Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral.

Abstract:

:On one night per year, at a specific point in the lunar cycle, one of the most extraordinary reproductive events on the planet unfolds as hundreds of millions of broadcast spawning corals release their trillions of gametes into the waters of the tropical seas. Each species spawns on a specific night within the lunar cycle, typically from full moon to third quarter moon, and in a specific time window after sunset. This accuracy is essential to achieve efficient fertilization in the vastness of the oceans. In this report, we use transcriptome sequencing at noon and midnight across an entire lunar cycle to explore how acroporid corals interpret lunar signals. The data were interrogated by both time-of-day-dependent and time-of-day-independent methods to identify different types of lunar cycles. Time-of-day methods found that genes associated with biological clocks and circadian processes change their diurnal cycles over the course of a synodic lunar cycle. Some genes have large differences between day and night at some lunar phases, but little or no diurnal differences at other phases. Many clock genes display an oscillation pattern indicative of phase shifts linked to the lunar cycle. Time-independent methods found that signal transduction, protein secretion and modification, cell cycle and ion transport change over the lunar timescale and peak at various phases of the moon. Together these data provide unique insights into how the moon impinges on coral transcription cycles and how lunar light may regulate circalunar timing systems and coral biology.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Oldach MJ,Workentine M,Matz MV,Fan TY,Vize PD

doi

10.1111/mec.14043

subject

Has Abstract

pub_date

2017-05-01 00:00:00

pages

2514-2526

issue

9

eissn

0962-1083

issn

1365-294X

journal_volume

26

pub_type

杂志文章
  • Patterns of interventions and the effect of coalitions and sociality on male fitness.

    abstract::In group living animals, especially among primates, there is consistent evidence that high-ranking males gain a higher reproductive output than low-ranking males. Primate studies have shown that male coalitions and sociality can impact male fitness; however, it remains unclear whether males could potentially increase ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05250.x

    authors: Kulik L,Muniz L,Mundry R,Widdig A

    更新日期:2012-02-01 00:00:00

  • Exploring population genetic structure in three species of Lesser Antillean bats.

    abstract::We explore population genetic structure in phyllostomid bats (Ardops nichollsi, Brachyphylla cavernarum and Artibeus jamaicensis) from the northern Lesser Antilles by investigating the degree to which island populations are genetically differentiated. Our hypothesis, that the island populations are genetically distinc...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02250.x

    authors: Carstens BC,Sullivan J,Davalos LM,Larsen PA,Pedersen SC

    更新日期:2004-09-01 00:00:00

  • Disentangling the effects of breakdown of self-incompatibility and transition to selfing in North American Arabidopsis lyrata.

    abstract::A breakdown of self-incompatibility (SI) followed by a shift to selfing is commonly observed in the evolution of flowering plants. Both are expected to reduce the levels of heterozygosity and genetic diversity. However, breakdown of SI should most strongly affect the region of the SI locus (S-locus) because of the rel...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05435.x

    authors: Haudry A,Zha HG,Stift M,Mable BK

    更新日期:2012-03-01 00:00:00

  • Phylogeography of the flat-tailed horned lizard (Phrynosoma mcallii) and systematics of the P. mcallii-platyrhinos mtDNA complex.

    abstract::Two species of horned lizards are sympatric along the periphery of the Salton Trough. Phrynosoma mcallii, endemic to the trough, is of conservation concern because its limited habitat has been fragmented by human activities. A more common and widespread species, Phrynosoma platyrhinos, occurs around the periphery of t...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.02892.x

    authors: Mulcahy DG,Spaulding AW,Mendelson JR 3rd,Brodie ED Jr

    更新日期:2006-06-01 00:00:00

  • Environmental filtering structures fungal endophyte communities in tree bark.

    abstract::The factors that control the assembly and composition of endophyte communities across plant hosts remains poorly understood. This is especially true for endophyte communities inhabiting inner tree bark, one of the least studied components of the plant microbiome. Here, we test the hypothesis that bark of different tre...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15237

    authors: Pellitier PT,Zak DR,Salley SO

    更新日期:2019-12-01 00:00:00

  • Climate and habitat barriers to dispersal in the highly mobile grey wolf.

    abstract::We reanalysed published data to evaluate whether climate and habitat are barriers to dispersal in one of the most mobile and widely distributed mammals, the grey wolf (Canis lupus). Distance-based redundancy analysis (dbRDA) was used to examine the amount of variation in genetic distances that could be explained by an...

