Structural requirements for trans activation of human immunodeficiency virus type 1 long terminal repeat-directed gene expression by tat: importance of base pairing, loop sequence, and bulges in the tat-responsive sequence.

Abstract:

:In order to elucidate the molecular mechanisms of action of the tat-responsive sequence, mutational analysis of the tat-responsive sequence was carried out. The most critical region comprised nucleotides +18 to +44 and included the 3-nucleotide bulge at positions +23 to +25, the loop sequence, and an intact stem. In addition, base pairing up to nucleotide +52 was required for the full magnitude of the trans-activation response. Single-nucleotide bulges at positions +5 to +17 were dispensable. Analysis of truncated and full-length transcripts demonstrated that a transcriptional antitermination model does not fully account for trans activation.

journal_name

J Virol

journal_title

Journal of virology

authors

Roy S,Parkin NT,Rosen C,Itovitch J,Sonenberg N

doi

10.1128/JVI.64.3.1402-1406.1990

subject

Has Abstract

pub_date

1990-03-01 00:00:00

pages

1402-6

issue

3

eissn

0022-538X

issn

1098-5514

journal_volume

64

pub_type

杂志文章
  • A novel membrane protein is a mouse mammary tumor virus receptor.

    abstract::Mouse mammary tumor virus (MMTV) infects a number of different cell types, including mammary gland and lymphoid cells, in vivo. To identify the cellular receptor for this virus, a mouse cDNA expression library was transfected into Cos-7 monkey kidney cells, and those transfected cells able to bind virus were selected ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.4.3066-3071.1998

    authors: Golovkina TV,Dzuris J,van den Hoogen B,Jaffe AB,Wright PC,Cofer SM,Ross SR

    更新日期:1998-04-01 00:00:00

  • Interaction of JC virus agno protein with T antigen modulates transcription and replication of the viral genome in glial cells.

    abstract::In addition to encoding the structural and regulatory proteins, many viruses encode auxiliary proteins, some of which have been shown to play important roles in lytic and latent states of the viruses. The human neurotropic JC virus (JCV) genome encodes an auxiliary protein called Agno whose function remains unknown. H...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.3.1476-1486.2001

    authors: Safak M,Barrucco R,Darbinyan A,Okada Y,Nagashima K,Khalili K

    更新日期:2001-02-01 00:00:00

  • Characterization of the myristylated polypeptide encoded by the UL1 gene that is conserved in the genome of defective interfering particles of equine herpesvirus 1.

    abstract::Equine herpesvirus 1 (EHV-1, Kentucky A strain) preparations enriched for defective interfering particles (DIPs) can readily establish persistent infection. The UL1 gene, which is conserved in the genome of DIPs that mediate persistent infection, maps between nucleotides 1418 and 2192 (258 amino acids) from the L (lon...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.7.4122-4132.1993

    authors: Harty RN,Caughman GB,Holden VR,O'Callaghan DJ

    更新日期:1993-07-01 00:00:00

  • Transcriptional activation of the vascular cell adhesion molecule-1 gene in T lymphocytes expressing human T-cell leukemia virus type 1 Tax protein.

    abstract::Recruitment and extravasation of T cells through the blood-brain barrier are favored by adhesion molecule-mediated interactions of circulating T cells with endothelial cells. Since a common pathological finding in human T-cell leukemia virus type 1 (HTLV-1)-associated diseases is the infiltration of HTLV-1-infected T ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.11.8522-8530.1997

    authors: Valentin H,Lemasson I,Hamaia S,Cassé H,König S,Devaux C,Gazzolo L

    更新日期:1997-11-01 00:00:00

  • Emergence of CD4 independence envelopes and astrocyte infection in R5 simian-human immunodeficiency virus model of encephalitis.

    abstract:UNLABELLED:Human immunodeficiency virus type 1 (HIV-1) infection in the central nervous system (CNS) is characterized by replication in macrophages or brain microglia that express low levels of the CD4 receptor and is the cause of HIV-associated dementia and related cognitive and motor disorders that affect 20 to 30% o...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01237-14

    authors: Zhuang K,Leda AR,Tsai L,Knight H,Harbison C,Gettie A,Blanchard J,Westmoreland S,Cheng-Mayer C

    更新日期:2014-08-01 00:00:00

  • RNase activity in human interferon preparations.

    abstract::The level of RNase activity in human interferon preparations was examined. Although sequential purification of interferon resulted in nearly a 300-fold increase in specific activity, RNase-specific activity remained more or less constant. The implications of this finding for the analyses of the mode of action of inter...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.21.3.1247-1248.1977

    authors: Winchurch RA,Karpetsky TP,Levy CC,Cantell K

    更新日期:1977-03-01 00:00:00

  • Antibody-forming cell response to virus challenge in mice immunized with DNA encoding the influenza virus hemagglutinin.

