Abstract:
:Understanding the evolutionary consequences of human-mediated introductions of domesticated strains into the wild and their subsequent admixture with natural populations is of major concern in conservation biology. However, the genomic impacts of stocking from distinct sources (locally derived vs. divergent) on the genetic integrity of wild populations remain poorly understood. We designed an approach based on estimating local ancestry along individual chromosomes to provide a detailed picture of genomic admixture in supplemented populations. We used this approach to document admixture consequences in the brown trout Salmo trutta, for which decades of stocking practices have profoundly impacted the genetic make-up of wild populations. In southern France, small local Mediterranean populations have been subject to successive introductions of domestic strains derived from the Atlantic and Mediterranean lineages. To address the impact of stocking, we evaluate the extent of admixture from both domestic strains within populations, using 75,684 mapped SNPs obtained from double-digested restriction site-associated DNA sequencing. Then, the chromosomal ancestry profiles of admixed individuals reveal a wider diversity of hybrid and introgressed genotypes than estimated using classical methods for inferring ancestry and hybrid pedigrees. In addition, the length distribution of introgressed tracts retained different timings of introgression between the two domestic strains. We finally reveal opposite consequences of admixture on the level of polymorphism of the recipient populations between domestic strains. Our study illustrates the potential of using the information contained in the genomic mosaic of ancestry tracts in combination with classical methods based on allele frequencies for analysing multiple-way admixture with population genomic data.
journal_name
Mol Ecoljournal_title
Molecular ecologyauthors
Leitwein M,Gagnaire PA,Desmarais E,Berrebi P,Guinand Bdoi
10.1111/mec.14816subject
Has Abstractpub_date
2018-09-01 00:00:00pages
3466-3483issue
17eissn
0962-1083issn
1365-294Xjournal_volume
27pub_type
杂志文章abstract::Spatial discordance between primary and effective dispersal in plant populations indicates that postdispersal processes erase the seed rain signal in recruitment patterns. Five different models were used to test the spatial concordance of the primary and effective dispersal patterns in a European beech (Fagus sylvatic...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.12200
更新日期:2013-03-01 00:00:00
abstract::To obtain further information on the polyploid dynamics of the the Dactylorhiza incarnata/maculata polyploid complex and the origin of the allotetraploid D. sphagnicola (Orchidaceae), plastid DNA variation was studied in 400 plants from from Sweden and elsewhere in Europe and Asia Minor by means of polymerase chain re...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.2003.01930.x
更新日期:2003-10-01 00:00:00
abstract::Several species of swallowtail butterflies (genus Papilio) are Batesian mimics that express multiple mimetic female forms, while the males are monomorphic and nonmimetic. The evolution of such sex-limited mimicry may involve sexual dimorphism arising first and mimicry subsequently. Such a stepwise scenario through a n...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.14012
更新日期:2017-03-01 00:00:00
abstract::We studied the physiological basis of local adaptation to drought in Boechera holboellii, a perennial relative of Arabidopsis thaliana, and used cDNA-AFLPs to identify candidate genes showing differential expression in these populations. We compared two populations of B. holboellii from contrasting water environments ...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2006.02818.x
更新日期:2006-04-01 00:00:00
abstract::The opportunity for a mutation to invade a population can dramatically vary depending on the context in which this mutation occurs. Such context dependence is difficult to document as it requires the ability to measure how a mutation affects phenotypes and fitness and to manipulate the context in which the mutation oc...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2010.04664.x
更新日期:2010-06-01 00:00:00
abstract::Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the norther...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.12902
更新日期:2014-10-01 00:00:00
abstract::Reef corals are especially sensitive to environmental change since their survival is dependent on a delicate balance between the coral host and its algal endosymbiont. Predicting the responses of reef ecosystems to global climate change requires a detailed understanding of the diversity of both partners in this symbio...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2007.03254.x
更新日期:2007-03-01 00:00:00
abstract::The spatial genetic structure of the neotropical, clustered tree species Vouacapoua americana (Aublet) was studied in two natural forest stands (Paracou and Nouragues) in French Guiana. Using eight microsatellite loci, V. americana is characterized by a marked genetic structure at small spatial distances (under 30-60 ...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.2002.01475.x
更新日期:2002-04-01 00:00:00
abstract::Rivers and lake systems in the southern cone of South America have been widely influenced by historical glaciations, carrying important implications for the evolution of aquatic organisms, including prompting transitions between marine and freshwater habitats and by triggering hybridization among incipient species via...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.15350
更新日期:2020-02-01 00:00:00
abstract::Allopolyploidization, that is, concomitant merging and doubling of two or more divergent genomes in a common nucleus/cytoplasm, is known to instantly alter genomewide transcriptome dynamics, a phenomenon referred to as "transcriptomic shock." However, the immediate effects of transcriptomic alteration in generating ph...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.14297
更新日期:2017-10-01 00:00:00
abstract::We investigated the relationship between genomic and phenotypic evolution among replicate populations of Escherichia coli evolved for 1000 generations in four different environments. By resequencing evolved genomes, we identified parallel changes in genes encoding transcription regulators within and between environmen...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.12312
更新日期:2013-06-01 00:00:00
abstract::Communities of arbuscular mycorrhizal fungi (AMF) in five agricultural field sites of different management intensities were studied. Variable regions of the ribosomal RNA genes were used to detect and identify AMF directly within colonized roots. Roots from a continuous maize monoculture showed low AMF diversity, in a...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2006.02921.x
更新日期:2006-07-01 00:00:00
