Abstract：
:Quantification of genotype-to-phenotype associations is central to many scientific investigations, yet the ability to obtain consistent results may be thwarted without appropriate statistical analyses. Models for association can consider confounding effects in the materials and complex genetic interactions. Selecting optimal models enables accurate evaluation of associations between marker loci and numerous phenotypes including gene expression. Significant improvements in QTL discovery via association mapping and acceleration of breeding cycles through genomic selection are two successful applications of models using genome-wide markers. Given recent advances in genotyping and phenotyping technologies, further refinement of these approaches is needed to model genetic architecture more accurately and run analyses in a computationally efficient manner, all while accounting for false positives and maximizing statistical power.
journal_name
Curr Opin Plant Bioljournal_title
Current opinion in plant biologyauthors
Lipka AE,Kandianis CB,Hudson ME,Yu J,Drnevich J,Bradbury PJ,Gore MAdoi
10.1016/j.pbi.2015.02.010subject
Has Abstractpub_date
2015-04-01 00:00:00pages
110-8eissn
1369-5266issn
1879-0356pii
S1369-5266(15)00030-8journal_volume
24pub_type
杂志文章,评审abstract：:Endogenous peptide ligand-receptor systems regulate cell-cell communications in various developmental processes in plants. Recent studies have revealed that the peptide-receptor combinations are not simply one-on-one with single roles. One peptide activates multiple downstream signaling through different receptors, wh...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2014.07.011
更新日期：2014-10-01 00:00:00
abstract：:Chemistry assigns phosphate (Pi) dominant roles in metabolism; however, it also renders the macronutrient a genuinely limiting factor of plant productivity. Pi bioavailability is restricted by low Pi mobility in soil and antagonized by metallic toxicities, which force roots to actively seek and selectively acquire the...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2017.04.016
更新日期：2017-10-01 00:00:00
abstract：:Flooding is one of the most hazardous natural disasters, and there are several levels of flooding. Recently, research on flood-tolerant rice plants revealed that some rice varieties have evolved to overcome two different flood types, 'flash flood' and 'deepwater flood', using two different mechanisms, and their molecu...
journal_title：Current opinion in plant biology
pub_type： 杂志文章
doi：10.1016/j.pbi.2010.09.008
更新日期：2011-02-01 00:00:00
abstract：:Members of the Acanthaceae, Apocynaceae, Bignoniaceae, Caprifoliaceae, Gentianaceae, Labiatae, Lamiaceae, Loasaceae, Loganiaceae, Oleaceae, Plantaginaceae, Rubiaceae, Saxifragaceae, Scrophulariaceae, Valerianaceae, and Verbenaceae plant families are well known to accumulate thousands of bioactive iridoids/secoiridoids...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2014.03.006
更新日期：2014-06-01 00:00:00
abstract：:Embryogenesis is a critical stage of the sporophytic life cycle during which the basic body plan of the plant is established. Although positional information is implicated to play a major role in determining embryo cell fate, little is known about the nature of positional signals. Recent studies show that the monopter...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(99)80005-3
更新日期：1999-02-01 00:00:00
abstract：:Growth of fungal hyphae is guided by a variety of chemical gradients, including nutrients, mating pheromones or host compounds. Over 100 years after chemotropism was first reported in fungus-plant interactions, our knowledge on the host signals, fungal receptors and cellular pathways is still rudimentary. Genetic anal...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2015.07.004
更新日期：2015-08-01 00:00:00
abstract：:Recent advances in DNA targeting allow unprecedented control over gene function and expression. Targeting based on TAL effectors is arguably the most promising for systems biology and metabolic engineering. Multiple, orthogonal TAL-effector reagents of different types can be used in the same cell. Furthermore, variati...
