Abstract：
:"Protein folding is defined as a process by which a polypeptide chain performs a search in conformational space with the objective of achieving the so-called native conformation to global free-energy minimum under a given set of physiochemical conditions of the medium." Misfolding then, is the process by which this objective is not achieved. Protein Folding Quality Assessment (PFQA), is characterized by a three-parameter distribution function Phi(T) referred to as the PFQA function. It uses results of protein folding processes to assess the output quality of protein folding. Protein misfolding is implicated in the initial cause of many conformational diseases. Folding of cytosolic protein can be regarded as the performance of the protein after it is produced or manufactured by the synthesis processes. Protein folding through different mechanisms and pathways has been extensively covered in [J.D. Bryngelson, P.G. Wolynes, Spin glass and statistical mechanics of protein folding, Proc. Natl. Acad. Sci. USA 84 (1987) 7524; J. Wang, Statistics, pathways and dynamics of single molecule folding, J. Chem. Phys. 118 (2) (2003) 953; N.D. Socci, J.N. Onuchic, P.G. Wolynes, Diffusive dynamics of the reaction coordinates for protein folding funnels, J. Chem. Phys. 104 (14) (1996); D. Thirumalai, From minimal models to real proteins, time scales for protein folding kinetics, J. Phys. I France 5 (1995) 1457]. The model is based on growth models of Ratkowsky, Richards, etc. [D.A. Ratkowski, T.J. Reeds, Choosing near-linear parameters logistic model for radio-ligand and related assays, Biometrics 42 (1986) 575] for a three-parameters model to handle the quality assessment of the folding process. Thus a complete distribution can be found, thanks to the scale, location and shape parameters.
journal_name
Math Bioscijournal_title
Mathematical biosciencesauthors
Armah EOdoi
10.1016/j.mbs.2006.08.008subject
Has Abstractpub_date
2007-07-01 00:00:00pages
1-25issue
1eissn
0025-5564issn
1879-3134pii
S0025-5564(06)00140-4journal_volume
208pub_type
杂志文章,评审abstract：:Mathematical models are essential tools to study how the cardiovascular system maintains homeostasis. The utility of such models is limited by the accuracy of their predictions, which can be determined by uncertainty quantification (UQ). A challenge associated with the use of UQ is that many published methods assume t...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2018.07.001
更新日期：2018-10-01 00:00:00
abstract：:This paper presents a novel epidemiological transmission model of a population affected by two different susceptible-infected-susceptible infectious diseases. For each disease, individuals fall into one of the two susceptibility conditions in which one of the diseases has the highest occurrence level. This model is un...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2019.01.005
更新日期：2019-03-01 00:00:00
abstract：:Game theoretic tools are utilized to analyze a one-locus continuous selection model of sex-specific meiotic drive by considering nonequivalence of the viabilities of reciprocal heterozygotes that might be noticed at an imprinted locus. The model draws attention to the role of viability selections of different types to...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2015.10.013
更新日期：2016-01-01 00:00:00
abstract：:Transmission of an infectious agent can be quantified from experimental data using the transient-state (TS) algorithm. The TS algorithm is based on the stochastic SIR model and provides a time-dependent probability distribution over the number of infected individuals during an epidemic, with no need for the experiment...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2007.04.009
更新日期：2007-11-01 00:00:00
abstract：:The authors determine the time-dependent ligand current into a spherical cell that is covered with a large number of age-dependent receptors. These receptors can be in either of two states: active (i.e., available for ligand binding) or inactive. An active receptor turns inactive upon binding a ligand, and it can reap...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(90)90122-f
更新日期：1990-03-01 00:00:00
abstract：:The problem of moment closure is central to the study of multitype stochastic population dynamics since equations for moments up to a given order will generally involve higher-order moments. To obtain a Normal approximation, the standard approach is to replace third- and higher-order moments by zero, which may be seve...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(00)00037-7
更新日期：2000-11-01 00:00:00
