Stereoselective Formation of Multiple Reaction Products by the Phosphotriesterase from Sphingobium sp. TCM1.

Abstract:

:Organophosphate flame retardants are used to inhibit combustion and increase plasticity in plastics and durable foams. While not neurotoxic, these compounds are potential carcinogens, endocrine disrupters, and developmental toxins. The phosphotriesterase from Sphingobium sp. TCM1 (Sb-PTE) is unique among phosphotriesterase enzymes for its ability to hydrolyze these compounds and its ability to hydrolyze any one of the three different ester bonds within a given substrate. In some cases, the extent of hydrolysis of a methyl ester exceeds that of a p-nitrophenyl ester within a single substrate. There is a stereochemical component to this hydrolysis where the two enantiomers of chiral substrates give different product ratios. To investigate the stereoselectivity for the product distribution of Sb-PTE, a series of 24 phosphotriesters were synthesized with all possible combinations of methyl, cyclohexyl, phenyl, and p-nitrophenyl esters. Prochiral compounds were made chiral by differential isotopic labeling using a chemo/enzymatic strategy, which allowed the differentiation of hydrolysis for each ester in all but two compounds. The rate equations for this unique enzymatic mechanism were derived; the product ratios were determined for each substrate, and the individual kinetic constants for hydrolysis of each ester within each substrate were measured. The findings are consistent with the rate-limiting step for substrate hydrolysis catalyzed by Sb-PTE being the formation of a phosphorane-like intermediate and the kinetic constants and product ratios being dictated by a combination of transition state energies, inductive effects, and stereochemical constraints.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Bigley AN,Narindoshvili T,Xiang DF,Raushel FM

doi

10.1021/acs.biochem.0c00089

subject

Has Abstract

pub_date

2020-03-31 00:00:00

pages

1273-1288

issue

12

eissn

0006-2960

issn

1520-4995

journal_volume

59

pub_type

杂志文章
  • Reversible self-association of bovine growth hormone during equilibrium unfolding.

    abstract::Previous investigations have shown that bovine growth hormone (bGH, somatotropin) unfolds through a reversible multistate process with at least one stable equilibrium intermediate. In extending our knowledge of the folding process for bGH, we demonstrate that a self-associated form of partially denatured bGH is formed...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00369a029

    authors: Havel HA,Kauffman EW,Plaisted SM,Brems DN

    更新日期:1986-10-21 00:00:00

  • Double-strand break formation during nucleotide excision repair of a DNA interstrand cross-link.

    abstract::The DNA interstrand cross-link (ICL) resulting from the C4'-oxidized abasic site (C4-AP) is a unique clustered lesion comprised of a cross-link adjacent to a nick. The ICL is a substrate for the UvrABC nucleotide excision repair system. The strand containing the nick is preferentially incised, but the nick influences ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901006b

    authors: Sczepanski JT,Jacobs AC,Van Houten B,Greenberg MM

    更新日期:2009-08-18 00:00:00

  • Determination of Fe-CO geometry in the subunits of carbonmonoxy hemoglobin M Boston using femtosecond infrared spectroscopy.

    abstract::We have undertaken ultrafast infrared (IR) spectroscopic studies in order to elucidate the geometry of bound CO in the alpha and beta subunits of hemoglobin (Hb) M Boston 13CO. Hb M Boston is a mutant human Hb in which the distal histidine in the alpha subunits is replaced by a tyrosine. The IR absorptions of bound 13...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00073a013

    authors: Lian T,Locke B,Kitagawa T,Nagai M,Hochstrasser RM

    更新日期:1993-06-08 00:00:00

  • CYP4 isozyme specificity and the relationship between omega-hydroxylation and terminal desaturation of valproic acid.

    abstract::The cytochrome P450-dependent terminal desaturation of valproic acid (VPA) is of both toxicological and mechanistic interest because the product, 4-ene-VPA, is a more potent hepatotoxin than the parent compound and its generation represents a rather novel metabolic reaction for the cytochrome P450 system. In the prese...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00024a013

    authors: Rettie AE,Sheffels PR,Korzekwa KR,Gonzalez FJ,Philpot RM,Baillie TA

    更新日期:1995-06-20 00:00:00

  • Conformational properties of B-Z junctions in DNA.

    abstract::The structural consequences of specific base sequences in DNA can exert a strong influence on the function of DNA. It has previously been reported that the presence of multiple B-Z conformational junctions in constructed DNA oligomers results in unusually enhanced electrophoretic gel mobilities of these oligomers [Win...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00134a026

    authors: Lu M,Guo Q,Kallenbach NR,Sheardy RD

    更新日期:1992-05-19 00:00:00

  • Topological disposition of lysine 943 in native Na+/K(+)-transporting ATPase.