journal_title：Current opinion in plant biology
pub_type： 杂志文章
doi：10.1016/j.pbi.2014.05.007
更新日期：2014-06-01 00:00:00
abstract：:Imprinting occurs in the endosperm of flowering plants. The endosperm, a product of central cell fertilization, is critical for embryo and seed development. Imprinting in the endosperm is mainly due to the inherited differences in gamete epigenetic composition. Studies have also shown that there are differences in gen...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2011.02.006
更新日期：2011-04-01 00:00:00
abstract：:Systemic acquired resistance (SAR) is a type of pathogen-induced broad-spectrum resistance in plants. During SAR, primary infection-induced rapid generation and transportation of mobile signal(s) 'prepare' the rest of the plant for subsequent infections. Several, seemingly unrelated, mobile chemical inducers of SAR ha...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2013.06.019
更新日期：2013-08-01 00:00:00
abstract：:Linalool (3,7-dimethyl-1,6-octadien-3-ol) is a common floral volatile with two distinct enantiomers and related metabolites involved in the full spectrum of plant-pollinator interactions. Recent studies reveal a complex interplay between pollinator attraction and plant defense mediated by linalool and its derivatives,...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2016.05.007
更新日期：2016-08-01 00:00:00
abstract：:Plants have evolved specialized vascular tissues for the distribution of energy, water, nutrients, and for communication. The phloem transports sugars from photosynthetic source regions (e.g. mature leaves) to sugar sinks (e.g. developing tissues such as buds, flowers, roots). Moreover, chemical signals such as hormon...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2018.03.005
更新日期：2018-06-01 00:00:00
abstract：:Anthocyanins and proanthocyanidins are among the most numerous and widely distributed pigments in land plants. Given that these pigments are the valuable compounds, as stress protectants and health-promoting components because of their potent antioxidant activity, several metabolic engineering approaches focusing on t...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2020.04.001
更新日期：2020-06-01 00:00:00
abstract：:In the past year progress has been made in the manipulation of phenylpropanoid metabolism but several studies highlight gaps in our understanding of the biochemistry of these pathways. New components involved in transcriptional regulation of phenylpropanoid genes have been identified, including transcription factors a...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(98)80113-1
更新日期：1998-06-01 00:00:00
abstract：:Small RNA (sRNA) induces RNA interference (RNAi) in almost all eukaryotes. While sRNAs can move within an organism, they can also move between interacting organisms to induce gene silencing, a phenomenon called 'cross-kingdom RNAi'. Some sRNAs from pathogens or pests move into host cells and suppress host immunity in...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2017.05.003
更新日期：2017-08-01 00:00:00
abstract：:Double fertilization in flowering seed plants requires intercellular signaling events between many interacting partners. The four cell types of the seven-celled female gametophyte communicate with each other to establish and maintain their identity. They secrete signaling molecules to guide the male gametophyte and to...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2005.11.002
更新日期：2006-02-01 00:00:00
abstract：:The accumulation of a given element is a complex process controlled by a network of gene products critical for uptake, binding, transportation, and sequestration. Many of these genes and physiological processes affect more than one element. Therefore, to understand how elements are regulated, it is necessary to measur...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2009.05.002
更新日期：2009-06-01 00:00:00
abstract：:During the past year, significant advances have been made in our understanding of stomatal development and its response to climate change, and in our knowledge of how guard cell Ca(2+) oscillations encode environmental signals. Recent studies on (de)phosphorylation mechanisms have provided new information on how guard...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(00)00195-3
更新日期：2001-10-01 00:00:00
abstract：:Plants have the ability to generate different and new organs throughout their life cycle. Organ growth is mostly determined by the combinatory effects of cell proliferation and cell expansion. Still, organ size and shape are adjusted constantly by environmental conditions and developmental timing. The plasticity of pl...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2016.10.003
更新日期：2016-12-01 00:00:00
abstract：:Molecular and genomic studies have shown that several genes with various functions are induced by drought and cold stresses, and that various transcription factors are involved in the regulation of stress-inducible genes. The products of stress-inducible genes function not only in stress tolerance but also in stress r...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(03)00092-x
更新日期：2003-10-01 00:00:00
abstract：:Bacterial pathogens continue to pose a major threat to economically important plant resources. Disease outbreaks can occur through rapid evolution of a pathogen to overcome host defences. The advent of genome sequencing, especially next-generation technologies, has seen a revolution in the study of plant pathogen evol...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2011.03.001
更新日期：2011-08-01 00:00:00
abstract：:Recent studies in yeast, animals and plants have provided major breakthroughs in unraveling the molecular mechanism of higher-order gene regulation. In conjunction with the DNA code, proteins that are involved in chromatin remodeling, histone modification and epigenetic imprinting form a large network of interactions ...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(02)00298-4
更新日期：2002-12-01 00:00:00
abstract：:Transcription factors (TFs) are a group of proteins that control cellular processes by regulating the expression of downstream target genes. Recent progress has been made in the cloning and characterization of Arabidopsis TFs on the genome scale, especially on the cloning of open reading frames (ORFs), sequence analys...
