How quantitative is metabarcoding: A meta-analytical approach.

Abstract:

:Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original proportions of species in a community. To quantify our current understanding, we conducted a structured review and meta-analysis. The analysis suggests that a weak quantitative relationship may exist between the biomass and sequences produced (slope = 0.52 ± 0.34, p < 0.01), albeit with a large degree of uncertainty. None of the tested moderators, sequencing platform type, the number of species used in a trial or the source of DNA, were able to explain the variance. Our current understanding of the factors affecting the quantitative performance of metabarcoding is still limited: additional research is required before metabarcoding can be confidently utilized for quantitative applications. Until then, we advocate the inclusion of mock communities when metabarcoding as this facilitates direct assessment of the quantitative ability of any given study.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Lamb PD,Hunter E,Pinnegar JK,Creer S,Davies RG,Taylor MI

doi

10.1111/mec.14920

subject

Has Abstract

pub_date

2019-01-01 00:00:00

pages

420-430

issue

2

eissn

0962-1083

issn

1365-294X

journal_volume

28

pub_type

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