    abstract::Because of the conflicting conclusions that have been reached regarding the location of the two putative membrane-spanning segments from cysteine 911 through isoleucine 929 and from isoleucine 946 through cysteine 964 in the alpha subunit of native ovine Na+/K(+)-transporting ATPase, the disposition of lysine 943 with...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00029a027

    authors: Anderberg SJ

    更新日期:1995-07-25 00:00:00

  • The SIV tilted peptide induces cylindrical reverse micelles in supported lipid bilayers.

    abstract::Elucidation of the molecular mechanism leading to biomembrane fusion is a challenging issue in current biomedical research in view of its involvement in controlling cellular functions and in mediating various important diseases. According to the generally admitted stalk mechanism described for membrane fusion, negativ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060317x

    authors: El Kirat K,Dufrêne YF,Lins L,Brasseur R

    更新日期:2006-08-01 00:00:00

  • Solution structure of a band 3 peptide inhibitor bound to aldolase: a proposed mechanism for regulating binding by tyrosine phosphorylation.

    abstract::Human erythrocyte band 3 inhibits glycolytic enzymes, including aldolase, by binding these cytoplasmic enzymes at its N-terminus. Phosphorylation of Y8 disrupts inhibition, and there is evidence that in vivo glycolysis levels in erythrocytes are regulated in part by a phosphorylation/dephosphorylation signaling pathwa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00051a005

    authors: Schneider ML,Post CB

    更新日期:1995-12-26 00:00:00

  • Characterization of hemopexin and its interaction with heme by differential scanning calorimetry and circular dichroism.

    abstract::Hemopexin is a plasma glycoprotein that has two structural domains (I and II) and binds and transports heme particularly to liver cells. Differential scanning calorimetry (DSC) studies show that hemopexin is largely stabilized by heme, which binds exclusively to domain I. The melting temperature (Tm) of heme-hemopexin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00079a018

    authors: Wu ML,Morgan WT

    更新日期:1993-07-20 00:00:00

  • Enhancement, relaxation, and reversal of the stereoselectivity for phosphotriesterase by rational evolution of active site residues.

    abstract::The factors that govern the substrate reactivity and stereoselectivity of phosphotriesterase (PTE) toward organophosphotriesters containing various combinations of methyl, ethyl, isopropyl, and phenyl substituents at the phosphorus center were determined by systematic alterations in the dimensions of the active site. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001549d

    authors: Chen-Goodspeed M,Sogorb MA,Wu F,Raushel FM

    更新日期:2001-02-06 00:00:00

  • Circular substrates of the hammerhead ribozyme shift the internal equilibrium further toward cleavage.

    abstract::To test whether the Y-shaped conformation of the hammerhead ribozyme is maintained throughout the catalytic pathway, the cleavage properties of circular substrates which bind the ribozyme through helices I and II were determined. Constraining the position of helices I and II in this manner did not significantly alter ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980307z

    authors: Stage-Zimmermann TK,Uhlenbeck OC

    更新日期:1998-06-30 00:00:00

  • Electron-transfer reactions in manganese-depleted photosystem II.

    abstract::We have used flash-detection optical and electron paramagnetic resonance spectroscopy to measure the kinetics and yield per flash of the photooxidation of cytochrome b559 and the yield per flash of the photooxidation of the tyrosine residue YD in Mn-depleted photosystem II (PSII) membranes at room temperature. The ini...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00490a014

    authors: Buser CA,Thompson LK,Diner BA,Brudvig GW

    更新日期:1990-09-25 00:00:00

  • Characterization of synthetic human granulocyte chemotactic protein 2: usage of chemokine receptors CXCR1 and CXCR2 and in vivo inflammatory properties.

    abstract::Human granulocyte chemotactic protein 2 (GCP-2) has originally been isolated from cytokine-stimulated osteosarcoma cells as a chemokine coproduced in minute amounts together with interleukin 8. Human GCP-2 (75 residues) was synthesized on a 0.25-mmol scale using Fmoc chemistry. After disulfide bridge formation and pur...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961999z

    authors: Wuyts A,Van Osselaer N,Haelens A,Samson I,Herdewijn P,Ben-Baruch A,Oppenheim JJ,Proost P,Van Damme J

    更新日期:1997-03-04 00:00:00

  • Cooperativity in oxidations catalyzed by cytochrome P450 3A4.

    abstract::Cytochrome P450 (P450) 3A4 is the most abundant human P450 and oxidizes a diversity of substrates, including various drugs, steroids, carcinogens, and macrolide natural products. In some reactions, positive cooperativity has been reported in microsomal studies. Flavonoids, e.g., 7,8-benzoflavone (alpha-naphthoflavone,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962359z

    authors: Ueng YF,Kuwabara T,Chun YJ,Guengerich FP

    更新日期:1997-01-14 00:00:00

  • Fusion of influenza hemagglutinin-expressing fibroblasts with glycophorin-bearing liposomes: role of hemagglutinin surface density.

