Autophagic compound database: A resource connecting autophagy-modulating compounds, their potential targets and relevant diseases.

Abstract:

OBJECTIVES:Autophagy, a highly conserved lysosomal degradation process in eukaryotic cells, can digest long-lived proteins and damaged organelles through vesicular trafficking pathways. Nowadays, mechanisms of autophagy have been gradually elucidated and thus the discovery of small-molecule drugs targeting autophagy has always been drawing much attention. So far, some autophagy-related web servers have been available online to facilitate scientists to obtain the information relevant to autophagy conveniently, such as HADb, CTLPScanner, iLIR server and ncRDeathDB. However, to the best of our knowledge, there is not any web server available about the autophagy-modulating compounds. METHODS:According to published articles, all the compounds and their relations with autophagy were anatomized. Subsequently, an online Autophagic Compound Database (ACDB) (http://www.acdbliulab.com/) was constructed, which contained information of 357 compounds with 164 corresponding signalling pathways and potential targets in different diseases. RESULTS:We achieved a great deal of information of autophagy-modulating compounds, including compounds, targets/pathways and diseases. ACDB is a valuable resource for users to access to more than 300 curated small-molecule compounds correlated with autophagy. CONCLUSIONS:Autophagic compound database will facilitate to the discovery of more novel therapeutic drugs in the near future.

journal_name

Cell Prolif

journal_title

Cell proliferation

authors

Deng Y,Zhu L,Cai H,Wang G,Liu B

doi

10.1111/cpr.12403

subject

Has Abstract

pub_date

2018-06-01 00:00:00

pages

e12403

issue

3

eissn

0960-7722

issn

1365-2184

journal_volume

51

pub_type

杂志文章
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    authors: Li X,Darzynkiewicz Z

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    abstract::The microenvironmental changes in the bone marrow, spleen and liver during progression of the transplantable promyelocytic leukaemia in the Brown Norwegian rat (BNML) have been studied. We used flow cytometry to estimate cellular hypoxia and proliferation based on in vivo pulse-labelling with a mixture of 2-nitroimida...

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    doi:10.1046/j.1365-2184.2000.00183.x

    authors: Jensen PO,Mortensen BT,Hodgkiss RJ,Iversen PO,Christensen IJ,Helledie N,Larsen JK

    更新日期:2000-12-01 00:00:00

  • Oestrogen receptor α regulates the odonto/osteogenic differentiation of stem cells from apical papilla via ERK and JNK MAPK pathways.

    abstract:OBJECTIVES:Oestrogen receptor (ER) is a common nucleus receptor that is essential for the regulation of cell growth, proliferation and differentiation. This study was to examine whether ERα can affect the proliferation and odonto/osteogenic differentiation of stem cells from apical papilla (SCAPs). MATERIALS AND METHO...

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    authors: Wang Y,Lu Y,Li Z,Zhou Y,Gu Y,Pang X,Wu J,Gobin R,Yu J

    更新日期:2018-12-01 00:00:00

  • ATP mediates the interaction between human blastocyst and endometrium.

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    journal_title:Cell proliferation

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    doi:10.1111/cpr.12737

    authors: Gu XW,Yang Y,Li T,Chen ZC,Fu T,Pan JM,Ou JP,Yang ZM

    更新日期:2020-02-01 00:00:00

  • Induced pluripotent stem cells as a new getaway for bone tissue engineering: A systematic review.

    abstract:OBJECTIVES:Mesenchymal stem cells (MSCs) are frequently used for bone regeneration, however, they are limited in quantity. Moreover, their proliferation and differentiation capabilities reduce during cell culture expansion. Potential application of induced pluripotent stem cells (iPSCs) has been reported as a promising...

    journal_title:Cell proliferation

    pub_type: 杂志文章,评审

    doi:10.1111/cpr.12321

    authors: Bastami F,Nazeman P,Moslemi H,Rezai Rad M,Sharifi K,Khojasteh A

    更新日期:2017-04-01 00:00:00

  • Tetrahedral DNA nanostructures facilitate neural stem cell migration via activating RHOA/ROCK2 signalling pathway.

    abstract:OBJECTIVES:The main purpose of current study was to explore the effects of tetrahedral DNA nanostructures (TDNs) on neuroectodermal (NE-4C) stem cells migration and unveil the potential mechanisms. MATERIALS AND METHODS:The successfully self-assembled TDNs were also determined by dynamic light scattering (DLS). A bidi...

