Subvoxel precise skeletons of volumetric data based on fast marching methods.

Abstract:

:The accurate calculation of the skeleton of an object is a problem not satisfactorily solved by existing approaches. Most algorithms require a significant amount of user interaction and use a voxel grid to compute discrete and often coarse approximations of this representation of the data. We present a novel, automatic algorithm for computing subvoxel precise skeletons of volumetric data based on subvoxel precise distance fields. Most voxel based centerline and skeleton algorithms start with a binary mask and end with a list of voxels that define the centerline or skeleton. Even though subsequent smoothing may be applied, the results are inherently discrete. Our skeletonization algorithm uses as input a subvoxel precise distance field and employs a number of fast marching method propagations to extract the skeleton at subvoxel precision. We present the skeletons of various three-dimensional (3D) data sets and digital phantom models as validations of our algorithm.

journal_name

Med Phys

journal_title

Medical physics

authors

Van Uitert R,Bitter I

doi

10.1118/1.2409238

subject

Has Abstract

pub_date

2007-02-01 00:00:00

pages

627-38

issue

2

eissn

0094-2405

issn

2473-4209

journal_volume

34

pub_type

杂志文章
  • Comparison of breast density measured on MR images acquired using fat-suppressed versus nonfat-suppressed sequences.

    abstract:PURPOSE:To investigate the difference of MR percent breast density measured from fat-suppressed versus nonfat-suppressed imaging sequences. METHODS:Breast magnetic resonance imaging (MRI) with and without fat suppression was acquired from 38 subjects. Breasts were divided into subgroups of different morphological patt...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.3646756

    authors: Chang DH,Chen JH,Lin M,Bahri S,Yu HJ,Mehta RS,Nie K,Hsiang DJ,Nalcioglu O,Su MY

    更新日期:2011-11-01 00:00:00

  • A statistical approach to infer the minimum setup distance of a well chamber to the wall or to the floor for 192Ir HDR calibration.

    abstract::We propose a new method based on statistical analysis technique to determine the minimum setup distance of a well chamber used in the calibration of 192Ir high dose rate (HDR). The chamber should be placed at least this distance away from any wall or from the floor in order to mitigate the effect of scatter. Three dif...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.2911156

    authors: Chang L,Ho SY,Chui CS,Lee JH,Du YC,Chen T

    更新日期:2008-06-01 00:00:00

  • A survey of the information gained from planning treatment with a computer.

    abstract::We designed a questionnaire to be filled out by the physicist at the time of planning treatment with the aid of a computer in order to assess what was learned during the course of the planning session. We analyzed the results to gauge the impact of the 70 treatment planning sessions conducted during the one month peri...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.596302

    authors: Doppke KP,Goitein M

    更新日期:1988-03-01 00:00:00

  • Projection-domain scatter correction for cone beam computed tomography using a residual convolutional neural network.

    abstract:PURPOSE:Scatter is a major factor degrading the image quality of cone beam computed tomography (CBCT). Conventional scatter correction strategies require handcrafted analytical models with ad hoc assumptions, which often leads to less accurate scatter removal. This study aims to develop an effective scatter correction ...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.13583

    authors: Nomura Y,Xu Q,Shirato H,Shimizu S,Xing L

    更新日期:2019-07-01 00:00:00

  • Determination of exit skin dose for 192Ir intracavitary accelerated partial breast irradiation with thermoluminescent dosimeters.

    abstract:PURPOSE:Intracavitary accelerated partial breast irradiation (APBI) has become a popular treatment for early stage breast cancer in recent years due to its shortened course of treatment and simplified treatment planning compared to traditional external beam breast conservation therapy. However, the exit dose to the ski...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.3429089

    authors: Raffi JA,Davis SD,Hammer CG,Micka JA,Kunugi KA,Musgrove JE,Winston JW Jr,Ricci-Ott TJ,DeWerd LA

    更新日期:2010-06-01 00:00:00

  • Transient noise characterization and filtration in CCD cameras exposed to stray radiation from a medical linear accelerator.

    abstract::Charge coupled devices (CCDs) are being increasingly used in radiation therapy for dosimetric purposes. However, CCDs are sensitive to stray radiation. This effect induces transient noise. Radiation-induced noise strongly alters the image and therefore limits its quantitative analysis. The purpose of this work is to c...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.2975147

    authors: Archambault L,Briere TM,Beddar S

    更新日期:2008-10-01 00:00:00

  • Computerized radiographic texture measures for characterizing bone strength: a simulated clinical setup using femoral neck specimens.

