Identification of Males with Cryptic Fragile X Alleles by Methylation-Specific Quantitative Melt Analysis.

Abstract:

BACKGROUND:FMR1 full mutations (FMs) (CGG expansion >200) in males mosaic for a normal (<45 CGG) or gray-zone (GZ) (45-54 CGG) allele can be missed with the standard 2-step fragile X syndrome (FXS) testing protocols, largely because the first-line PCR tests showing a normal or GZ allele are not reflexed to the second-line test that can detect FM. METHODS:We used methylation-specific quantitative melt analysis (MS-QMA) to determine the prevalence of cryptic FM alleles in 2 independent cohorts of male patients (994 from Chile and 2392 from Australia) referred for FXS testing from 2006 to 2013. All MS-QMA-positive cases were retested with commercial triplet primed PCR, methylation-sensitive Southern blot, and a methylation-specific EpiTYPER-based test. RESULTS:All 38 FMs detected with the standard 2-step protocol were detected with MS-QMA. However, MS-QMA identified methylation mosaicism in an additional 15% and 11% of patients in the Chilean and Australian cohorts, respectively, suggesting the presence of a cryptic FM. Of these additional patients, 57% were confirmed to carry cryptic expanded alleles in blood, buccal mucosa, or saliva samples. Further confirmation was provided by identifying premutation (CGG 55-199) alleles in mothers of probands with methylation-sensitive Southern blot. Neurocognitive assessments showed that low-level mosaicism for cryptic FM alleles was associated with cognitive impairment or autism. CONCLUSIONS:A substantial number of mosaic FM males who have cognitive impairment or autism are not diagnosed with the currently recommended 2-step testing protocol and can be identified with MS-QMA as a first-line test.

journal_name

Clin Chem

journal_title

Clinical chemistry

authors

Aliaga SM,Slater HR,Francis D,Du Sart D,Li X,Amor DJ,Alliende AM,Santa Maria L,Faundes V,Morales P,Trigo C,Salas I,Curotto B,Godler DE

doi

10.1373/clinchem.2015.244681

subject

Has Abstract

pub_date

2016-02-01 00:00:00

pages

343-52

issue

2

eissn

0009-9147

issn

1530-8561

pii

clinchem.2015.244681

journal_volume

62

pub_type

杂志文章
  • Relative increase in creatine kinase MB isoenzyme during reperfusion after myocardial infarction is method dependent.

    abstract::We compared relative increases in creatine kinase (EC 2.7.3.2) MB isoenzyme (CK-MB) after reperfusion in myocardial infarction for four popular methods: electrophoresis, immunoinhibition, the "Magic Lite" (Ciba-Corning) system, and the Stratus (Dade). In a method comparison study, we confirmed that all four methods co...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Christenson RH,Clemmensen P,Ohman EM,Toffaletti J,Silverman LM,Grande P,Vollmer RT,Wagner GS

    更新日期:1990-08-01 00:00:00

  • Quantification of urinary oxalate with oxalate oxidase from beet stems.

    abstract::We describe an automated (ABA-100) enzymic method for determination of urinary oxalate by use of oxalate oxidase (EC 1.2.3.4) isolated from beet stems. The H2O2 produced by the oxidation of oxalate by oxalate oxidase is measured by coupling with oxidation and conjugation of 3-methyl-3-benzothiazolinone hydrazone with ...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Obzansky DM,Richardson KE

    更新日期:1983-10-01 00:00:00

  • Growth hormone (GH) receptor isoform in acromegaly: lower concentrations of GH but not insulin-like growth factor-1 in patients with a genomic deletion of exon 3 in the GH receptor gene.

    abstract:BACKGROUND:A genomic deletion of exon 3 (d3-GHR) of the growth hormone (GH) receptor (GHR) has been linked to the effectiveness of GH therapy in children with GH deficiency. Carriers of the d3-GHR genotype had higher GH-induced growth rates than children homozygous for the full-length (fl)-GHR. The aim of this study wa...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2007.085712

    authors: Schmid C,Krayenbuehl PA,Bernays RL,Zwimpfer C,Maly FE,Wiesli P

    更新日期:2007-08-01 00:00:00

  • Nanofluidic digital PCR for KRAS mutation detection and quantification in gastrointestinal cancer.