abstract：:For cDNA array methods that depend on imaging of a radiolabel, we show that bleedover of one spot onto another, due to the gap between the array and the imaging media, can be a major problem. The images can be sharpened, however, using a blind convolution method based on the EM algorithm. The sharpened images look lik...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(01)00101-8
更新日期：2002-03-01 00:00:00
abstract：:A simulation method is presented for the demographic and genetic variation of age structured haploid populations. First, we use matrix analytic methods to derive an equilibrium distribution for the age class sizes conditioned on the total population size. Knowledge of this distribution eliminates the need of a burn-in...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2015.08.003
更新日期：2015-10-01 00:00:00
abstract：:Methods of phylogenetic inference use more and more complex models to generate trees from data. However, even simple models and their implications are not fully understood. Here, we investigate the two-state Markov model on a tripod tree, inferring conditions under which a given set of observations gives rise to such ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2012.03.001
更新日期：2012-05-01 00:00:00
abstract：:Subterranean termites live in large colonies under the ground where they build an elaborate network of tunnels for foraging. In this study, we explored how the termite population size can be estimated using partial information on tunnel patterns. To achieve this, we used an agent-based model to create tunnel patterns ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2019.108218
更新日期：2019-09-01 00:00:00
abstract：:In this work we investigate, by means of numerical simulations, the performance of two mathematical models describing the spread of excitation in a three dimensional block representing anisotropic cardiac tissue. The first model is characterized by a reaction-diffusion system in the transmembrane and extracellular pot...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(93)90001-q
更新日期：1993-02-01 00:00:00
abstract：:A stochastic model for hospital infection incorporating both direct transmission and indirect transmission via free-living bacteria in the environment is investigated. We examine the long term behavior of the model by calculating a stationary distribution and normal approximation of the distribution. The quasi-station...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2012.10.002
更新日期：2013-01-01 00:00:00
abstract：:We present an axiomatic approach for multilocus informativeness measures for determining the amount of information that a set of polymorphic genetic markers provides about individual ancestry. We then reveal several surprising properties of a decision-theoretic based measure that is consistent with the set of proposed...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2018.10.011
更新日期：2018-12-01 00:00:00
abstract：:In this paper we compare foraging strategies that might be used by predators seeking prey in a patchy environment. The strategies differ in the extent to which predators aggregate in response to prey density. The approach to the comparison is suggested by the idea of evolutionarily stable strategies. A strategy is sai...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(99)00027-9
更新日期：1999-08-01 00:00:00
abstract：:The problem of testing for treatment effect when some subjects in the treatment group may be unaffected by the treatment is considered. A form of the Lehmann alternative suggested by Conover and Salsburg is used that assumes that each control score has the same distribution as the minimum of the known number of respon...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(92)90052-x
更新日期：1992-04-01 00:00:00
abstract：:Amyloid beta (Aβ) peptides, and in particular Aβ42, are found in senile plaques associated with Alzheimer's disease. A compartmental model of Aβ production, exchange and irreversible loss was recently developed to explain the kinetics of isotope-labeling of Aβ peptides collected in cerebrospinal fluid (CSF) following ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2014.11.004
更新日期：2015-03-01 00:00:00
abstract：:An integrated methodology is developed for the theoretical analysis of solute transport and reaction in cellular biological media, such as tissues, microbial flocs, and biofilms. First, the method of local spatial averaging with a weight function is used to establish the equation which describes solute conservation at...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2007.04.008
更新日期：2007-11-01 00:00:00
abstract：:When ionizing radiation strikes a cell it induces DNA double strand breaks (DSBs). Subsequently, some of the DSBs misrejoin and thus cause alterations in the size distribution of the DNA fragments. We derive a system of non-linear integro-differential equations describing the misrejoining interactions of five classes ...