    abstract::We are investigating computerized methods to ultimately characterize bone trabecular pattern from clinical skeletal radiographs. In this paper, we present a "phantom" for potential use in the development and evaluation of computerized methods for characterizing radiographic trabecular patterns and ultimately bone stre...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.598743

    authors: Chinander MR,Giger ML,Martell JM,Jiang C,Favus MJ

    更新日期:1999-11-01 00:00:00

  • Development of a Monte Carlo multiple source model for inclusion in a dose calculation auditing tool.

    abstract:PURPOSE:The Imaging and Radiation Oncology Core Houston (IROC-H) (formerly the Radiological Physics Center) has reported varying levels of agreement in their anthropomorphic phantom audits. There is reason to believe one source of error in this observed disagreement is the accuracy of the dose calculation algorithms an...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.12426

    authors: Faught AM,Davidson SE,Fontenot J,Kry SF,Etzel C,Ibbott GS,Followill DS

    更新日期:2017-09-01 00:00:00

  • Breast tumor segmentation in 3D automatic breast ultrasound using Mask scoring R-CNN.

    abstract:PURPOSE:Automatic breast ultrasound (ABUS) imaging has become an essential tool in breast cancer diagnosis since it provides complementary information to other imaging modalities. Lesion segmentation on ABUS is a prerequisite step of breast cancer computer-aided diagnosis (CAD). This work aims to develop a deep learnin...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.14569

    authors: Lei Y,He X,Yao J,Wang T,Wang L,Li W,Curran WJ,Liu T,Xu D,Yang X

    更新日期:2020-10-30 00:00:00

  • Sci-Fri AM: Imaging - 05: Cone-beam computed tomography for breast biopsy analysis: Simulations.

    abstract:PURPOSE:To determine the feasibility and potential utility of cone beam CT on breast biopsies. METHODS:CBCT simulations were done with a setup which emulates an MX-20 digital specimen radiography system (Faxitron X-Ray Corporation, Chicago, IL), albeit a DQE = 1 was assumed. The phantom consisted of a 5mm diameter cyl...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4740191

    authors: Laamanen C,LeClair R

    更新日期:2012-07-01 00:00:00

  • Analysis and correction of imperfections in the image intensifier-TV-digitizer imaging chain.

    abstract::Image intensifier-television-video digitizer (IITVD) systems are commonly used for digital planar image acquisition in radiology. However, the well-known distortions inherent in these systems limit their utility in research and in some clinical applications where quantitatively correct images are required. Software co...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.596718

    authors: Boone JM,Seibert JA,Barrett WA,Blood EA

    更新日期:1991-03-01 00:00:00

  • Technical Note: Mobile accelerator guidance using an optical tracker during docking in IOERT procedures.

    abstract:PURPOSE:Intraoperative electron radiation therapy (IOERT) involves the delivery of a high radiation dose during tumor resection in a shorter time than other radiation techniques, thus improving local control of tumors. However, a linear accelerator device is needed to produce the beam safely. Mobile linear accelerators...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.12482

    authors: Marinetto E,Victores JG,García-Sevilla M,Muñoz M,Calvo FÁ,Balaguer C,Desco M,Pascau J

    更新日期:2017-10-01 00:00:00

  • Three dimensional intensity modulated brachytherapy (IMBT): dosimetry algorithm and inverse treatment planning.

    abstract:PURPOSE:The feasibility of intensity modulated brachytherapy (IMBT) to improve dose conformity for irregularly shaped targets has been previously investigated by researchers by means of using partially shielded sources. However, partial shielding does not fully explore the potential of IMBT. The goal of this study is t...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.3456598

    authors: Shi C,Guo B,Cheng CY,Esquivel C,Eng T,Papanikolaou N

    更新日期:2010-07-01 00:00:00

  • Water-equivalent dosimeter array for small-field external beam radiotherapy.

    abstract::With the increasing complexity of dose patterns external beam radiotherapy, there is a great need for new types of dosimeters. We studied the first prototype of a new dosimeter array consisting of water-equivalent plastic scintillating fibers for dose measurement in external beam radiotherapy. We found that this array...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.2719363

    authors: Archambault L,Beddar AS,Gingras L,Lacroix F,Roy R,Beaulieu L

    更新日期:2007-05-01 00:00:00

  • Comparison of an amorphous silicon/cesium iodide flat-panel digital chest radiography system with screen/film and computed radiography systems--a contrast-detail phantom study.