    abstract:BACKGROUND:Concomitant quantification of multiple mutant KRAS (v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog) alleles may provide information in addition to that provided by standard mutation-detection procedures. We assessed the feasibility of a nanofluidic digital PCR array platform to detect and quantify KRAS...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2012.186577

    authors: Azuara D,Ginesta MM,Gausachs M,Rodriguez-Moranta F,Fabregat J,Busquets J,Pelaez N,Boadas J,Galter S,Moreno V,Costa J,de Oca J,Capellá G

    更新日期:2012-09-01 00:00:00

  • Detecting minimal residual disease in neuroblastoma: the superiority of a panel of real-time quantitative PCR markers.

    abstract:BACKGROUND:PCR-based detection of minimal residual disease (MRD) in neuroblastoma (NB) patients can be used for initial staging and monitoring therapy response in bone marrow (BM) and peripheral blood (PB). PHOX2B has been identified as a sensitive and specific MRD marker; however, its expression varies between tumors....

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2008.117945

    authors: Stutterheim J,Gerritsen A,Zappeij-Kannegieter L,Yalcin B,Dee R,van Noesel MM,Berthold F,Versteeg R,Caron HN,van der Schoot CE,Tytgat GA

    更新日期:2009-07-01 00:00:00

  • Analytical performance of 4 automated assays for measurement of cystatin C.

    abstract:BACKGROUND:We evaluated the analytical performance of 4 cystatin C assays (Siemens N Latex on BNII, Roche Tina-quant on Cobas c501, Genzyme on Cobas c501, and Tosoh ST AIA-PACK on Tosoh AIA-600II) according to guidelines published by the Clinical and Laboratory Standards Institute. METHODS:We evaluated total imprecisi...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2009.141531

    authors: Li J,Dunn W,Breaud A,Elliott D,Sokoll LJ,Clarke W

    更新日期:2010-08-01 00:00:00

  • Simplified micro-scale procedure for preparing samples for theophylline determination by liquid chromatography.

    abstract::We describe an improved procedure for the preparation of plasma or serum for determination of theophylline by reverse phase high-performance liquid chromatography. Quantitative results are available in less than 30 min from receipt of sample. The chromatogram is complete in 8 to 16 min, which includes the use of an in...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Nelson JW,Cordry AL,Aron CG,Bartell RA

    更新日期:1977-01-01 00:00:00

  • Cardiac troponin T predicts long-term outcomes in hemodialysis patients.

    abstract:BACKGROUND:Increased plasma troponin T (cTnT), but not troponin I (cTnI), is frequently observed in end-stage renal failure patients. Although generally considered spurious, we previously reported an associated increased mortality at 12 months. METHODS:We studied long-term outcomes in 244 patients on chronic hemodialy...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Ooi DS,Zimmerman D,Graham J,Wells GA

    更新日期:2001-03-01 00:00:00

  • Use of a cholesterol-rich bovine lipoprotein to enhance cholesterol concentrations in the preparation of serum control materials.

    abstract::We describe a process for preparing a cholesterol-rich lipoprotein extract from bovine serum. The material is used to enhance cholestrol concentration up to 3.5 g/liter in a clear control material from human serum. The optical clarity of the enriched serum is only slightly affected by lyophilization and reconstitution...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Proksch GJ,Bonderman DP

    更新日期:1976-08-01 00:00:00

  • Evaluation of "HemoCue," a new device for determining hemoglobin.

    abstract::Hemoglobinometry according to the International Committee of Standardization in Hematology (ICSH) suffers from imprecision related to high sample dilution and from potential errors owing to sample turbidity. We have evaluated a new instrument, "HemoCue," that measures hemoglobin at two wavelengths as azide methemoglob...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: von Schenck H,Falkensson M,Lundberg B