    journal_title:Molecular ecology

    pub_type: 杂志文章,meta分析

    doi:10.1111/j.1365-294X.2004.02244.x

    authors: Geffen E,Anderson MJ,Wayne RK

    更新日期:2004-08-01 00:00:00

  • Adaptive population divergence and directional gene flow across steep elevational gradients in a climate-sensitive mammal.

    abstract::The ecological effects of climate change have been shown in most major taxonomic groups; however, the evolutionary consequences are less well-documented. Adaptation to new climatic conditions offers a potential long-term mechanism for species to maintain viability in rapidly changing environments, but mammalian exampl...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14701

    authors: Waterhouse MD,Erb LP,Beever EA,Russello MA

    更新日期:2018-06-01 00:00:00

  • Nonallopatric and parallel origin of local reproductive barriers between two snail ecotypes.

    abstract::Theory suggests that speciation is possible without physical isolation of populations (hereafter, nonallopatric speciation), but recent nonallopatric models need the support of irrefutable empirical examples. We collected snails (Littorina saxatilis) from three areas on the NW coast of Spain to investigate the populat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02330.x

    authors: Rolán-Alvarez E,Carballo M,Galindo J,Morán P,Fernández B,Caballero A,Cruz R,Boulding EG,Johannesson K

    更新日期:2004-11-01 00:00:00

  • High MHC gene copy number maintains diversity despite homozygosity in a Critically Endangered single-island endemic bird, but no evidence of MHC-based mate choice.

    abstract::Small population sizes can, over time, put species at risk due to the loss of genetic variation and the deleterious effects of inbreeding. Losing diversity in the major histocompatibility complex (MHC) could be particularly harmful, given its key role in the immune system. Here, we assess MHC class I (MHC-I) diversity...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15471

    authors: Stervander M,Dierickx EG,Thorley J,Brooke ML,Westerdahl H

    更新日期:2020-05-16 00:00:00

  • Exploration of community traits as ecological markers in microbial metagenomes.

    abstract::The rate of information collection generated by metagenomics is uncoupled with its meaningful ecological interpretation. New analytical approaches based on functional trait-based ecology may help to bridge this gap and extend the trait approach to the community level in vast and complex environmental genetic data sets...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05383.x

    authors: Barberán A,Fernández-Guerra A,Bohannan BJ,Casamayor EO

    更新日期:2012-04-01 00:00:00

  • Idiosyncratic responses to climate-driven forest fragmentation and marine incursions in reed frogs from Central Africa and the Gulf of Guinea Islands.

    abstract::Organismal traits interact with environmental variation to mediate how species respond to shared landscapes. Thus, differences in traits related to dispersal ability or physiological tolerance may result in phylogeographic discordance among co-distributed taxa, even when they are responding to common barriers. We quan...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14260

    authors: Bell RC,Parra JL,Badjedjea G,Barej MF,Blackburn DC,Burger M,Channing A,Dehling JM,Greenbaum E,Gvoždík V,Kielgast J,Kusamba C,Lötters S,McLaughlin PJ,Nagy ZT,Rödel MO,Portik DM,Stuart BL,VanDerWal J,Zassi-Boulou AG,

    更新日期:2017-10-01 00:00:00

  • Paternal effects in a wild-type zebrafish implicate a role of sperm-derived small RNAs.

    abstract::While the importance of maternal effects has long been appreciated, a growing body of evidence now points to the paternal environment having an important influence on offspring phenotype. Indeed, research on rodent models suggests that paternal stress leaves an imprint on the behaviour and physiology of offspring via ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15505

    authors: Ord J,Heath PR,Fazeli A,Watt PJ

    更新日期:2020-07-01 00:00:00

  • Conserving adaptive genetic diversity in dynamic landscapes.

    abstract::Genetic variation supplies the raw material for adaptation, evolution and survival of populations and has therefore been a key focus of conservation biology ever since its foundation (Soulé 1985). In previous decades, the neutral component of genetic diversity (generated by mutation and shaped by drift) has been the s...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-294x.2011.05024.x

    authors: Ficetola GF,Bonin AL

    更新日期:2011-04-01 00:00:00

  • No evidence for accumulation of deleterious mutations and fitness degradation in clonal fish hybrids: Abandoning sex without regrets.

