Abstract：
:To understand how a gene regulatory network functioning as an oscillator is built, a genetic regulatory network with two transcriptional delays is investigated. We show by mathematical analysis and simulation that autorepression of mRNA and protein can provide a mechanism for the intracellular oscillator. Based on the linear stability approach and bifurcation theory, sufficient conditions for the oscillation of the genetic networks are derived, and critical values of Hopf bifurcation are assessed. In particular, the genetic network can exhibit Hopf bifurcation(oscillation appears) as the sum of delays or transcriptional rate passes through some critical values. Moreover, the robustness of amplitudes against change in delay can also be obtained from the delayed genetic network; period of oscillation increases with the total time delay in an almost linear way. While it is exactly opposite for transcriptional rate, the amplitude of oscillations always increases as the transcriptional rate increases; the robustness of period against change in the transcriptional rate occurs. Some simple genetic regulatory networks are used to study the impact of delays and transcriptional rate on the system dynamics where there are delays.
journal_name
Math Bioscijournal_title
Mathematical biosciencesauthors
Xiao M,Cao Jdoi
10.1016/j.mbs.2008.05.004subject
Has Abstractpub_date
2008-09-01 00:00:00pages
55-63issue
1eissn
0025-5564issn
1879-3134pii
S0025-5564(08)00078-3journal_volume
215pub_type
杂志文章abstract：:We investigate a mathematical model of tumor-immune interactions with chemotherapy, and strategies for optimally administering treatment. In this paper we analyze the dynamics of this model, characterize the optimal controls related to drug therapy, and discuss numerical results of the optimal strategies. The form of ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2006.05.003
更新日期：2007-09-01 00:00:00
abstract：:Bone modeling and remodeling has been the subject of extensive experimental studies. There have been several mathematical models proposed to explain the observed behavior, as well. A different approach is taken here in which the bone is treated from a macroscopic view point. In this investigation, a one-dimensional an...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2010.12.008
更新日期：2011-03-01 00:00:00
abstract：:The statistical characterization of the spatial structure of large animal groups has been very limited so far, mainly due to a lack of empirical data, especially in three dimensions (3D). Here we focus on the case of large flocks of starlings (Sturnus vulgaris) in the field. We reconstruct the 3D positions of individu...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2008.05.006
更新日期：2008-07-01 00:00:00
abstract：:In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their contribution to overall phylogenetic diversity. However, in many cas...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2018.02.005
更新日期：2018-04-01 00:00:00
abstract：:In a standard procedure of food safety testing, the presence of the pathogenic bacterium Listeria monocytogenes can be masked by non-pathogenic Listeria. This phenomenon of Listeria overgrowth is not well understood. We present a mathematical model for the growth of a mixed population of L. innocua and L. monocytogene...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2013.10.008
更新日期：2014-01-01 00:00:00
abstract：:According to metapopulation theory, the capacity of a habitat patch network to support the persistence of a species is measured by the metapopulation capacity of the patch network. Mathematically, metapopulation capacity is given by the leading eigenvalue lambda(M) of an appropriately constructed non-negative n x n ma...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(02)00150-5
更新日期：2003-02-01 00:00:00
abstract：:An epidemic model with multiple stages of infection is studied. The model allows for infected individuals to move from advanced stages of infection back to less advanced stages of infection. A threshold parameter which determines the local stability of the disease free equilibrium is found and interpreted. Under condi...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(02)00149-9
更新日期：2003-01-01 00:00:00
abstract：:We discuss an N-dimensional model for diffusion of age dependent populations. Let rho(x, t, a) be the population density at time t, age a and spatial position x, and let u(x, t) = [formula: see text] rho(x, t, a) da be the total population at t and x. The directed dispersal model to be discussed, with diffusion depend...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(97)10014-1
更新日期：1998-04-01 00:00:00
abstract：:In this paper we study the dynamics of two competing species when one of them is subject to a disease. In order to keep the model simple, we present it under the strong assumption that the disease cannot cross the species barrier. We answer several important questions about the long term behavior of the environment. I...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(01)00081-5
更新日期：2001-12-01 00:00:00
abstract：:This paper describes an efficient method for tracing interactions between a radiation track and molecular targets in a cell or nucleus. The method is efficient because it ensures that a minimal subset of interactions in the track needs to be tested for each score. It is most useful for high-energy particles since the ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(98)10045-7
更新日期：1998-12-15 00:00:00
abstract：:Let S be a set of n objects. A binary tree of S is a binary tree whose leaves are labeled without repetition from S. The operation of pruning a tree T is that of removing some leaves from T and suppressing all inner vertices of degree 2 which are formed by this deletion. Given two trees T and U, an agreement tree is a...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(94)90012-4
更新日期：1994-10-01 00:00:00
abstract：:A stochastic epidemic model is formulated for the study of the protective effects of vaccination in a population that is stratified by vaccine-related factors. The epidemic model is transformed into a counting process, and then martingale-based methods are used to provide estimators of vaccine efficacy and their varia...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(93)90028-9
更新日期：1993-09-01 00:00:00
abstract：:Many mathematical models in biology and physiology are represented by systems of nonlinear differential equations. In recent years these models have become increasingly complex in order to explain the enormous volume of data now available. A key role of modellers is to determine which components of the model have the ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2013.12.011
更新日期：2014-02-01 00:00:00
abstract：:This article examines the functional and clinical impact of time delays that arise in human physiological systems, especially control systems. An overview of the mathematical and physiological contexts for considering time delays will be illustrated, from the system level to cell level, by examining models that incorp...