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    doi:10.1111/cpr.12503

    authors: Ma W,Xie X,Shao X,Zhang Y,Mao C,Zhan Y,Zhao D,Liu M,Li Q,Lin Y

    更新日期:2018-12-01 00:00:00

  • Intestinal crypt clonogens: a new interpretation of radiation survival curve shape and clonogenic cell number.

    abstract::Estimates of the clonogen content (number of microcolony-forming cells) of murine intestinal crypts using microcolony assays show an apparent dependence on the radiation dose used in the assay of clonogen content. Crypt radiation survival curves often show increased curvature beyond that expected on the basis of the c...

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    pub_type: 杂志文章

    doi:10.1046/j.1365-2184.2003.00279.x

    authors: Roberts SA,Hendry JH,Potten CS

    更新日期:2003-08-01 00:00:00

  • KLF3 promotes the 8-cell-like transcriptional state in pluripotent stem cells.

    abstract:OBJECTIVES:Mouse embryonic stem cell (mESC) culture contains various heterogeneous populations, which serve as excellent models to study gene regulation in early embryo development. The heterogeneity is typically defined by transcriptional activities, for example, the expression of Nanog or Rex1 mRNA. Our objectives we...

    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/cpr.12914

    authors: Hao J,Yang X,Zhang C,Zhang XT,Shi M,Wang SH,Mi L,Zhao YT,Cao H,Wang Y

    更新日期:2020-11-01 00:00:00

  • High PD-L1 expression in the tumour cells did not correlate with poor prognosis of patients suffering for oral squamous cells carcinoma: A meta-analysis of the literature.

    abstract:OBJECTIVES:Oral cancer represents one of the most common malignancies in humans. Its prognosis is still poor, despite the most recent improvements in therapies. An increasing attention is placed on the role of programmed death ligand 1 (PD-L1) in the tumour immunity and its potential function as a marker for tumour pro...

    journal_title:Cell proliferation

    pub_type: 杂志文章,meta分析

    doi:10.1111/cpr.12537

    authors: Troiano G,Caponio VCA,Zhurakivska K,Arena C,Pannone G,Mascitti M,Santarelli A,Lo Muzio L

    更新日期:2019-03-01 00:00:00

  • Laminin-2 stimulates the proliferation of epithelial cells in a conjunctival epithelial cell line.

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    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.2004.00292.x

    authors: Dowgiert J,Sosne G,Kurpakus-Wheater M

    更新日期:2004-04-01 00:00:00

  • Overproduced bone marrow neutrophils in collagen-induced arthritis are primed for NETosis: An ignored pathological cell involving inflammatory arthritis.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/cpr.12824

    authors: Xu D,Lin Y,Shen J,Zhang J,Wang J,Zhang Y,Zhang H,Ning L,Liu P,Li S,Zeng H,Lin J,Yu C

    更新日期:2020-07-01 00:00:00

  • Aspirin suppresses 1,2-dimethylhydrazine-induced alteration of proliferative parameters in rat colonic crypts.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.1996.tb00989.x

    authors: Barnes CJ,Lee M,Hardman WE,Cameron IL

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  • miR-193b availability is antagonized by LncRNA-SNHG7 for FAIM2-induced tumour progression in non-small cell lung cancer.

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    pub_type: 杂志文章

    doi:10.1111/cpr.12406

    authors: She K,Yan H,Huang J,Zhou H,He J

    更新日期:2018-02-01 00:00:00

  • Effects of growth media on cell cycle progression in CHO cells exposed to the radioprotector WR-1065.

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    pub_type: 杂志文章

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    authors: Murley JS,Grdina DJ,Meechan PJ

    更新日期:1992-11-01 00:00:00

  • Expression of HMGA2 in bladder cancer and its association with epithelial-to-mesenchymal transition.

    abstract:OBJECTIVES:High mobility group protein2 (HMGA2) and epithelial-to-mesenchymal transition are both related to progress of bladder cancer, however, the relationship between HMGA2, E-cadherin and vimentin in bladder cancer is not yet known. Thus, this study has examined expression of HMGA2, E-cadherin and vimentin in blad...

    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/cpr.12096

    authors: Ding X,Wang Y,Ma X,Guo H,Yan X,Chi Q,Li J,Hou Y,Wang C

    更新日期:2014-04-01 00:00:00

  • Role of proliferation and apoptosis in net growth rates of human breast cancer cells (MCF-7) treated with oestradiol and/or tamoxifen.

    abstract::Studies on growth regulation in vitro to a large extent rely on comparison of growth curves. However, these do not discriminate between the relative contributions of the mitotic rate and the apoptotic rate to the net growth rate. In the present study, differential effects of 17beta-oestradiol (E2, 10(-8) M) and/or tam...