    更新日期:1986-03-01 00:00:00

  • Continuous-flow (Autoanalyzer I) analysis for plasma thiocyanate as an index to tobacco smoking.

    abstract::We describe a procedure for determining thiocyanate in plasma with a Technicon AutoAnalyzer I, modified with a 50-mm tubular flow cell to increase the sensitivity of thiocyanate detection. The procedure is suitable for distinguishing cigarette smokers from non-smokers, the mean for smokers being 151 (SD 43) micromol/L...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Dalferes ER Jr,Webber LS,Radhakrishnamurthy B,Berenson GS

    更新日期:1980-03-01 00:00:00

  • Differential reactivity of two homogeneous LDL-cholesterol methods to LDL and VLDL subfractions, as demonstrated by ultracentrifugation and HPLC.

    abstract:BACKGROUND:The analytical and clinical performance of homogeneous LDL-cholesterol assays has been reported, but their reactions with subfractions of LDL and VLDL have not been described in detail. METHODS:We evaluated reaction selectivity of two homogeneous LDL-cholesterol assays, LDLk (Kyowa Medex) and LDLd (Daiichi ...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Usui S,Kakuuchi H,Okamoto M,Mizukami Y,Okazaki M

    更新日期:2002-11-01 00:00:00

  • Alkaline phosphatase isoenzymes in the plasma of preterm and term infants: serial measurements and clinical correlations.

    abstract::Serial measurements of the bone and fetal intestinal isoenzymes of alkaline phosphatase (EC 3.1.3.1) in the plasma of 43 term and 43 preterm infants, from birth to six weeks later, indicate that the bone isoenzyme gradually increases over this period in both preterm and term infants fed with unsupplemented commercial ...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Crofton PM,Hume R

    更新日期:1987-10-01 00:00:00

  • Copy number and expression alterations of miRNAs in the ovarian cancer cell line OVCAR-3: impact on kallikrein 6 protein expression.

    abstract:BACKGROUND:Kallikrein-related peptidase 6 (KLK6), a member of the serine protease family of kallikrein (KLK) genes, is dysregulated in ovarian carcinomas (OCa) and its overexpression is associated with poor prognosis. Regulation of its expression is poorly understood and is likely to be influenced by multiple mechanism...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2012.193060

    authors: Bayani J,Kuzmanov U,Saraon P,Fung WA,Soosaipillai A,Squire JA,Diamandis EP

    更新日期:2013-01-01 00:00:00

  • Bioinformatics for clinical next generation sequencing.

    abstract:BACKGROUND:Next generation sequencing (NGS)-based assays continue to redefine the field of genetic testing. Owing to the complexity of the data, bioinformatics has become a necessary component in any laboratory implementing a clinical NGS test. CONTENT:The computational components of an NGS-based work flow can be conc...

    journal_title:Clinical chemistry

    pub_type: 杂志文章,评审

    doi:10.1373/clinchem.2014.224360

    authors: Oliver GR,Hart SN,Klee EW

    更新日期:2015-01-01 00:00:00

  • Plasma F2-isoprostanes and coronary artery calcification: the CARDIA Study.

    abstract:BACKGROUND:Oxidation of lipids in lipoproteins and cells may initiate and enhance the early development of cardiovascular disease. METHOD AND RESULTS:We assayed F(2)-isoprostanes, oxidation products of arachidonic acid, by gas chromatography-mass spectrometry in a biracial cohort of 2850 young healthy adult men and wo...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2004.037630

    authors: Gross M,Steffes M,Jacobs DR Jr,Yu X,Lewis L,Lewis CE,Loria CM

    更新日期:2005-01-01 00:00:00

  • Ultracentrifugation in swinging-bucket and fixed-angle rotors evaluated for isolation and determination of high-density lipoprotein subfractions HDL2 and HDL3.

