Abstract：
:Although next-generation sequencing (NGS) technology has enabled the decoding of many crop species genomes, most of the underlying genetic components for economically important crop traits remain to be determined. Network approaches have proven useful for the study of the reference plant, Arabidopsis thaliana, and the success of network-based crop genetics will also require the availability of a genome-scale functional networks for crop species. In this review, we discuss how to construct functional networks and elucidate the holistic view of a crop system. The crop gene network then can be used for gene prioritization and the analysis of resequencing-based genome-wide association study (GWAS) data, the amount of which will rapidly grow in the field of crop science in the coming years.
journal_name
Curr Opin Plant Bioljournal_title
Current opinion in plant biologyauthors
Lee T,Kim H,Lee Idoi
10.1016/j.pbi.2015.02.001subject
Has Abstractpub_date
2015-04-01 00:00:00pages
61-70eissn
1369-5266issn
1879-0356pii
S1369-5266(15)00021-7journal_volume
24pub_type
杂志文章,评审abstract：:Plant cells sense, weigh and integrate various endogenous and exogenous cues in order to optimize acclimation and resource allocation. The thiol/disulfide redox network appears to be in the core of this versatile integration process. In plant cells its complexity exceeds by far that of other organisms. Recent research...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2011.12.002
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abstract：:Polyploidy, or whole-genome duplication (WGD), is a ubiquitous feature of plant genomes, contributing to variation in both genome size and gene content. Although polyploidy has occurred in all major clades of land plants, it is most frequent in angiosperms. Following a WGD in the common ancestor of all extant angiospe...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
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abstract：:Nitrogen (N) and Phosphorus (P) are the two most essential nutrients ensuring food production and security. The ever growing population demands more N and P-based fertilizers. Even though the N provision to the agricultural system is virtually infinite (Haber and Bosch process) it triggers pollution when it is not use...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2020.07.002
更新日期：2020-10-01 00:00:00
abstract：:Primary metabolism in plants is tightly regulated by environmental factors such as light and nutrient availability at multiple levels. The circadian clock is a self-sustained endogenous oscillator that enables organisms to predict daily and seasonal changes. The regulation of primary metabolism by the circadian clock ...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2012.01.013
更新日期：2012-06-01 00:00:00
abstract：:The plant cell wall provides form and integrity to the cell as well as a dynamic interface between a cell and its environment. Therefore mechanisms capable of policing changes in the cell wall, signaling cellular responses including those that would feedback regulate cell wall properties are expected to play important...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2011.09.001
更新日期：2011-12-01 00:00:00
abstract：:Developing new genotypes of plants is one of the key options for adaptation of agriculture to climate change. Plants may be required to provide resilience in changed climates or support the migration of agriculture to new regions. Very different genotypes may be required to perform in the modified environments of prot...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
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更新日期：2020-08-01 00:00:00
abstract：:The size of plant cells is determined by genetic, structural and physical factors as well as by internal and external signals. Our knowledge of the molecular mechanisms of these controls is still rudimentary. Recent studies indicate that ploidy level exerts an important control on cell size. By increasing ploidy, endo...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(00)00118-7
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journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(02)00257-1
更新日期：2002-06-01 00:00:00
abstract：:Bacterial pathogens have co-evolved with their hosts in their ongoing quest for advantage in the resulting interaction. These intimate associations have resulted in remarkable adaptations of prokaryotic virulence proteins and their eukaryotic molecular targets. An important strategy used by microbial pathogens of anim...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2006.05.005
更新日期：2006-08-01 00:00:00
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journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2018.06.004
更新日期：2018-12-01 00:00:00
abstract：:The pollen grain and the pollen tube that grows from it are complex entities which must respond to a diverse array of signals to carry out their roles in sexual reproduction. Research is beginning to reveal the nature both of the signals and of the signal transduction machinery that converts these signals into directi...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(99)00015-1
更新日期：1999-10-01 00:00:00
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journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2009.09.018
更新日期：2010-02-01 00:00:00
abstract：:Completion of the genomic sequencing of rice has enhanced the discovery of new genes. Wild rice relatives are good sources for extending the genetic variation of cultivated rice. Reproductive barriers are commonly found in distant crosses of rice and are attracting attention. The combination of genetic analyses and mo...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2008.01.008
更新日期：2008-04-01 00:00:00
abstract：:The regulation of plant metabolic processes in response to environmental and developmental signals is a complex interaction between optimization of enzyme activity and transcriptional regulation of gene expression. Through painstaking efforts over more than 50 years, many metabolic pathways in plants have been charact...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(03)00040-2
更新日期：2003-06-01 00:00:00
abstract：:Thousands of sieve tube exudate proteins (STEP) have now been identified and predicted to fulfill a diversity of functions. However, most STEPs should be considered putative, since methods to collect sieve tube exudates have many technical drawbacks, and advanced functional characterization will be required to disting...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2018.04.008