    abstract::Despite its inherent costs, sexual reproduction is ubiquitous in nature, and the mechanisms to protect it from a competitive displacement by asexuality remain unclear. Popular mutation-based explanations, like the Muller's ratchet and the Kondrashov's hatchet, assume that purifying selection may not halt the accumulat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15539

    authors: Kočí J,Röslein J,Pačes J,Kotusz J,Halačka K,Koščo J,Fedorčák J,Iakovenko N,Janko K

    更新日期:2020-08-01 00:00:00

  • Landscape genetic analyses reveal fine-scale effects of forest fragmentation in an insular tropical bird.

    abstract::Within the framework of landscape genetics, resistance surface modelling is particularly relevant to explicitly test competing hypotheses about landscape effects on gene flow. To investigate how fragmentation of tropical forest affects population connectivity in a forest specialist bird species, we optimized resistanc...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14233

    authors: Khimoun A,Peterman W,Eraud C,Faivre B,Navarro N,Garnier S

    更新日期:2017-10-01 00:00:00

  • Effects of fine-scale genetic structure on male mating success in gynodioecious Beta vulgaris ssp. maritima.

    abstract::Plant mating systems are known to influence population genetic structure because pollen and seed dispersal are often spatially restricted. However, the reciprocal outcomes of population structure on the dynamics of polymorphic mating systems have received little attention. In gynodioecious sea beet (Beta vulgaris ssp....

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04586.x

    authors: DE Cauwer I,Dufay M,Cuguen J,Arnaud JF

    更新日期:2010-04-01 00:00:00

  • Clines and adaptive evolution in the methuselah gene region in Drosophila melanogaster.

    abstract::In an effort to characterize further the patterns of selection and adaptive evolution at the methuselah locus in Drosophila species, we extended an analysis of geographical variation to include single nucleotide polymorphisms (SNPs) in adjacent genes on either side of the mth locus, and examined the molecular variatio...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01841.x

    authors: Duvernell DD,Schmidt PS,Eanes WF

    更新日期:2003-05-01 00:00:00

  • Estimating synchronous demographic changes across populations using hABC and its application for a herpetological community from northeastern Brazil.

    abstract::Many studies propose that Quaternary climatic cycles contracted and/or expanded the ranges of species and biomes. Strong expansion-contraction dynamics of biomes presume concerted demographic changes of associated fauna. The analysis of temporal concordance of demographic changes can be used to test the influence of Q...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14239

    authors: Gehara M,Garda AA,Werneck FP,Oliveira EF,da Fonseca EM,Camurugi F,Magalhães FM,Lanna FM,Sites JW Jr,Marques R,Silveira-Filho R,São Pedro VA,Colli GR,Costa GC,Burbrink FT

    更新日期:2017-09-01 00:00:00

  • Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes.

    abstract::Coral reefs belong to the most diverse ecosystems on our planet. The diversity in coloration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomac...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13968

    authors: Stieb SM,Cortesi F,Sueess L,Carleton KL,Salzburger W,Marshall NJ

    更新日期:2017-03-01 00:00:00

  • Population genomics reveals structure at the individual, host-tree scale and persistence of genotypic variants of the undomesticated yeast Saccharomyces paradoxus in a natural woodland.

    abstract::Genetic diversity in experimental, domesticated and wild populations of the related yeasts, Saccharomyces cerevisiae and Saccharomyces paradoxus, has been well described at the global scale. We investigated the population genomics of a local population on a small spatial scale to address two main questions. First, is ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13954

    authors: Xia W,Nielly-Thibault L,Charron G,Landry CR,Kasimer D,Anderson JB,Kohn LM

    更新日期:2017-02-01 00:00:00

  • Genetic monitoring to assess the success of restoring rare plant populations with mixed gene pools.

    abstract::Increasing genetic diversity and maintaining evolutionary processes are primary goals of conservation translocations, which involve the intentional movement of an at-risk species to establish new populations or augment existing populations, with the ultimate goal of reversing declines. Much debate has focused on how t...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.15658

    authors: Albrecht MA,Edwards CE

    更新日期:2020-11-01 00:00:00

  • Microsatellite analysis of kinkajou social organization.