    abstract::We evaluated the density-gradient ultracentrifugation method in a swinging-bucket rotor (Anal Biochem 111, 149-157, 1981) in a slightly modified version for isolation and determination of high-density lipoprotein (HDL) subfractions. We prestained the serum with Coomassie Brilliant Blue R, which did not change the hydr...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Demacker PN,van Sommeren-Zondag DF,Stalenhoef AF,Stuyt PM,van't Laar A

    更新日期:1983-04-01 00:00:00

  • Direct determination of free thyroxin in undiluted serum by equilibrium dialysis/radioimmunoassay.

    abstract::We have designed a re-usable dialysis cell and a complex dialysis buffer, with which undiluted serum samples can be dialyzed with minimal changes in their serum matrix. Dialysate thyroxin (free T4) is then measured by a sensitive RIA for T4. The range of reportability was 2-128 ng/L, the normal range was 8-27 ng/L, an...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Nelson JC,Tomei RT

    更新日期:1988-09-01 00:00:00

  • Development of a multichannel electrochemical centrifugal analyzer.

    abstract::A new instrument has been developed that is similar in design and concept to the GeMSAEC centrifugal analyzer (Oak Ridge National Laboratory) except that electrochemical detection is used rather than optical detection. The present version has eight channels, each with its own detector. Problems of speed control and sa...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Cho HK,Lee YH,Couch RA,Jagadeesh JM,Olson CL

    更新日期:1982-09-01 00:00:00

  • Improved method for measurement of inorganic phosphate in serum with a centrifugal analyzer.

    abstract::A direct mehtod [Clin. Chim. Acta 46, 113 (1973)] for determination of inorganic phosphate in serum was adapted for use with a centrifugal analyzer. Contamination is minimized and analysis rate maximized by doing the reaction in the reagent wells of the transfer disc and by utilizing the high-speed spectrophotometric ...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Wentz PW,Savory J,Cross RE

    更新日期:1976-02-01 00:00:00

  • Assay for erythrocyte uroporphyrinogen I synthase activity, with porphobilinogen as substrate.

    abstract::We describe a convenient, economical procedure for measuring uroporphyrinogen I synthase (EC 4.3 1.8) activity in erythrocytes, the results of which can be used to diagnose acute intermittent porphyria, in either its latent or acute stage. By limiting the test reaction sequence to the conversion of porphobilinogen to ...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Ford RE,Ou CN,Ellefson RD

    更新日期:1980-07-01 00:00:00

  • High urinary concentrations of activin A in asphyxiated full-term newborns with moderate or severe hypoxic ischemic encephalopathy.

    abstract:BACKGROUND:Hypoxic ischemic encephalopathy (HIE) is a major cause of permanent neurological disabilities in full-term newborns. We measured activin A in urine collected immediately after birth in asphyxiated full-term newborns, and assessed the ability of the measurements to predict the occurrence of perinatal encephal...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2005.062604

    authors: Florio P,Luisi S,Moataza B,Torricelli M,Iman I,Hala M,Hanna A,Petraglia F,Gazzolo D

    更新日期:2007-03-01 00:00:00

  • Enzymatic measurement of creatine in erythrocytes.

    abstract::We describe an automated enzymatic procedure for quantifying creatine in erythrocytes. In this assay, after sample clean-up, creatine kinase (CK; EC 2.7.3.2) and pyruvate kinase (EC 2.1.7.40) are used as auxiliary enzymes; lactate dehydrogenase (EC 1.1.1.27) is used in the indicator reaction. CK is also used as the st...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Beyer C,Alting IH

    更新日期:1996-02-01 00:00:00

  • B-type natriuretic peptide forms within the heart, coronary sinus, and peripheral circulation in humans: evidence for degradation before secretion.

    abstract:BACKGROUND:The B-type natriuretic peptides (BNP and N-terminal pro-BNP) are secreted by the heart and, in the case of BNP, serve to maintain circulatory homeostasis through renal and vascular actions and oppose many effects of the renin-angiotensin system. Recent evidence suggests that in patients with severe heart fai...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2013.210435

    authors: Mahagamasekera PG,Ruygrok PN,Palmer SC,Richards AM,Ansell GS,Nicholls MG,Pemberton CJ,Lewis LK,Yandle TG