更新日期：2018-06-01 00:00:00
abstract：:Karrikins are butenolides in smoke and char that stimulate seed germination. Karrikin action in Arabidopsis requires the F-box protein MAX2 and the α/β-hydrolase KAI2, a paralogue of D14 that is required for perception of strigolactones (SL). SL response involves hydrolysis by D14, whereas karrikins bind to KAI2 witho...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2013.07.005
更新日期：2013-10-01 00:00:00
abstract：:Photorespiration is a Janus-headed metabolic process: it makes oxygenic photosynthesis possible by scavenging its major toxic by-product, 2-phosphoglycolate, but also leads to high losses of freshly assimilated CO(2) from most land plants. Photorespiration has been often classified as a wasteful process but is now inc...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2012.01.008
更新日期：2012-06-01 00:00:00
abstract：:Changes in gene expression during systemic acquired resistance (SAR) require the phenolic signaling molecule salicylic acid (SA) and are modulated by the interaction between the NON EXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) protein and members of the TGA family of transcription factors. In the past two years, th...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2005.05.003
更新日期：2005-08-01 00:00:00
abstract：:Fertilization is an important life event for sexually reproductive plants. Part of this process involves precise regulation of a series of complicated cell-cell communications between male and female tissues. Through genetic and omics approaches, many genes and proteins involved in this process have been identified. H...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2015.10.006
更新日期：2015-12-01 00:00:00
abstract：:Asymmetric cell divisions (ACDs) are used to create organismal form and cellular diversity during plant development. In several embryonic and postembryonic contexts, genes that specify cell fates and networks that provide positional information have been identified. The cellular mechanisms that translate this informat...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2010.09.016
更新日期：2010-12-01 00:00:00
abstract：:Recent studies on the differential expression of genes associated with leaf senescence support the long-standing interpretation of plant senescence as an organized, genetically controlled process. Sequence identities of genes that are differentially expressed in senescing leaves indicate roles in the salvage of nutrie...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(98)80131-3
更新日期：1998-02-01 00:00:00
abstract：:Specific subsets of microbes are capable of assembly into plant-associated communities that influence the fitness of both the host and the microbes. While there is a large spectrum of plant phenotypes cause by microbes, the microbial community members benefit from living in protected and nutrient rich plant-associated...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2015.02.004
更新日期：2015-04-01 00:00:00
abstract：:The interaction of microbes with "signature" plants is largely governed by secreted effector proteins, which serve to dampen plant defense responses and modulate host cell processes. Secreted effectors can function either in the apoplast or within plant cell compartments. How oomycetes and fungi translocate their effe...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2017.04.005
更新日期：2017-08-01 00:00:00
abstract：:The sessile nature of plants has caused plants to develop means to defend themselves against attacking organisms. Multiple strategies range from physical barriers to chemical warfare including pre-formed anticipins as well as phytoalexins produced only upon attack. While phytoalexins require rapid induction, constitut...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2017.04.009
更新日期：2017-08-01 00:00:00
abstract：:Chemistry assigns phosphate (Pi) dominant roles in metabolism; however, it also renders the macronutrient a genuinely limiting factor of plant productivity. Pi bioavailability is restricted by low Pi mobility in soil and antagonized by metallic toxicities, which force roots to actively seek and selectively acquire the...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2017.04.016
更新日期：2017-10-01 00:00:00
abstract：:Plant diseases threaten global food security and biodiversity. Rapid dispersal of pathogens particularly via human means has accelerated in recent years. Timely detection of plant pathogens is essential to limit their spread. At the same time, international regulations must keep abreast of advances in plant disease di...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2020.04.011
更新日期：2020-08-01 00:00:00
abstract：:The plant hormones salicylic acid (SA), jasmonic acid (JA), and ethylene (ET) are major players in the regulation of signaling networks that are involved in induced defense responses against pathogens and insects. During the past two years, significant progress has been made in understanding the function of NON-EXPRES...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2004.05.006
更新日期：2004-08-01 00:00:00
abstract：:In the last two decades, work on auxin signaling has helped to understand many aspects of the fundamental process underlying the specification of tissue types in the plant embryo. However, the immediate steps after fertilization including the polarization of the zygote and the initial body axis formation remained poor...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2019.10.002
更新日期：2020-02-01 00:00:00
abstract：:Quantification of genotype-to-phenotype associations is central to many scientific investigations, yet the ability to obtain consistent results may be thwarted without appropriate statistical analyses. Models for association can consider confounding effects in the materials and complex genetic interactions. Selecting ...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2015.02.010
更新日期：2015-04-01 00:00:00
abstract：:Among plant-microbe interactions, root nodule symbiosis is one of the most important beneficial interactions providing legume plants with nitrogenous compounds. Over the past years a number of genes required for root nodule symbiosis has been identified but most recently great advances have been made to dissect signal...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2011.03.016
更新日期：2011-08-01 00:00:00