    abstract::Kinkajou social groups generally consist of one adult female, two males, one subadult and one juvenile. Based on analysis of variation in 11 microsatellite loci, we assess the degree of kinship within and between four social groups totaling 25 kinkajous. We use exclusion and likelihood analyses to assign parents for s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2000.00921.x

    authors: Kays RW,Gittleman JL,Wayne RK

    更新日期:2000-06-01 00:00:00

  • Allopatric speciation despite historical gene flow: Divergence and hybridization in Carex furva and C. lucennoiberica (Cyperaceae) inferred from plastid and nuclear RAD-seq data.

    abstract::Gene flow among incipient species can act as a creative or destructive force in the speciation process, generating variation on which natural selection can act while, potentially, undermining population divergence. The flowering plant genus Carex exhibits a rapid and relatively recent radiation with many species limit...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14253

    authors: Maguilla E,Escudero M,Hipp AL,Luceño M

    更新日期:2017-10-01 00:00:00

  • Accounting for environmental variation in co-occurrence modelling reveals the importance of positive interactions in root-associated fungal communities.

    abstract::Understanding the role of interspecific interactions in shaping ecological communities is one of the central goals in community ecology. In fungal communities, measuring interspecific interactions directly is challenging because these communities are composed of large numbers of species, many of which are unculturable...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15516

    authors: Abrego N,Roslin T,Huotari T,Tack AJM,Lindahl BD,Tikhonov G,Somervuo P,Schmidt NM,Ovaskainen O

    更新日期:2020-07-01 00:00:00

  • Checking the geographical origin of oak wood: molecular and statistical tools.

    abstract::New methods for better identification of timber geographical origin would constitute an important technical element in the forest industry, for phytosanitary certification procedures or in the chain of custody developed for the certification of timber from sustainably managed forests. In the case of the European white...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01836.x

    authors: Deguilloux MF,Pemonge MH,Bertel L,Kremer A,Petit RJ

    更新日期:2003-06-01 00:00:00

  • Uptake of Bt endotoxins by nontarget herbivores and higher order arthropod predators: molecular evidence from a transgenic corn agroecosystem.

    abstract::The planting of transgenic crops expressing Bacillus thuringiensis endotoxins is widespread throughout the world; the prolific increase in their application exposes nontarget organisms to toxins designed to control pests. To date, studies have focused upon the effects of Bt endotoxins on specific herbivores and detrit...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02611.x

    authors: Harwood JD,Wallin WG,Obrycki JJ

    更新日期:2005-08-01 00:00:00

  • Taxonomic complexity and breeding system transitions: conservation genetics of the Epipactis leptochila complex (Orchidaceae).

    abstract::The genus Epipactis contains a problematical complex of autogamous taxa among which species limits are difficult to define. Different authors have treated these plants in different ways, some recognizing the different taxa as distinct species, others considering them as minor intraspecific variants. These contrasting ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01610.x

    authors: Squirrell J,Hollingsworth PM,Bateman RM,Tebbitt MC,Hollingsworth ML

    更新日期:2002-10-01 00:00:00

  • Sculpin hybrid zones: natural laboratories for the early stages of speciation.

    abstract::Firmly rooted as we are in the genomic era, it can seem incredible that as recently as 1974, Lewontin declared, 'we know virtually nothing about the genetic changes that occur in species formation'. To the contrary, we now know the genetic architecture of phenotypic differences and reproductive isolation between speci...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-294X.2009.04209.x

    authors: Sweigart A

    更新日期:2009-06-01 00:00:00

  • Standardizing for microsatellite length in comparisons of genetic diversity.

    abstract::Mutation rates at microsatellites tend to increase with the number of repeats of the motif, leading to higher levels of polymorphism at long microsatellites. To standardize levels of diversity when microsatellites differ in size, we investigate the relationship between tract length and variation and provide a formula ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02446.x

    authors: Petit RJ,Deguilloux MF,Chat J,Grivet D,Garnier-Géré P,Vendramin GG

    更新日期:2005-03-01 00:00:00

  • Gene expression patterns underlying parasite-induced alterations in host behaviour and life history.

    abstract::Many parasites manipulate their hosts' phenotype. In particular, parasites with complex life cycles take control of their intermediate hosts' behaviour and life history to increase transmission to their definitive host. The proximate mechanisms underlying these parasite-induced alterations are poorly understood. The c...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13498

    authors: Feldmeyer B,Mazur J,Beros S,Lerp H,Binder H,Foitzik S

    更新日期:2016-01-01 00:00:00