    abstract::Influenza virus gains access to the cytoplasm of its host cell by means of a fusion event between viral and host cell membrane. Fusion is mediated by the envelope glycoprotein hemagglutinin (HA) and is triggered by low pH. To learn how many hemagglutinin trimers are necessary to cause membrane fusion, we have used two...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00493a027

    authors: Ellens H,Bentz J,Mason D,Zhang F,White JM

    更新日期:1990-10-16 00:00:00

  • Nucleosome Histone Tail Conformation and Dynamics: Impacts of Lysine Acetylation and a Nearby Minor Groove Benzo[a]pyrene-Derived Lesion.

    abstract::Histone tails in nucleosomes play critical roles in regulation of many biological processes, including chromatin compaction, transcription, and DNA repair. Moreover, post-translational modifications, notably lysine acetylation, are crucial to these functions. While the tails have been intensively studied, how the stru...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01208

    authors: Fu I,Cai Y,Geacintov NE,Zhang Y,Broyde S

    更新日期:2017-04-11 00:00:00

  • Kinetic and structural analysis of substrate specificity in two copper amine oxidases from Hansenula polymorpha.

    abstract::The structural underpinnings of enzyme substrate specificity are investigated in a pair of copper amine oxidases (CAOs) from Hansenula polymorpha (HPAO-1 and HPAO-2). The X-ray crystal structure (to 2.0 A resolution) and steady state kinetic data of the second copper amine oxidase (HPAO-2) are presented for comparison...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901933d

    authors: Chang CM,Klema VJ,Johnson BJ,Mure M,Klinman JP,Wilmot CM

    更新日期:2010-03-23 00:00:00

  • Structural determinants of HscA peptide-binding specificity.

    abstract::The Hsp70-class molecular chaperone HscA interacts specifically with a conserved (99)LPPVK(103) motif of the iron-sulfur cluster scaffold protein IscU. We used a cellulose-bound peptide array to perform single-site saturation substitution of peptide residues corresponding to Glu(98)-Ile(104) of IscU to determine posit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0606187

    authors: Tapley TL,Cupp-Vickery JR,Vickery LE

    更新日期:2006-07-04 00:00:00

  • Stopped-flow analyses on the reaction of ascorbate with cytochrome b561 purified from bovine chromaffin vesicle membranes.

    abstract::Cytochrome b(561) in adrenal chromaffin vesicle membranes conveys electron equivalents from extravesicular ascorbate to the intravesicular monodehydroascorbate radical. We conducted a stopped-flow study on the reaction of ascorbate with purified cytochrome b(561) in the detergent-solubilized state for the first time. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0267588

    authors: Takigami T,Takeuchi F,Nakagawa M,Hase T,Tsubaki M

    更新日期:2003-07-15 00:00:00

  • Structural Snapshots of an Engineered Cystathionine-γ-lyase Reveal the Critical Role of Electrostatic Interactions in the Active Site.

    abstract::Enzyme therapeutics that can degrade l-methionine (l-Met) are of great interest as numerous malignancies are exquisitely sensitive to l-Met depletion. To exhaust the pool of methionine in human serum, we previously engineered an l-Met-degrading enzyme based on the human cystathionine-γ-lyase scaffold (hCGL-NLV) to cir...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01172

    authors: Yan W,Stone E,Zhang YJ

    更新日期:2017-02-14 00:00:00

  • A β-Turn Motif in the Steroid Hormone Receptor's Ligand-Binding Domains Interacts with the Peptidyl-prolyl Isomerase (PPIase) Catalytic Site of the Immunophilin FKBP52.

    abstract::The immunophilin FKBP52 interacts with nuclear steroid hormone receptors. Studying the crystal structure of human estrogen receptor α (hERα) and using nuclear magnetic resonance, we show here that the short V(364)PGF(367) sequence, which is located within its ligand-binding domain and adopts a type II β-turn conformat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00506

    authors: Byrne C,Henen MA,Belnou M,Cantrelle FX,Kamah A,Qi H,Giustiniani J,Chambraud B,Baulieu EE,Lippens G,Landrieu I,Jacquot Y

    更新日期:2016-09-27 00:00:00

  • Two-step internalization of Ca2+ from a single E approximately P.Ca2 species by the Ca2+-ATPase.