    abstract::Immunization of mice with DNA encoding the influenza virus hemagglutinin (HA) affords complete protection against lethal influenza virus infection and the means to investigate the mechanisms of B-cell responsiveness to virus challenge. Using a single-cell enzyme-linked immunospot assay, we sought to determine the loca...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.12.7712-7717.1995

    authors: Justewicz DM,Morin MJ,Robinson HL,Webster RG

    更新日期:1995-12-01 00:00:00

  • Syncytium formation by recombinant vaccinia viruses carrying bovine parainfluenza 3 virus envelope protein genes.

    abstract::The highly syncytium-inducing M strain and the weakly syncytium-inducing SC strain of bovine parainfluenza 3 virus differ by a single amino acid substitution in each of the hemagglutinin-neuraminidase (HN) and membrane (M) proteins, while their fusion (F) proteins are identical (T. Shioda, S. Wakao, S. Suzu, and H. Sh...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.9.3661-3668.1989

    authors: Sakai Y,Shibuta H

    更新日期:1989-09-01 00:00:00

  • Translation is not required To generate virion precursor RNA in human immunodeficiency virus type 1-infected T cells.

    abstract::The retroviral primary transcription product is a multifunctional RNA that is utilized as pre-mRNA, mRNA, and genomic RNA. The relationship between human immunodeficiency virus type 1 (HIV-1) unspliced transcripts used as mRNA for viral protein synthesis and as virion precursor RNA (vpRNA) for encapsidation remains an...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.24.11531-11537.2000

    authors: Butsch M,Boris-Lawrie K

    更新日期:2000-12-01 00:00:00

  • The adenovirus tripartite leader may eliminate the requirement for cap-binding protein complex during translation initiation.

    abstract::The adenovirus tripartite leader is a 200-nucleotide 5' noncoding region that is found on all late viral mRNAs. This segment is required for preferential translation of viral mRNAs at late times during infection. Most tripartite leader-containing mRNAs appear to exhibit little if any requirement for intact cap-binding...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.6.2059-2066.1988

    authors: Dolph PJ,Racaniello V,Villamarin A,Palladino F,Schneider RJ

    更新日期:1988-06-01 00:00:00

  • Cell fusion activity of hepatitis C virus envelope proteins.

    abstract::To examine the cell fusion activity of hepatitis C virus (HCV) envelope proteins (E1 and E2), we have established a sensitive cell fusion assay based on the activation of a reporter gene as described previously (O. Nussbaum, C. C. Broder, and E. A. Berger, J. Virol. 68:5411-5422, 1994). The chimeric HCV E1 and E2 prot...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.11.5066-5074.2000

    authors: Takikawa S,Ishii K,Aizaki H,Suzuki T,Asakura H,Matsuura Y,Miyamura T

    更新日期:2000-06-01 00:00:00

  • Human papillomavirus type 11 recombinant L1 capsomeres induce virus-neutralizing antibodies.

    abstract::The human papillomavirus type 11 (HPV-11) L1 major capsid protein can be trypsinized to generate recombinant capsomeres that retain HPV genotype-restricted capsid antigenicity (M. Li, T. P. Cripe, P. A. Estes, M. K. Lyon, R. C. Rose, and R. L. Garcea, J. Virol. 71:2988-2995, 1997). In the present study, HPV-11 virion-...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.7.6151-6154.1998

    authors: Rose RC,White WI,Li M,Suzich JA,Lane C,Garcea RL

    更新日期:1998-07-01 00:00:00

  • The domains of glycoprotein D required to block apoptosis induced by herpes simplex virus 1 are largely distinct from those involved in cell-cell fusion and binding to nectin1.

    abstract::Glycoprotein D (gD) interacts with two alternative protein receptors, nectin1 and HveA, to mediate herpes simplex virus (HSV) entry into cells. Fusion of the envelope with the plasma membrane requires, in addition to gD, glycoproteins gB, gH, and gL. Coexpression of the four glycoproteins (gD, gB, gH, and gL) promotes...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.6.3759-3767.2003

    authors: Zhou G,Avitabile E,Campadelli-Fiume G,Roizman B

    更新日期:2003-03-01 00:00:00

  • Alternative promoters in the development of bacteriophage plasmid P4.

