Abstract:
:Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original proportions of species in a community. To quantify our current understanding, we conducted a structured review and meta-analysis. The analysis suggests that a weak quantitative relationship may exist between the biomass and sequences produced (slope = 0.52 ± 0.34, p < 0.01), albeit with a large degree of uncertainty. None of the tested moderators, sequencing platform type, the number of species used in a trial or the source of DNA, were able to explain the variance. Our current understanding of the factors affecting the quantitative performance of metabarcoding is still limited: additional research is required before metabarcoding can be confidently utilized for quantitative applications. Until then, we advocate the inclusion of mock communities when metabarcoding as this facilitates direct assessment of the quantitative ability of any given study.
journal_name
Mol Ecoljournal_title
Molecular ecologyauthors
Lamb PD,Hunter E,Pinnegar JK,Creer S,Davies RG,Taylor MIdoi
10.1111/mec.14920subject
Has Abstractpub_date
2019-01-01 00:00:00pages
420-430issue
2eissn
0962-1083issn
1365-294Xjournal_volume
28pub_type
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