abstract::To reveal the phylogeographical patterns of four species of coastal tiger beetles in Japan (Lophyridia angulata, Abroscelis anchoralis, Cicindela lewisii and Chaetodera laetescripta), we conducted phylogenetic and nested clade analysis (NCA) using the mitochondrial DNA sequences of two loci (COI and 16S rRNA), with sp...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2004.02274.x
更新日期:2004-10-01 00:00:00
abstract::Coral reefs belong to the most diverse ecosystems on our planet. The diversity in coloration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomac...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.13968
更新日期:2017-03-01 00:00:00
abstract::Ecosystems across the globe are threatened by climate change and human activities. New rapid survey approaches for monitoring biodiversity would greatly advance assessment and understanding of these threats. Taking advantage of next-generation DNA sequencing, we tested an approach we call metabarcoding: high-throughpu...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2012.05545.x
更新日期:2012-08-01 00:00:00
abstract::Social bees are important insect pollinators of wildflowers and agricultural crops, making their reported declines a global concern. A major factor implicated in these declines is the widespread use of neonicotinoid pesticides. Indeed, recent research has demonstrated that exposure to low doses of these neurotoxic pes...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.15047
更新日期:2019-04-01 00:00:00
abstract::Phylogeographical studies are emerging as a powerful tool for understanding the population structure and evolution of wild relatives of crop species. Because of their value as genetic resources, there is great interest in exploring the distribution of variation in wild relatives of cultivated plants. In this study, we...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2004.02191.x
更新日期:2004-07-01 00:00:00
abstract::Genetic diversity in experimental, domesticated and wild populations of the related yeasts, Saccharomyces cerevisiae and Saccharomyces paradoxus, has been well described at the global scale. We investigated the population genomics of a local population on a small spatial scale to address two main questions. First, is ...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.13954
更新日期:2017-02-01 00:00:00
abstract::It is now common for population geneticists to estimate FST for a large number of loci across the genome, before testing for selected loci as being outliers to the FST distribution. One surprising result of such FST scans is the often high proportion (>1% and sometimes >10%) of outliers detected, and this is often int...
journal_title:Molecular ecology
pub_type: 评论,杂志文章
doi:10.1111/mec.12241
更新日期:2013-04-01 00:00:00
abstract::Ribosomal DNA (rDNA) copy number variation (CNV) has major physiological implications for all organisms, but how it varies for fungi, an ecologically ubiquitous and important group of microorganisms, has yet to be systemically investigated. Here, we examine rDNA CNV using an in silico read depth approach for 91 fungal...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.14995
更新日期:2019-02-01 00:00:00
abstract::The temperature stress that pelagic fishes experience can induce physiological and behavioural changes that leave a signature in gene expression profiles. We used a functional genomics approach to identify genes that were up- or down-regulated following thermal stress in the Pacific bluefin tuna. Following the acclima...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2009.04174.x
更新日期:2009-05-01 00:00:00
abstract::Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original propor...
journal_title:Molecular ecology
pub_type: 杂志文章,meta分析
doi:10.1111/mec.14920
更新日期:2019-01-01 00:00:00
abstract::Mounting evidence suggests that average telomere length reflects previous stress and predicts subsequent survival across vertebrate species. In humans, leucocyte telomere length (LTL) is consistently shorter during adulthood in males than in females, although the causes of this sex difference and its generality to oth...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.13992
更新日期:2017-06-01 00:00:00
abstract::On one night per year, at a specific point in the lunar cycle, one of the most extraordinary reproductive events on the planet unfolds as hundreds of millions of broadcast spawning corals release their trillions of gametes into the waters of the tropical seas. Each species spawns on a specific night within the lunar c...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.14043
更新日期:2017-05-01 00:00:00
abstract::It has been hypothesized that salmonids use olfactory cues to return to their natal rivers and streams. However, the key components of the molecular pathway involved in imprinting and homing are still unknown. If odorants are involved in salmon homing migration, then olfactory receptors should play a critical role in ...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2011.05251.x
更新日期:2011-10-01 00:00:00
abstract::Selection on coevolving sperm- and egg-recognition molecules is a potent engine of population divergence leading to reproductive isolation and speciation. The study of receptor-ligand pairs can reveal co-evolution of male- and female-expressed genes or differences between their evolution in response to selective facto...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.12251
更新日期:2013-04-01 00:00:00
abstract::One of the major challenges in evolutionary biology is to understand the mechanisms underlying morphological dimorphism and plasticity, including the genomic basis of traits and links to ecology. At the yellow eel stage of the European eel (Anguilla anguilla), two morphotypes are found: broad- and narrow-heads. This d...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.14155
更新日期:2017-08-01 00:00:00
abstract::Anthropogenic global climate change is expected to cause severe range contractions among alpine plants. Alpine areas in the Mediterranean region are of special concern because of the high abundance of endemic species with narrow ranges. This study combined species distribution models, population structure analyses and...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.12383
更新日期:2013-08-01 00:00:00
abstract::Gene flow is a fundamental evolutionary force in adaptation that is especially important to understand as humans are rapidly changing both the natural environment and natural levels of gene flow. Theory proposes a multifaceted role for gene flow in adaptation, but it focuses mainly on the disruptive effect that gene f...
journal_title:Molecular ecology
pub_type: 杂志文章,评审
doi:10.1111/mec.13606
更新日期:2016-05-01 00:00:00
abstract::Elucidating the complex evolutionary armory that mosquitoes deploy against insecticides is crucial to maintain the effectiveness of insecticide-based interventions. Here, we deciphered the role of a 6.5-kb structural variation (SV) in driving cytochrome P450-mediated pyrethroid resistance in the malaria vector, Anophe...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.15645
更新日期:2020-11-01 00:00:00