Engineering a bacterial platform for total biosynthesis of caffeic acid derived phenethyl esters and amides.

Abstract:

:Caffeic acid has been widely recognized as a versatile pharmacophore for synthesis of new chemical entities, among which caffeic acid derived phenethyl esters and amides are the most extensively-investigated bioactive compounds with potential therapeutical applications. However, the natural biosynthetic routes for caffeic acid derived phenethyl esters or amides remain enigmatic, limiting their bio-based production. Herein, product-directed design of biosynthetic schemes allowed the development of thermodynamically favorable pathways for these compounds via acyltransferase (ATF) mediated trans-esterification. Production based screening identified a microbial O-ATF from Saccharomyces cerevisiae and a plant N-ATF from Capsicum annuum capable of forming caffeic acid derived esters and amides, respectively. Subsequent combinatorial incorporation of caffeic acid with various aromatic alcohol or amine biosynthetic pathways permitted the de novo bacterial production of a panel of caffeic acid derived phenethyl esters or amides in Escherichia coli for the first time. Particularly, host strain engineering via systematic knocking out endogenous caffeoyl-CoA degrading thioesterase and pathway optimization via titrating co-substrates enabled production enhancement of five caffeic acid derived phenethyl esters and amides, with titers ranging from 9.2 to 369.1mg/L. This platform expanded the capabilities of bacterial production of high-value natural aromatic esters and amides from renewable carbon source via tailoring non-natural biosynthetic pathways.

journal_name

Metab Eng

journal_title

Metabolic engineering

authors

Wang J,Mahajani M,Jackson SL,Yang Y,Chen M,Ferreira EM,Lin Y,Yan Y

doi

10.1016/j.ymben.2017.09.011

subject

Has Abstract

pub_date

2017-11-01 00:00:00

pages

89-99

eissn

1096-7176

issn

1096-7184

pii

S1096-7176(17)30256-2

journal_volume

44

pub_type

杂志文章
  • Engineering of carboligase activity reaction in Candida glabrata for acetoin production.

    abstract::Utilization of Candida glabrata overproducing pyruvate is a promising strategy for high-level acetoin production. Based on the known regulatory and metabolic information, acetaldehyde and thiamine were fed to identify the key nodes of carboligase activity reaction (CAR) pathway and provide a direction for engineering ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2013.12.005

    authors: Li S,Xu N,Liu L,Chen J

    更新日期:2014-03-01 00:00:00

  • Production of sesquiterpenoid zerumbone from metabolic engineered Saccharomyces cerevisiae.

    abstract::Zerumbone, the predominant sesquiterpenoid component of Zingiber zerumbet, exhibits diverse pharmacological properties. In this study, de novo production of zerumbone was achieved in a metabolically engineered yeast cell factory by introducing α-humulene synthase (ZSS1), α-humulene 8-hydroxylase (CYP71BA1) and zerumbo...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2018.07.010

    authors: Zhang C,Liu J,Zhao F,Lu C,Zhao GR,Lu W

    更新日期:2018-09-01 00:00:00

  • Dynamic consolidated bioprocessing for direct production of xylonate and shikimate from xylan by Escherichia coli.

    abstract::Numerous value-added chemicals can be produced using xylan as a feedstock. However, the product yields are limited by low xylan utilization efficiency, as well as by carbon flux competition between biomass production and biosynthesis. Herein, a dynamic consolidated bioprocessing strategy was developed, which coupled x...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2020.04.001

    authors: Gao C,Guo L,Ding Q,Hu G,Ye C,Liu J,Chen X,Liu L

    更新日期:2020-07-01 00:00:00

  • Glycosylation flux analysis reveals dynamic changes of intracellular glycosylation flux distribution in Chinese hamster ovary fed-batch cultures.

    abstract::N-linked glycosylation of proteins has both functional and structural significance. Importantly, the glycan structure of a therapeutic protein influences its efficacy, pharmacokinetics, pharmacodynamics and immunogenicity. In this work, we developed glycosylation flux analysis (GFA) for predicting intracellular produc...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2017.07.005

    authors: Hutter S,Villiger TK,Brühlmann D,Stettler M,Broly H,Soos M,Gunawan R

    更新日期:2017-09-01 00:00:00

  • Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications.

    abstract::Control of gene and protein expression of both endogenous and heterologous genes is a key component of metabolic engineering. While a large amount of work has been published characterizing promoters for this purpose, less effort has been exerted to elucidate the role of terminators in yeast. In this study, we characte...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2013.07.001

    authors: Curran KA,Karim AS,Gupta A,Alper HS

    更新日期:2013-09-01 00:00:00

  • Deciphering flux adjustments of engineered E. coli cells during fermentation with changing growth conditions.