    abstract::Infection of Escherichia coli with the satellite virus P4 without its helper bacteriophage P2 leads either to the immune integrated state or to the nonimmune multicopy plasmid condition. We analyzed the transcription pattern of the phage plasmid P4 early and late after infection and during the stable plasmid or lysoge...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.5.1697-1704.1988

    authors: Dehó G,Zangrossi S,Ghisotti D,Sironi G

    更新日期:1988-05-01 00:00:00

  • Human papillomavirus types 16, 31, and 58 use different endocytosis pathways to enter cells.

    abstract::The early steps of the intracellular trafficking of human papillomavirus type 16 (HPV-16), -31, and -58 pseudovirions were studied by investigating the effects of drugs acting at defined points of endocytosis pathways on virus-like particle-mediated pseudoinfection by overexpression of a dominant-negative form of the ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.6.3846-3850.2003

    authors: Bousarghin L,Touzé A,Sizaret PY,Coursaget P

    更新日期:2003-03-01 00:00:00

  • In vivo conversion of the single-stranded DNA of the kilham rat virus to a double-stranded form.

    abstract::Kilham rat virus (KRV) contains linear, single-stranded DNA in the virion. The fate of radioactive viral DNA was followed after infection of monolayer cells. Within 60 min after infection of cells, 28 to 42% of the parental viral DNA is converted to a new form. This new DNA form is believed to be double stranded and l...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.11.2.299-305.1973

    authors: Salzman LA,White W

    更新日期:1973-02-01 00:00:00

  • Serum- and calcium-induced differentiation of human keratinocytes is inhibited by the E6 oncoprotein of human papillomavirus type 16.

    abstract::Transfection of the E6 and E7 genes of the high-risk human papillomaviruses (HPVs) into primary genital keratinocytes generates colonies of proliferating cells which are resistant to calcium- and serum-induced terminal differentiation. To genetically map the HPV gene(s) responsible for this cellular phenotype, we clon...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.5.3269-3279.1996

    authors: Sherman L,Schlegel R

    更新日期:1996-05-01 00:00:00

  • Association of the caveola vesicular system with cellular entry by filoviruses.

    abstract::The filoviruses Ebola Zaire virus and Marburg virus are believed to infect target cells through endocytic vesicles, but the details of this pathway are unknown. We used a pseudotyping strategy to investigate the cell biology of filovirus entry. We observed that specific inhibitors of the caveola system, including chol...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.10.5266-5270.2002

    authors: Empig CJ,Goldsmith MA

    更新日期:2002-05-01 00:00:00

  • Reovirus variants selected during persistent infections of L cells contain mutations in the viral S1 and S4 genes and are altered in viral disassembly.

    abstract::Reoviruses isolated from persistently infected cultures (PI viruses) can grow in the presence of ammonium chloride, a weak base that blocks acid-dependent proteolysis of viral outer-capsid proteins during viral entry into cells. We used reassortant viruses isolated from crosses of wild-type (wt) reovirus strain, type ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.2.1362-1369.1997

    authors: Wetzel JD,Wilson GJ,Baer GS,Dunnigan LR,Wright JP,Tang DS,Dermody TS

    更新日期:1997-02-01 00:00:00

  • Molecular signatures associated with Mx1-mediated resistance to highly pathogenic influenza virus infection: mechanisms of survival.

    abstract::Understanding the role of host factors during lethal influenza virus infection is critical to deciphering the events that determine the fate of the host. One such factor is encoded by the Mx1 gene, which confers resistance to influenza virus infection. Here, we compared pathology and global gene expression profiles in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.06156-11

    authors: Cilloniz C,Pantin-Jackwood MJ,Ni C,Carter VS,Korth MJ,Swayne DE,Tumpey TM,Katze MG

    更新日期:2012-03-01 00:00:00

  • Functional analysis of cis- and trans-acting replication factors of porcine circovirus type 1.

    abstract::The replication proteins Rep and Rep' of porcine circovirus type 1 (PCV1) are both capable of introducing and resealing strand discontinuities at the viral origin of DNA replication in vitro underlying genome amplification by rolling-circle replication. The PCV1 origin of replication encompasses the minimal binding si...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02420-06

    authors: Steinfeldt T,Finsterbusch T,Mankertz A

    更新日期:2007-06-01 00:00:00

  • Errant processing and structural alterations of genomes present in a varicella-zoster virus vaccine.

    abstract::Five minority populations of aberrant, varicella-zoster virus (VZV)-derived genomes were identified among the encapsidated DNAs obtained from the nuclear and cytoplasmic fractions of an in vitro infection initiated with a lyophilized sample of the BIKEN VZV vaccine (strain Oka). These were (i) VZV genomes, present wit...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.56.1.92-101.1985

    authors: Vlazny DA,Hyman RW

    更新日期:1985-10-01 00:00:00

  • Alpha interferon induces distinct translational control programs to suppress hepatitis C virus RNA replication.