journal_title：Mathematical biosciences
pub_type： 杂志文章,评审
doi：10.1016/s0025-5564(98)00006-6
更新日期：1998-05-01 00:00:00
abstract：:Cell cycle duration and phase transition times are not fixed, even within homogeneous cell populations growing under optimal environmental conditions. We investigate G(1) phase variability from the molecular point of view and propose a mathematical approach to model the protein interactions regulating the transition f...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(02)00085-8
更新日期：2002-05-01 00:00:00
abstract：:We consider estimates of certain time-domain parameters of a bivariate stationary-point process based on modified periodogram statistics. These estimates are shown to be asymptotically normal under regularity conditions. In the computations of the estimates, the advantage of using the FFT algorithm is demonstrated. Th...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(91)90061-m
更新日期：1991-05-01 00:00:00
abstract：:A non-traditional approach of fitting dynamic resource biomass models to data is developed in this paper. A variational adjoint technique is used for dynamic parameter estimation. In the variational formulation, a cost function measuring the distance between the model solution and the observations is minimized. The da...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(02)00178-5
更新日期：2003-03-01 00:00:00
abstract：:An important factor in the dynamic transmission of HIV is the mobility of the population. We formulate various stochastic models for the spread of HIV in a heterosexual mobile population, under the assumptions of constant and varying population sizes. We also derive deterministic and diffusion analogues for these mode...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2006.09.024
更新日期：2007-07-01 00:00:00
abstract：:Habitat heterogeneity can have profound effects on the spreading dynamics of invasive species. Using integro-difference equations, we investigate the spreading dynamics in a one-dimensional heterogeneous landscape comprising alternating favourable and unfavourable habitat patches or randomly generated habitat patches ...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2016.02.013
更新日期：2016-05-01 00:00:00
abstract：:Frailty models are becoming increasingly popular in multivariate survival analysis. Shared frailty models in particular are often used despite their limitations. To overcome their disadvantages numerous correlated frailty models were established during the last decade. In the present study, we examine bivariate correl...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2004.11.010
更新日期：2005-11-01 00:00:00
abstract：:Two-component systems (TCSs) are widely employed by bacteria to sense specific external signals and conduct an appropriate response via a phosphorylation cascade within the cell. The TCS of the agr operon in the bacterium Staphylococcus aureus forms part of a regulatory process termed quorum sensing, a cell-to-cell co...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2010.03.001
更新日期：2010-06-01 00:00:00
abstract：:We apply to Michaelis-Menten kinetics an alternative approach to the study of Singularly Perturbed Differential Equations, that is based on the Renormalization Group (SPDERG). To this aim, we first rebuild the perturbation expansion for Michaelis-Menten kinetics, beyond the standard Quasi-Steady-State Approximation (s...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2017.11.012
更新日期：2018-05-01 00:00:00
abstract：:A mathematical model of oxygen (O2) transport within a capillary utilizes axisymmetric red blood cell (RBC) shapes that were predicted theoretically by Zarda et al. in 1977. Chemical kinetics and both free and facilitated diffusion of O2 are accounted for in this time-dependent model. The finite-element method is used...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(93)90062-f
更新日期：1993-07-01 00:00:00
abstract：:In a previous paper we studied the spread of excitation in a simplified model of the left ventricle, affected by fiber structure and obliqueness, curvature of the wall and Purkinje network. In the present paper we investigate the extracellular potential distribution u in the same ventricular model. Given the transmemb...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/s0025-5564(98)10004-4
更新日期：1998-07-01 00:00:00
abstract：:The goal of this study is to uncover some unobservable aspects of the individual-patient natural history of metastatic renal cell carcinoma (RCC) through mathematical modeling. We analyzed four clear cell RCC patients who at the time of primary tumor resection already had pulmonary metastases. Our description of the n...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/j.mbs.2019.01.008
更新日期：2019-03-01 00:00:00
abstract：:Distribution or nuclear space-valued stochastic differential equations (SDEs) (diffusions as well as discontinuous equations) are discussed as stochastic models for the behavior of voltage potentials of spatially distributed neurons. A propagation of chaos result is obtained for an interacting system of Hilbert space-...
journal_title：Mathematical biosciences
pub_type： 杂志文章
doi：10.1016/0025-5564(92)90024-q
更新日期：1992-12-01 00:00:00