    abstract::Microbial fermentation conditions are dynamic, due to transcriptional induction, nutrient consumption, or changes to incubation conditions. In this study, 13C-metabolic flux analysis was used to characterize two violacein-producing E. coli strains with vastly different productivities, and to profile their metabolic ad...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2016.12.008

    authors: He L,Xiu Y,Jones JA,Baidoo EEK,Keasling JD,Tang YJ,Koffas MAG

    更新日期:2017-01-01 00:00:00

  • Improving recombinant bone morphogenetic protein-4 (BMP-4) production by autoregulatory feedback loop removal using BMP receptor-knockout CHO cell lines.

    abstract::A Chinese hamster ovary (CHO) cell line producing recombinant human bone morphogenetic protein-4 (rhBMP-4) (CHO-BMP-4), which expresses essential components of BMP signal transduction, underwent autocrine BMP-4 signaling. RNA seq analysis on CHO host cells (DG44) treated with rhBMP-4 (20 µg/mL) suggested that rhBMP-4 ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2018.11.003

    authors: Kim CL,Lee GM

    更新日期:2019-03-01 00:00:00

  • Characterization and engineering of 3-ketosteroid-△1-dehydrogenase and 3-ketosteroid-9α-hydroxylase in Mycobacterium neoaurum ATCC 25795 to produce 9α-hydroxy-4-androstene-3,17-dione through the catabolism of sterols.

    abstract::3-Ketosteroid-△(1)-dehydrogenase (KstD) is a key enzyme involved in the microbial catabolism of sterols. Here, three homologues of KstD were characterized from Mycobacterium neoaurum ATCC 25795, showing distinct substrate preferences and transcriptional responses to steroids. Single deletion of any MN-kstD failed to r...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2014.05.005

    authors: Yao K,Xu LQ,Wang FQ,Wei DZ

    更新日期:2014-07-01 00:00:00

  • Review of methods to probe single cell metabolism and bioenergetics.

    abstract::Single cell investigations have enabled unexpected discoveries, such as the existence of biological noise and phenotypic switching in infection, metabolism and treatment. Herein, we review methods that enable such single cell investigations specific to metabolism and bioenergetics. Firstly, we discuss how to isolate a...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2014.09.007

    authors: Vasdekis AE,Stephanopoulos G

    更新日期:2015-01-01 00:00:00

  • Ensemble Modeling for Robustness Analysis in engineering non-native metabolic pathways.

    abstract::Metabolic pathways in cells must be sufficiently robust to tolerate fluctuations in expression levels and changes in environmental conditions. Perturbations in expression levels may lead to system failure due to the disappearance of a stable steady state. Increasing evidence has suggested that biological networks have...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2014.06.006

    authors: Lee Y,Lafontaine Rivera JG,Liao JC

    更新日期:2014-09-01 00:00:00

  • Engineering Saccharomyces cerevisiae for production of simvastatin.

    abstract::Simvastatin is a semisynthetic cholesterol-lowering medication and one of the top-selling statins in the world. Currently, industrial production of simvastatin acid (SVA) is a multistep process starting from the natural product lovastatin. For this reason, there is significant interest in direct production of simvasta...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2018.09.005

    authors: Bond CM,Tang Y

    更新日期:2019-01-01 00:00:00

  • A synthetic cGMP-sensitive gene switch providing Viagra(®)-controlled gene expression in mammalian cells and mice.

    abstract::Cyclic guanosine monophosphate (cGMP) is a universal second messenger that is synthesized from guanosine triphosphate (GTP) by guanylyl cyclases (GCs) and hydrolyzed into guanosine monophosphate (GMP) by phosphodiesterases (PDEs). Small-molecule drugs that induce high cGMP levels in specialized tissues by boosting GC ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2015.03.016

    authors: Kim T,Folcher M,Charpin-El Hamri G,Fussenegger M

    更新日期:2015-05-01 00:00:00

  • Combination of type II fatty acid biosynthesis enzymes and thiolases supports a functional β-oxidation reversal.

    abstract::An engineered reversal of the β-oxidation cycle (r-BOX) and the fatty acid biosynthesis (FAB) pathway are promising biological platforms for advanced fuel and chemical production in part due to their iterative nature supporting the synthesis of various chain length products. While diverging in their carbon-carbon elon...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2017.11.003

    authors: Clomburg JM,Contreras SC,Chou A,Siegel JB,Gonzalez R

    更新日期:2018-01-01 00:00:00

  • Efficient mining of natural NADH-utilizing dehydrogenases enables systematic cofactor engineering of lysine synthesis pathway of Corynebacterium glutamicum.