    abstract::Flat-panel (FP) based digital radiography systems have recently been introduced as a new and improved digital radiography technology; it is important to evaluate and compare this new technology with currently widely used conventional screen/film (SF) and computed radiography (CR) techniques. In this study, the low-con...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.1408620

    authors: Rong XJ,Shaw CC,Liu X,Lemacks MR,Thompson SK

    更新日期:2001-11-01 00:00:00

  • A novel curvilinear approach for prostate seed implantation.

    abstract:PURPOSE:A new technique called "curvilinear approach" for prostate seed implantation has been proposed. The purpose of this study is to evaluate the dosimetric benefit of curvilinear distribution of seeds for low-dose-rate (LDR) prostate brachytherapy. METHODS:Twenty LDR prostate brachytherapy cases planned intraopera...

    journal_title:Medical physics

    pub_type: 杂志文章,随机对照试验

    doi:10.1118/1.3694110

    authors: Podder TK,Dicker AP,Hutapea P,Darvish K,Yu Y

    更新日期:2012-04-01 00:00:00

  • A simple magnetic spectrometer for radiotherapy electron beams.

    abstract::A small, lightweight, single-focusing magnetic spectrometer was designed, assembled, and tested for analysis of electron beams from radiotherapy electron linacs. The objective was to develop a low cost, simple device that could be easily replicated in other medical centers, and to demonstrate the practicality of indiv...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.597271

    authors: Deasy JO,Almond PR,McEllistrem MT,Ross CK

    更新日期:1994-11-01 00:00:00

  • WE-G-211-02: Origins and Development of Magnetic Resonance Imaging.

    abstract::The method of magnetic resonance imaging (MRI) was an extension of nuclear magnetic resonance (NMR) spectroscopy that was enabled by computational systems capable of performing the Fast Fourier Transform. Initially, a diverse group of methods were proposed for producing images with NMR, with the multi-slice spin-warp ...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4736176

    authors: Clarke G

    更新日期:2012-06-01 00:00:00

  • Improved gradient-echo 3D magnetic resonance imaging using compressed sensing and Toeplitz encoding with phase-scrambled RF excitation.

    abstract:PURPOSE:To develop a novel three-dimensional (3D) hybrid-encoding framework using compressed sensing (CS) and Toeplitz encoding with variable phase-scrambled radio-frequency (RF) excitation, which has the following advantages: low power deposition of RF pulses, reduction of the signal dynamic range, no additional hardw...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.13987

    authors: Wang H,Liang D,Su S,King KF,Chang Y,Liu X,Zheng H,Ying L

    更新日期:2020-04-01 00:00:00

  • The potential role of positron emission mammography for detection of breast cancer. A phantom study.

    abstract::Positron emission mammography (PEM) is a new, specialized imaging modality utilizing PET radiopharmaceuticals to detect breast cancer. The capabilities and limitations of PEM in detecting breast tumors were investigated with a series of phantom experiments. The PEM imager was mounted on a standard Lorad biopsy table (...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.1287439

    authors: Raylman RR,Majewski S,Wojcik R,Weisenberger AG,Kross B,Popov V,Bishop HA

    更新日期:2000-08-01 00:00:00

  • Technical Note: Virtual phantom analyses for preprocessing evaluation and detection of a robust feature set for MRI-radiomics of the brain.

    abstract:PURPOSE:The purpose of the paper was to use a virtual phantom to identify a set of radiomic features from T1-weighted and T2-weighted magnetic resonance imaging (MRI) of the brain which is stable to variations in image acquisition parameters and to evaluate the effect of image preprocessing on radiomic features stabili...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.13834

    authors: Bologna M,Corino V,Mainardi L

    更新日期:2019-11-01 00:00:00

  • Evaluating the impact of extended field-of-view CT reconstructions on CT values and dosimetric accuracy for radiation therapy.

    abstract:PURPOSE:Wide bore CT scanners use extended field-of-view (eFOV) reconstruction algorithms to attempt to recreate tissue truncated due to large patient habitus. Radiation therapy planning systems rely on accurate CT numbers in order to correctly plan and calculate radiation dose. This study looks at the impact of eFOV r...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.13299

    authors: Cheung JP,Shugard E,Mistry N,Pouliot J,Chen J

    更新日期:2019-02-01 00:00:00

  • SU-E-J-142: Gafchromic Film Dosimetry in Fluoroscopy for Dynamic Tumor Tracking Irradiation of the Lung Using XR-SP2 Model - A Phantom Study.

