x. The directed dispersal model to be discussed, with diffusion depend...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(97)10014-1

    authors: Hernández GE

    更新日期:1998-04-01 00:00:00

  • Influence of concurrency, partner choice, and viral suppression on racial disparity in the prevalence of HIV infected women.

    abstract::In 1992, Watts and May introduced a simple dynamical systems model of the spread of HIV based on disease transmission per partnership including the length of partnership duration. This model allowed for the treatment of concurrent partnerships, although it was hampered by the assumption of an important latent phase wh...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.09.009

    authors: Gurski KF,Hoffman KA

    更新日期:2016-12-01 00:00:00

  • A class of phylogenetic networks reconstructable from ancestral profiles.

    abstract::Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set X of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate processes (for example, hybrid evolution, endosymbiosis, and lateral gene transfer). A...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2019.04.009

    authors: Erdős PL,Semple C,Steel M

    更新日期:2019-07-01 00:00:00

  • The principle of interval constraints: a generalization of the symmetric Dirichlet distribution.

    abstract::A structure for representing problems in decision analysis and in expert systems, which reason under uncertainty, is the influence diagram or causal network. A causal network consists of an underlying joint probability distribution and a directed acyclic graph in which a propositional variable that represents a margin...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(91)90089-2

    authors: Neapolitan RE

    更新日期:1991-02-01 00:00:00

  • Spreading of excitation in 3-D models of the anisotropic cardiac tissue. I. Validation of the eikonal model.

    abstract::In this work we investigate, by means of numerical simulations, the performance of two mathematical models describing the spread of excitation in a three dimensional block representing anisotropic cardiac tissue. The first model is characterized by a reaction-diffusion system in the transmembrane and extracellular pot...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(93)90001-q

    authors: Franzone PC,Guerri L

    更新日期:1993-02-01 00:00:00

  • Wave of chaos in a spatial eco-epidemiological system: Generating realistic patterns of patchiness in rabbit-lynx dynamics.

    abstract::In the present paper, we propose and analyze an eco-epidemiological model with diffusion to study the dynamics of rabbit populations which are consumed by lynx populations. Existence, boundedness, stability and bifurcation analyses of solutions for the proposed rabbit-lynx model are performed. Results show that in the...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.08.014

    authors: Upadhyay RK,Roy P,Venkataraman C,Madzvamuse A

    更新日期:2016-11-01 00:00:00

  • Numerical solution of inward solidification of a dilute ternary solution towards a semi-permeable spherical cell.

    abstract::Modeling a cell's response to encroaching ice has informed the development of cryopreservation protocols for four decades. It has been well documented that knowledge of the cellular state as a function of media and cooling rate faciliate informed cryopreservation protocol design and explain mechanisms of damage. Howev...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2019.108240

    authors: Anderson DM,Benson JD,Kearsley AJ

    更新日期:2019-10-01 00:00:00

  • Analysis of logistic growth models.

    abstract::A variety of growth curves have been developed to model both unpredated, intraspecific population dynamics and more general biological growth. Most predictive models are shown to be based on variations of the classical Verhulst logistic growth equation. We review and compare several such models and analyse properties ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(02)00096-2

    authors: Tsoularis A,Wallace J

    更新日期:2002-07-01 00:00:00

  • Subthreshold and superthreshold coexistence of pathogen variants: the impact of host age-structure.

    abstract::It is well known that in the most general epidemic models with multiple pathogen variants a competitive exclusion principle is valid, such that the variant with the highest reproduction number eliminates the rest. Mechanisms such as super-infection, coinfection, and cross-immunity can lead to pathogen polymorphism whe...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.09.010

    authors: Martcheva M,Pilyugin SS,Holt RD

    更新日期:2007-05-01 00:00:00

  • On the robustness of regular systems of inbreeding.

    abstract::Half-sib, first cousin, half nth cousin, and nth cousin mating systems are robust in that small deviations from the mating structure will not significantly alter the levels of genetic identity or effect qualitative distinctions between the models. Substitution of nearest kin in matings may either increase or decrease ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(91)90026-f

    authors: Campbell RB

    更新日期:1991-04-01 00:00:00

  • A new approach to reconstruction models of dendritic branching patterns.

    abstract::Quantitative models for characterising the detailed branching patterns of dendritic trees aim to explain these patterns either in terms of growth models based on principles of dendritic development or reconstruction models that describe an existing structure by means of a canonical set of elementary properties of dend...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.08.005

    authors: Lindsay KA,Maxwell DJ,Rosenberg JR,Tucker G

    更新日期:2007-02-01 00:00:00

  • A geometrical model for diffusion of hydrophilic compounds in human stratum corneum.

    abstract::A three-dimensional diffusion model with either hexagonal or cylindrical symmetry has been constructed to simulate desorption profiles of hydrophilic chemicals from the topmost layer of human skin (the stratum corneum) as measured in ex vivo studies. The tissue is pierced by skin appendages - sweat glands and hair fol...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2018.03.010

    authors: Yu F,Kasting GB

    更新日期:2018-06-01 00:00:00

  • A sigmoidal model for biosorption of heavy metal cations from aqueous media.

    abstract::A novel multi-input single output (MISO) black-box sigmoid model is developed to simulate the biosorption of heavy metal cations by the fission yeast from aqueous medium. Validation and verification of the model is done through statistical chi-squared hypothesis tests and the model is evaluated by uncertainty and sens...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2015.04.007

    authors: Özen R,Sayar NA,Durmaz-Sam S,Sayar AA

    更新日期:2015-07-01 00:00:00