journal_title：Mathematical biosciences
pub_type： 杂志文章,评审
doi：10.1016/j.mbs.2011.08.006
更新日期：2011-12-01 00:00:00
abstract：:The aim of this paper is to develop a minimal model describing events leading to the onset of Parkinson's disease (PD). The model accounts for α-synuclein (α-syn) production in the soma, transport toward the synapse, misfolding, and aggregation. The production and aggregation of polymeric α-syn is simulated using a mi...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2016.05.002
更新日期：2016-08-01 00:00:00
abstract：:The Yule process generates a class of binary trees which is fundamental to population genetic models and other applications in evolutionary biology. In this paper, we introduce a family of sub-classes of ranked trees, called Ω-trees, which are characterized by imbalance of internal nodes. The degree of imbalance is de...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2013.08.008
更新日期：2013-11-01 00:00:00
abstract：:The aim of this paper is to apply machine learning as a method to refine a manually constructed CPN for the assessment of the severity of the systemic inflammatory response syndrome (SIRS).The goal of tuning the CPN is to create a scoring system that uses only objective data, compares favourably with other severity-sc...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2016.11.004
更新日期：2017-02-01 00:00:00
abstract：:In this work, we derive and analyze a 2n+1-dimensional deterministic differential equation modeling the transmission and treatment of HIV (Human Immunodeficiency Virus) disease. The model is extended to a stochastic differential equation by introducing noise in the transmission rate of the disease. A theoretical treat...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2018.03.013
更新日期：2018-05-01 00:00:00
abstract：:Methods of phylogenetic inference use more and more complex models to generate trees from data. However, even simple models and their implications are not fully understood. Here, we investigate the two-state Markov model on a tripod tree, inferring conditions under which a given set of observations gives rise to such ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2012.03.001
更新日期：2012-05-01 00:00:00
abstract：:We present a theoretical model for steady-state radial and longitudinal oxygen transport in arterioles containing flowing blood (plasma and red blood cells) and surrounded by living tissue. This model combines a detailed description of convective and diffusive oxygen transport inside the arteriole with a novel boundar...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2011.03.010
更新日期：2011-07-01 00:00:00
abstract：:In this paper, a mathematical modeling framework is presented which describes the growth, encapsulation, and transcapsular spread of solid tumors. The model is based on the physical forces and cellular interactions involved in tumorigenesis and is used to test and compare the active (foreign body hypothesis) and passi...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(02)00118-9
更新日期：2002-11-01 00:00:00
abstract：OBJECTIVE:Biological processes actually are a dynamic molecular process over time. Time course gene expression experiments provide opportunities to explore patterns of gene expression change over a time and understand the dynamic behavior of gene expression, which is crucial for study on development and progression of ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2016.08.012
更新日期：2016-11-01 00:00:00
abstract：:A pandemic of a novel Coronavirus emerged in December of 2019 (COVID-19), causing devastating public health impact across the world. In the absence of a safe and effective vaccine or antivirals, strategies for controlling and mitigating the burden of the pandemic are focused on non-pharmaceutical interventions, such a...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2020.108364
更新日期：2020-07-01 00:00:00
abstract：:Emergency vaccination during an epidemic of classical swine fever virus (CSFV) has become a serious option because of the ethical problems of strategies with massive culling and the availability of a marker vaccine that reduces virus transmission. Here we present a model of between-herd CSFV transmission, which quanti...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2003.08.005
更新日期：2003-12-01 00:00:00
abstract：:In this paper, we consider a deterministic malaria transmission model with standard incidence rate and treatment. Human population is divided into susceptible, infectious and recovered subclasses, and mosquito population is split into susceptible and infectious classes. It is assumed that, among individuals with malar...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2015.05.005
更新日期：2015-08-01 00:00:00
abstract：:Using the coalescent process, DNA sequences of a sample of individuals can be used to study the phylogenetic history of the individuals. Under the infinitely-many-sites mutation model, the DNA sequence data can be summarized by the number of segregating sites (which is numerically equivalent to the number of mutations...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(98)10029-9
更新日期：1998-10-01 00:00:00
abstract：:This paper considers complex models arising in sociobiology. These combine genetic and strategic aspects to model the effect of gene-linked strategies on the ability of individuals to survive to maturity, mate and produce offspring. Several important models considered in the literature are generalised and extended to ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(98)10011-1
更新日期：1998-08-01 00:00:00
abstract：:The goal of this study is to uncover some unobservable aspects of the individual-patient natural history of metastatic renal cell carcinoma (RCC) through mathematical modeling. We analyzed four clear cell RCC patients who at the time of primary tumor resection already had pulmonary metastases. Our description of the n...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2019.01.008
更新日期：2019-03-01 00:00:00
abstract：:A multicompartmental model is proposed to deal with the spread of the HIV epidemic. Stratification with respect to high- and low-risk groups is taken into account, introducing a "fuzzy" decomposition of the compartment of susceptibles. The infectivity period is staged using different levels of CD4 cell counts. Asympto...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(91)90021-a
更新日期：1991-12-01 00:00:00
abstract：:The interrelationship between pathogen infection and host mobility is of great importance for successful spread of disease in spatial pest population. As spread of infection depends on horizontal transmission of pathogen, there are numerous factors like susceptibility, latent period, host movement that influence overa...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2013.03.009
更新日期：2013-07-01 00:00:00