journal_title：Current opinion in plant biology
pub_type： 杂志文章
doi：10.1016/j.pbi.2006.07.005
更新日期：2006-10-01 00:00:00
abstract：:Phytohormone gibberellins (GA) are a large family of tetracyclic diterpenoids and play the important roles in modulation of plant growth and development throughout the plant life cycle. GA depresses its signaling by the GA-promoted destabilization of the DELLA protein growth repressors via 26S proteasome pathway. Rece...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2007.08.011
更新日期：2007-10-01 00:00:00
abstract：:Mitogen-activated protein kinases (MAPKs) link information transfer from external stimuli-activated sensors to cellular responses. The completed Arabidopsis genome sequence revealed an extraordinary complexity in MAPK-signalling components in plants. Information obtained from Arabidopsis provides a framework for a uni...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(02)00285-6
更新日期：2002-10-01 00:00:00
abstract：:Meristems are centers of cell proliferation with a defined internal structure that is dynamically perpetuated throughout a plant's life although its constituent cells constantly change. When progressing from stem cell state towards differentiation, individual cells adopt developmental programs according to their curre...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2013.11.011
更新日期：2014-02-01 00:00:00
abstract：:Successful penetration of living plant tissue by fungal pathogens is preceded by an exchange of signals between both organisms. Recent mutational approaches revealed the importance of cAMP-dependent signalling pathways for fungal development and virulence on their hosts. ...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/1369-5266(88)80054-2
更新日期：1998-08-01 00:00:00
abstract：:Asymmetric cell divisions (ACDs) are used to create organismal form and cellular diversity during plant development. In several embryonic and postembryonic contexts, genes that specify cell fates and networks that provide positional information have been identified. The cellular mechanisms that translate this informat...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2010.09.016
更新日期：2010-12-01 00:00:00
abstract：:The activity of cyclin-dependent kinases (CDKs) on specific targets mediates the temporal regulation of plant cell cycle transitions. The sequential activity of CDKs and the spatial regulation of cell proliferation during plant development, however, are still poorly understood. Understanding these aspects depends on t...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/s1369-5266(98)80041-1
更新日期：1998-12-01 00:00:00
abstract：:A large proportion of the genes in any plant genome encode enzymes of primary and specialized (secondary) metabolism. Not all plant primary metabolites, those that are found in all or most species, have been identified. Moreover, only a small portion of the estimated hundreds of thousand specialized metabolites, those...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2005.03.004
更新日期：2005-06-01 00:00:00
abstract：:Variation in grass architecture profoundly affects light capture, competition, and reproductive success, and is responsive to environmental factors such as crowding and nutrient limitation. Recent work in both model and crop systems has uncovered many aspects of the genetic control of branching, including conservation...
journal_title：Current opinion in plant biology
pub_type： 杂志文章,评审
doi：10.1016/j.pbi.2006.11.015
更新日期：2007-02-01 00:00:00