    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1046/j.1365-2184.1999.3250289.x

    authors: Budtz PE

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  • Effects of 4-nonylphenol on proliferation of AGS gastric cells.

    abstract:OBJECTIVES:Nonylphenol (NP) is present ubiquitously in both aquatic and terrestrial environments. This compound is considered an important endocrine disruptor and its toxic/oestrogenic activity has been investigated in a number of in vitro and in vivo studies. Human exposure to NP may occur by cutaneous absorption, ing...

    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.2011.00774.x

    authors: Manente L,Sellitti A,Lucariello A,Laforgia V,De Falco M,De Luca A

    更新日期:2011-10-01 00:00:00

  • Mathematical modelling of microenvironment and growth in EMT6/Ro multicellular tumour spheroids.

    abstract::In order to determine the role of micromilieu in tumour spheroid growth, a mathematical model was developed to predict EMT6/Ro spheroid growth and microenvironment based upon numerical solution of the diffusion/reaction equation for oxygen, glucose, lactate ion, carbon dioxide, bicarbonate ion, chlorine ion and hydrog...

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.2007.00464.x

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  • Possibility of selection of chondrogenic progenitor cells by telomere length in FGF-2-expanded mesenchymal stromal cells.

    abstract::Telomere length plays an important role in regulating the proliferative capacity of cells, and serves as a marker for cell cycle history and also for their remaining replicative potential. Mesenchymal stromal cells (MSC) are known to be a significant cell source for therapeutic intervention and tissue engineering. To ...

    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.2006.00397.x

    authors: Yanada S,Ochi M,Kojima K,Sharman P,Yasunaga Y,Hiyama E

    更新日期:2006-12-01 00:00:00

  • p53-dependent up-regulation of CDKN1A and down-regulation of CCNE2 in response to beryllium.

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  • Renal differentiation of amniotic fluid stem cells.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.2007.00478.x

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    更新日期:2007-12-01 00:00:00

  • CD133: holy of grail of neuro-oncology or promiscuous red-herring?

    abstract::The CD133 glycoprotein is a controversial cancer stem cell marker in the field of neuro-oncology, based largely on the now considerable experimental evidence for the existence of both CD133+ve and CD133-ve populations as tumour-initiating cells. It is thought that decreasing oxygen tension enhances the complex regulat...

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  • Different effects of ribosome biogenesis inhibition on cell proliferation in retinoblastoma protein- and p53-deficient and proficient human osteosarcoma cell lines.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.2007.00448.x

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    更新日期:2007-08-01 00:00:00

  • Effects of simulated microgravity on the expression profiles of RNA during osteogenic differentiation of human bone marrow mesenchymal stem cells.

    abstract:OBJECTIVES:Exposure to microgravity induces many adaptive and pathological changes in human bone marrow mesenchymal stem cells (hBMSCs). However, the underlying mechanisms of these changes are poorly understood. We revealed the gene expression patterns of hBMSCs under normal ground (NG) and simulated microgravity (SMG)...

    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/cpr.12539

    authors: Li L,Zhang C,Chen JL,Hong FF,Chen P,Wang JF

    更新日期:2019-03-01 00:00:00

  • Triiodothyronine stimulates hepatocyte proliferation in two models of impaired liver regeneration.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/j.1365-2184.2008.00532.x

    authors: Columbano A,Simbula M,Pibiri M,Perra A,Deidda M,Locker J,Pisanu A,Uccheddu A,Ledda-Columbano GM

    更新日期:2008-06-01 00:00:00

  • The influence of STAT5 antisense oligonucleotides on the proliferation and apoptosis of selected human leukaemic cell lines.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1046/j.1365-2184.2003.00283.x

    authors: Baśkiewicz-Masiuk M,Masiuk M,Machaliński B

    更新日期:2003-10-01 00:00:00

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/cpr.12387

    authors: Friedrich CC,Lin Y,Krannich A,Wu Y,Vacanti JP,Neville CM

    更新日期:2018-02-01 00:00:00

  • Human red blood cells have an enhancing effect on the relative expansion of CD8+ T lymphocytes in vitro.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1046/j.1365-2184.2001.00222.x

    authors: Porto B,Fonseca AM,Godinho I,Arosa FA,Porto G

    更新日期:2001-12-01 00:00:00

  • Circulating microRNA signature of steroid-induced osteonecrosis of the femoral head.

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    journal_title:Cell proliferation

    pub_type: 杂志文章

    doi:10.1111/cpr.12418

    authors: Li Z,Jiang C,Li X,Wu WKK,Chen X,Zhu S,Ye C,Chan MTV,Qian W

    更新日期:2018-02-01 00:00:00