    abstract::Increasing the availability of NADPH is commonly used to improve lysine production by Corynebacterium glutamicum since 4 mol of NADPH are required for the synthesis of 1 mol of lysine. Alternatively, engineering of enzymes in lysine synthesis pathway to utilize NADH directly can also be explored for cofactor balance d...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2018.11.006

    authors: Wu W,Zhang Y,Liu D,Chen Z

    更新日期:2019-03-01 00:00:00

  • Manipulating respiratory levels in Escherichia coli for aerobic formation of reduced chemical products.

    abstract::Optimizing the productivity of bioengineered strains requires balancing ATP generation and carbon atom conservation through fine-tuning cell respiration and metabolism. Traditional approaches manipulate cell respiration by altering air feeding, which are technically difficult especially in large bioreactors. An approa...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2011.09.006

    authors: Zhu J,Sánchez A,Bennett GN,San KY

    更新日期:2011-11-01 00:00:00

  • Minimization of glycerol synthesis in industrial ethanol yeast without influencing its fermentation performance.

    abstract::To synthesize glycerol, a major by-product during anaerobic production of ethanol, the yeast Saccharomyces cerevisiae would consume up to 4% of the sugar feedstock in typical industrial ethanol processes. The present study was dedicated to decreasing the glycerol production mostly in industrial ethanol producing yeast...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2010.11.003

    authors: Guo ZP,Zhang L,Ding ZY,Shi GY

    更新日期:2011-01-01 00:00:00

  • Metabolome, transcriptome and metabolic flux analysis of arabinose fermentation by engineered Saccharomyces cerevisiae.

    abstract::One of the challenges in strain improvement by evolutionary engineering is to subsequently determine the molecular basis of the improved properties that were enriched from the natural genetic variation during the selective conditions. This study focuses on Saccharomyces cerevisiae IMS0002 which, after metabolic and ev...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2010.08.003

    authors: Wisselink HW,Cipollina C,Oud B,Crimi B,Heijnen JJ,Pronk JT,van Maris AJ

    更新日期:2010-11-01 00:00:00

  • Engineering microbes for isoprene production.

    abstract::Isoprene is facing a growing global market due to its wide industrial applications. Current industrial production of isoprene is almost entirely petroleum-based, which is influenced by the shrinking C5 supply, while the natural emission of isoprene is predominantly contributed by plants. To bridge the need gap, a high...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2016.07.005

    authors: Ye L,Lv X,Yu H

    更新日期:2016-11-01 00:00:00

  • Improvement of 1,3-propanediol production using an engineered cyanobacterium, Synechococcus elongatus by optimization of the gene expression level of a synthetic metabolic pathway and production conditions.

    abstract::The introduction of a synthetic metabolic pathway consisting of multiple genes derived from various organisms enables cyanobacteria to directly produce valuable chemicals from carbon dioxide. We previously constructed a synthetic metabolic pathway composed of genes from Escherichia coli, Saccharomyces cerevisiae, and ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2016.12.001

    authors: Hirokawa Y,Maki Y,Hanai T

    更新日期:2017-01-01 00:00:00

  • Enhancement of acetyl-CoA flux for photosynthetic chemical production by pyruvate dehydrogenase complex overexpression in Synechococcus elongatus PCC 7942.

    abstract::Genetic manipulation in cyanobacteria enables the direct production of valuable chemicals from carbon dioxide. However, there are still very few reports of the production of highly effective photosynthetic chemicals. Several synthetic metabolic pathways (e.g., isopropanol, acetone, isoprene, and fatty acids) have been...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2019.07.012

    authors: Hirokawa Y,Kubo T,Soma Y,Saruta F,Hanai T

    更新日期:2020-01-01 00:00:00

  • Improvement of a CrtO-type of beta-carotene ketolase for canthaxanthin production in Methylomonas sp.

    abstract::Two types of non-homologous beta-carotene ketolases (CrtW and CrtO) were previously described. We report improvement of a CrtO-type of beta-carotene ketolase for canthaxanthin production in a methylotrophic bacterium, Methylomonas sp. 16a, which could use the C1 substrate (methane or methanol) as sole carbon and energ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2007.05.004

    authors: Tang XS,Shyr J,Tao L,Sedkova N,Cheng Q

    更新日期:2007-07-01 00:00:00

  • Metabolic transistor strategy for controlling electron transfer chain activity in Escherichia coli.

    abstract::A novel strategy to finely control a large metabolic flux by using a "metabolic transistor" approach was established. In this approach a small change in the level or availability of an essential component for the process is controlled by adding a competitive reaction that affects a precursor or an intermediate in its ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2015.01.002

    authors: Wu H,Tuli L,Bennett GN,San KY

    更新日期:2015-03-01 00:00:00

  • Use of pantothenate as a metabolic switch increases the genetic stability of farnesene producing Saccharomyces cerevisiae.