    abstract::Phosphorylation by ATP of E.*Ca2 (sarcoplasmic reticulum vesicles (SRV) with bound 45Ca2+) during 5-10 ms leads to the occlusion of 2 *Ca2+/EPtot [quench by ethylene glycol bis(beta-aminoethyl ether)-N,N,N',N'-tetraacetic acid (EGTA) alone] in both "empty" (10 microM free Ca2+in) or "loaded" SRV (20-40 mM free Ca2+in)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00408a041

    authors: Khananshvili D,Jencks WP

    更新日期:1988-04-19 00:00:00

  • Structural studies of acetylated and control inner core histones.

    abstract::The role of acetylation on the conformation and association state of the inner core histone octamer isolated from HeLa cells was examined. Preparation of suitable quantities of pure acetylated and control inner core histones from HeLa cells required the development of a new preparative procedure. The results from size...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00384a041

    authors: Prevelige PE Jr,Fasman GD

    更新日期:1987-05-19 00:00:00

  • Mechanism Underlying Anti-Markovnikov Addition in the Reaction of Pentalenene Synthase.

    abstract::Most terpene synthase reactions follow Markovnikov rules for formation of high-energy carbenium ion intermediates. However, there are notable exceptions. For example, pentalenene synthase (PS) undergoes an initial anti-Markovnikov cyclization reaction followed by a 1,2-hydride shift to form an intermediate humulyl cat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00518

    authors: Matos JO,Kumar RP,Ma AC,Patterson M,Krauss IJ,Oprian DD

    更新日期:2020-09-08 00:00:00

  • Introduction of purified hexosaminidase A into Tay-Sachs leukocytes by means of immunoglobulin-coated liposomes.

    abstract::To determine whether ligand-receptor interactions could engender the selective uptake by deficient cells of enzyme-laden liposomes, aggregated human IgG was used to coat liposomes which had previously trapped purified hexosaminidase A (Hex A). By a new, high-yield procedure, Hex A was purified 7000-fold from human pla...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00647a034

    authors: Cohen CM,Weissmann G,Hoffstein S,Awasthi YC,Srivastava SK

    更新日期:1976-01-27 00:00:00

  • Thermodynamics of ferredoxin binding to ferredoxin:NADP+ reductase and the role of water at the complex interface.

    abstract::The association of ferredoxin with ferredoxin:NADP+ reductase (both proteins from spinach chloroplasts) was characterized by isothermal titration calorimetry and fluorescence quenching titration. The formation of the complex is mainly driven by a positive entropy change (delta S = 125 +/- 8 J mol-1 K-1). The calorimet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00249a019

    authors: Jelesarov I,Bosshard HR

    更新日期:1994-11-15 00:00:00

  • [FeFe]-hydrogenase maturation.

    abstract::Hydrogenases are metalloenzymes that catalyze the reversible reduction of protons at unusual metal centers. This Current Topic discusses recent advances in elucidating the steps involved in the biosynthesis of the complex metal cluster at the [FeFe]-hydrogenase (HydA) active site, known as the H-cluster. The H-cluster...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500210x

    authors: Shepard EM,Mus F,Betz JN,Byer AS,Duffus BR,Peters JW,Broderick JB

    更新日期:2014-07-01 00:00:00

  • Investigating Pharmacological Targeting of G-Quadruplexes in the Human Malaria Parasite.

    abstract::The unique occurrence of G-quadruplexes in the AT-rich genome of human malaria parasite Plasmodium falciparum provides hints about their critical roles in parasite survival, pathogenesis, and host immune evasion. An intriguing question is whether these noncanonical structures can serve as molecular targets for small m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00964

    authors: Anas M,Sharma R,Dhamodharan V,Pradeepkumar PI,Manhas A,Srivastava K,Ahmed S,Kumar N

    更新日期:2017-12-26 00:00:00

  • Ionization of zwitterionic amine substrates bound to monomeric sarcosine oxidase.

    abstract::Monomeric sarcosine oxidase (MSOX) binds the L-proline zwitterion (pKa = 10.6). The reactive substrate anion is generated by ionization of the ES complex (pKa = 8.0). Tyr317 was mutated to Phe to determine whether this step might involve proton transfer to an active site base. The mutation does not eliminate the ioniz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051898d

    authors: Zhao G,Jorns MS

    更新日期:2005-12-27 00:00:00

  • Identification of hydrophobic amino acid residues involved in the formation of S100P homodimers in vivo.

    abstract::S100 proteins are small dimeric members of the EF-hand superfamily of Ca(2+) binding proteins thought to participate in mediating intracellular Ca(2+) signals by binding to and thereby regulating target proteins in a Ca(2+)-dependent manner. As dimer formation is crucial to S100 function, we applied a yeast two-hybrid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000257+

    authors: Koltzscher M,Gerke V

    更新日期:2000-08-08 00:00:00