    更新日期:2014-03-01 00:00:00

  • Isoelectric focusing in agarose: classification of genetic variants of alpha 1-antitrypsin.

    abstract::Polyacrylamide has been the matrix of choice for isoelectric focusing owing to the virtual absence of electroendosmosis in this medium. Certain inherent limitations associated with polyacrylamide have prompted some investigators to use low-electroendosmosis agarose for isoelectric focusing, but with limited success th...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Buffone GJ,Stennis BJ,Schimbor CM

    更新日期:1983-02-01 00:00:00

  • Short- and long-term risk stratification using a next-generation, high-sensitivity research cardiac troponin I (hs-cTnI) assay in an emergency department chest pain population.

    abstract:BACKGROUND:The next-generation, high-sensitivity cardiac troponin assays can measure quantifiable concentrations of cTn in a majority of individuals, but there are few studies assessing these assays for risk stratification. The present study was undertaken to determine if a research hs-cTnI assay can be useful for pred...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2009.127241

    authors: Kavsak PA,Wang X,Ko DT,MacRae AR,Jaffe AS

    更新日期:2009-10-01 00:00:00

  • Determination of shelf life and activation energy for tumor necrosis factor-alpha in cerebrospinal fluid samples.

    abstract::The cytokine rumor necrosis factor-alpha (TNF-alpha) plays a prominent role in the inflammatory response and has been quantified in several kinds of body fluids. A safe method for keeping samples under the best storage conditions for later studies is clearly needed. We estimated TNF-alpha shelf life by using an accele...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Cruz Ruiz M,Recio Quijano F,López Cortés LF,Hebles Duvison M,Vázquez Rubio R

    更新日期:1996-05-01 00:00:00

  • Association between the UGT1A1 TA-repeat polymorphism and bilirubin concentration in patients with intermittent claudication: results from the CAVASIC study.

    abstract:BACKGROUND:Bilirubin has antioxidative and cytoprotective properties. Low plasma concentrations of bilirubin are reportedly associated with the development of coronary and cerebrovascular disease, and bilirubin concentrations are strongly correlated with the enzyme activity of the hepatic uridine diphosphate glucuronos...

    journal_title:Clinical chemistry

    pub_type: 临床试验,杂志文章

    doi:10.1373/clinchem.2007.102046

    authors: Rantner B,Kollerits B,Anderwald-Stadler M,Klein-Weigel P,Gruber I,Gehringer A,Haak M,Schnapka-Köpf M,Fraedrich G,Kronenberg F

    更新日期:2008-05-01 00:00:00

  • Age-specific distribution of plasma amino acid concentrations in a healthy pediatric population.

    abstract::Reference values were determined for 23 plasma free amino acids from measurements done in 148 healthy children ranging from 0 to 18 years of age. Amino acid analysis was performed by ion-exchange chromatography. We propose a graphic form of presenting the age-specific distribution of plasma amino acid concentrations w...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:

    authors: Lepage N,McDonald N,Dallaire L,Lambert M

    更新日期:1997-12-01 00:00:00

  • Protease inhibitor-associated dyslipidemia in HIV-infected patients is strongly influenced by the APOA5-1131T->C gene variation.

    abstract:BACKGROUND:Hyperlipidemia associated with the protease inhibitor (PI) component of highly active antiretrovial treatment can lead to accelerated atherosclerosis. The apolipoprotein A-V (APOA5) gene, which affects VLDL production and lipolysis, may play a role in PI-induced hyperlipidemia, particularly in individuals wi...

    journal_title:Clinical chemistry

    pub_type: 杂志文章

    doi:10.1373/clinchem.2006.069583

    authors: Guardiola M,Ferré R,Salazar J,Alonso-Villaverde C,Coll B,Parra S,Masana L,Ribalta J

    更新日期:2006-10-01 00:00:00