    abstract::We observed that removing pantothenate (vitamin B5), a precursor to co-enzyme A, from the growth medium of Saccharomyces cerevisiae engineered to produce β-farnesene reduced the strain׳s farnesene flux by 70%, but increased its viability, growth rate and biomass yield. Conversely, the growth rate and biomass yield of ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2014.07.006

    authors: Sandoval CM,Ayson M,Moss N,Lieu B,Jackson P,Gaucher SP,Horning T,Dahl RH,Denery JR,Abbott DA,Meadows AL

    更新日期:2014-09-01 00:00:00

  • High level production of flavonoid rhamnosides by metagenome-derived Glycosyltransferase C in Escherichia coli utilizing dextrins of starch as a single carbon source.

    abstract::Flavonoids exert a wide variety of biological functions that are highly attractive for the pharmaceutical and healthcare industries. However, their application is often limited by low water solubility and poor bioavailability, which can generally be relieved through glycosylation. Glycosyltransferase C (GtfC), a metag...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2019.07.002

    authors: Ruprecht C,Bönisch F,Ilmberger N,Heyer TV,Haupt ETK,Streit WR,Rabausch U

    更新日期:2019-09-01 00:00:00

  • A biosynthetic route for polysialylating proteins in Escherichia coli.

    abstract::Polysialic acid (polySia) is a posttranslational modification found on only a handful of proteins in the central nervous and immune systems. The addition of polySia to therapeutic proteins improves pharmacokinetics and reduces immunogenicity. To date, polysialylation of therapeutic proteins has only been achieved in v...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2017.10.012

    authors: Keys TG,Wetter M,Hang I,Rutschmann C,Russo S,Mally M,Steffen M,Zuppiger M,Müller F,Schneider J,Faridmoayer A,Lin CW,Aebi M

    更新日期:2017-11-01 00:00:00

  • Functional expression of prokaryotic and eukaryotic genes in Escherichia coli for conversion of glucose to p-hydroxystyrene.

    abstract::The chemical monomer p-hydroxystyrene (pHS) is used for producing a number of important industrial polymers from petroleum-based feedstocks. In an alternative approach, the microbial production of pHS can be envisioned by linking together a number of different metabolic pathways, of which those based on using glucose ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2007.01.002

    authors: Qi WW,Vannelli T,Breinig S,Ben-Bassat A,Gatenby AA,Haynie SL,Sariaslani FS

    更新日期:2007-05-01 00:00:00

  • Chromosome engineering of the TCA cycle in Halomonas bluephagenesis for production of copolymers of 3-hydroxybutyrate and 3-hydroxyvalerate (PHBV).

    abstract::Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) is a promising biopolyester with good mechanical properties and biodegradability. Large-scale production of PHBV is still hindered by the high production cost. CRISPR/Cas9 method was used to engineer the TCA cycle in Halomonas bluephagenesis on its chromosome for pro...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2019.03.006

    authors: Chen Y,Chen XY,Du HT,Zhang X,Ma YM,Chen JC,Ye JW,Jiang XR,Chen GQ

    更新日期:2019-07-01 00:00:00

  • A real-time control system of gene expression using ligand-bound nucleic acid aptamer for metabolic engineering.

    abstract::Artificial control of bio-functions through regulating gene expression is one of the most important and attractive technologies to build novel living systems that are useful in the areas of chemical synthesis, nanotechnology, pharmacology, cell biology. Here, we present a novel real-time control system of gene regulat...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2017.06.002

    authors: Wang J,Cui X,Yang L,Zhang Z,Lv L,Wang H,Zhao Z,Guan N,Dong L,Chen R

    更新日期:2017-07-01 00:00:00

  • Identification and elimination of metabolic bottlenecks in the quinone modification pathway for enhanced coenzyme Q10 production in Rhodobacter sphaeroides.

    abstract::In this report, UbiE and UbiH in the quinone modification pathway (QMP) were identified in addition to UbiG as bottleneck enzymes in the CoQ10 biosynthesis by Rhodobacter sphaeroides. The CoQ10 content was enhanced after co-overexpression of UbiE and UbiG, however, accompanied by the accumulation of the intermediate 1...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2015.03.012

    authors: Lu W,Ye L,Lv X,Xie W,Gu J,Chen Z,Zhu Y,Li A,Yu H

    更新日期:2015-05-01 00:00:00

  • Production of muconic acid in plants.

    abstract::Muconic acid (MA) is a dicarboxylic acid used for the production of industrially relevant chemicals such as adipic acid, terephthalic acid, and caprolactam. Because the synthesis of these polymer precursors generates toxic intermediates by utilizing petroleum-derived chemicals and corrosive catalysts, the development ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2018.02.002

    authors: Eudes A,Berthomieu R,Hao Z,Zhao N,Benites VT,Baidoo EEK,Loqué D

    更新日期:2018-03-01 00:00:00