    abstract::Hepatitis C virus (HCV) infection is treated with interferon (IFN)-based therapy. The mechanisms by which IFN suppresses HCV replication are not known, and only limited efficacy is achieved with therapy because the virus directs mechanisms to resist the host IFN response. In the present study we characterized the effe...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.7.3898-3912.2003

    authors: Wang C,Pflugheber J,Sumpter R Jr,Sodora DL,Hui D,Sen GC,Gale M Jr

    更新日期:2003-04-01 00:00:00

  • Characterization of the translational defect to fiber synthesis in monkey cells abortively infected with human adenovirus: role of ancillary leaders.

    abstract::Synthesis of the fiber protein of human adenovirus serotype 2 (Ad2) is 100-fold lower in abortively infected monkey cells, compared with productive infections, despite only a 5- to 10-fold reduction in fiber mRNA levels. Previously Anderson and Klessig (Proc. Natl. Acad Sci. USA 81:4023-4027, 1984) demonstrated a dire...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.10.4376-4385.1989

    authors: Silverman L,Klessig DF

    更新日期:1989-10-01 00:00:00

  • BHRF1 of Epstein-Barr virus, which is homologous to human proto-oncogene bcl2, is not essential for transformation of B cells or for virus replication in vitro.

    abstract::The Epstein-Barr virus (EBV) genome contains an open reading frame, BHRF1, that encodes a presumptive membrane protein with sequence similarity to the proto-oncogene bcl2, which is linked to human B-cell follicular lymphoma. Potential roles for BHRF1 in EBV's ability to growth transform human B cells and to replicate ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.4.1899-1906.1992

    authors: Lee MA,Yates JL

    更新日期:1992-04-01 00:00:00

  • A Novel Approach To Display Structural Proteins of Hepatitis C Virus Quasispecies in Patients Reveals a Key Role of E2 HVR1 in Viral Evolution.

    abstract::Hepatitis C virus (HCV) infection remains a major worldwide health problem despite development of highly effective direct-acting antivirals. HCV rapidly evolves upon acute infection and generates multiple viral variants (quasispecies), leading to immune evasion and persistent viral infection. Identification of epitope...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00622-20

    authors: Tong Y,Li Q,Li R,Xu Y,Pan Y,Niu J,Zhong J

    更新日期:2020-08-17 00:00:00

  • Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitness.

    abstract::Genetic bottlenecks are important events in the genetic diversification of organisms and colonization of new ecological niches. Repeated bottlenecking of RNA viruses often leads to fitness losses due to the operation of Muller's ratchet. Herein we use vesicular stomatitis virus to determine the transmission population...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.5.2869-2872.1995

    authors: Novella IS,Elena SF,Moya A,Domingo E,Holland JJ

    更新日期:1995-05-01 00:00:00

  • Hyperphosphorylation of mutant influenza virus matrix protein, M1, causes its retention in the nucleus.

    abstract::The matrix (M1) protein of influenza virus is a major structural component, involved in regulation of viral ribonucleoprotein transport into and out of the nucleus. Early in infection, M1 is distributed in the nucleus, whereas later, it is localized predominantly in the cytoplasm. Using immunofluorescence microscopy a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.1.439-445.1995

    authors: Whittaker G,Kemler I,Helenius A

    更新日期:1995-01-01 00:00:00

  • Estimation of the initial viral growth rate and basic reproductive number during acute HIV-1 infection.

    abstract::During primary infection, the number of HIV-1 particles in plasma increases rapidly, reaches a peak, and then declines until it reaches a set point level. Understanding the kinetics of primary infection, and its effect on the establishment of chronic infection, is important in defining the early pathogenesis of HIV. W...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00127-10

    authors: Ribeiro RM,Qin L,Chavez LL,Li D,Self SG,Perelson AS

    更新日期:2010-06-01 00:00:00

  • Integrating adenovirus-adeno-associated virus hybrid vectors devoid of all viral genes.

    abstract::Recently, we demonstrated that inverted repeat sequences inserted into first-generation adenovirus (Ad) vector genomes mediate precise genomic rearrangements resulting in vector genomes devoid of all viral genes that are efficiently packaged into functional Ad capsids. As a specific application of this finding, we gen...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.11.9314-9324.1999

    authors: Lieber A,Steinwaerder DS,Carlson CA,Kay MA

    更新日期:1999-11-01 00:00:00