    abstract:PURPOSE:We have recently developed a dynamic tumor tracking irradiation system using Vero4DRT (MHI-Tm2 000). It is needed to create a 4D correlation model between a fiducial marker implanted near a tumor and an external surrogate as a function of time by continuously acquiring both fluoroscopy images and external surro...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4734978

    authors: Shiinoki T,Sawada A,Ishihara Y,Miyabe Y,Fujimoto T,Nakai T,Matsuo Y,Mizowaki T,Kokubo M,Hiraoka M

    更新日期:2012-06-01 00:00:00

  • Tissue equivalence in clinical neutron dosimetry: comparison of dose distributions in nine tissue substitutes for a d(14)Be neutron beam.

    abstract::Depth dose distributions for a d(14)Be neutron beam, measured separately for total and gamma absorbed dose, are presented for nine tissue substitutes and for two field sizes. These data are used to examine methods to transform depth dose curves from one material to another. Best results are found when the local depths...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.595695

    authors: Hensley FW,Rassow J,Temme A

    更新日期:1985-05-01 00:00:00

  • Two-dimensional antiscatter grid: A novel scatter rejection device for Cone-beam computed tomography.

    abstract:PURPOSE:Scattered radiation remains to be a major cause of image quality degradation in Flat Panel Detector (FPD)-based Cone-beam computed tomography (CBCT). We have been investigating a novel two-dimensional antiscatter grid (2D-ASG) concept to reduce scatter intensity, and hence improve CBCT image quality. We present...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.12724

    authors: Alexeev T,Kavanagh B,Miften M,Altunbas C

    更新日期:2018-02-01 00:00:00

  • Prostatome: a combined anatomical and disease based MRI atlas of the prostate.

    abstract:PURPOSE:In this work, the authors introduce a novel framework, the anatomically constrained registration (AnCoR) scheme and apply it to create a fused anatomic-disease atlas of the prostate which the authors refer to as the prostatome. The prostatome combines a MRI based anatomic and a histology based disease atlas. St...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4881515

    authors: Rusu M,Bloch BN,Jaffe CC,Genega EM,Lenkinski RE,Rofsky NM,Feleppa E,Madabhushi A

    更新日期:2014-07-01 00:00:00

  • Physical characteristics of scattered radiation in diagnostic radiology: Monte Carlo simulation studies.

    abstract::We applied Monte Carlo methods for the simulation of x-ray scattering in water phantoms. The phantom thickness was varied from 5 to 20 cm, and the monoenergetic incident x rays were varied from 15 to 100 keV. Eight screen pairs and a total absorption system were used as x-ray receptors. We determined the angular, spec...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.595771

    authors: Chan HP,Doi K

    更新日期:1985-03-01 00:00:00

  • A Monte Carlo approach to validation of FFF VMAT treatment plans for the TrueBeam linac.

    abstract:PURPOSE:To commission and benchmark a vendor-supplied (Varian Medical Systems) Monte Carlo phase-space data for the 6 MV flattening filter free (FFF) energy mode on a TrueBeam linear accelerator for the purpose of quality assurance of clinical volumetric modulated arc therapy (VMAT) treatment plans. A method for render...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4773883

    authors: Gete E,Duzenli C,Milette MP,Mestrovic A,Hyde D,Bergman AM,Teke T

    更新日期:2013-02-01 00:00:00

  • SU-E-T-404: A Prototype Program for Analyzing 4D Image Guidance Shifts for Lung SBRT.

    abstract:PURPOSE:A prototype in-house program was developed to assist deriving image guidance shifts clinically using our 4DCT method for lung SBRT. METHODS:Our in-house prototype program was implemented in MATLAB. The 4D DICOM CT dataset of interest is imported by the program from AW and subsequently accepts input from the us...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4735493

    authors: Wang B,Sarkar V,Busselberg C,Rassiah-Szegedi P,Zhao H,Huang Y,Szegedi M,Salter B

    更新日期:2012-06-01 00:00:00

  • Use of capillary optics as a beam intensifier for a Compton x-ray source.

    abstract::The use of Kumakhov capillary optics will significantly enhance the performance of near-monochromatic, Compton backscattered x-ray programs. The Vanderbilt University Medical Free-Electron Laser Center is developing the capability to create these tunable x rays for medical imaging. The present transport has only refle...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.597218

    authors: Tompkins PA,Abreu CC,Carroll FE,Xiao QF,MacDonald CA

    更新日期:1994-11-01 00:00:00