Genetic variation in rice.

Abstract:

:Completion of the genomic sequencing of rice has enhanced the discovery of new genes. Wild rice relatives are good sources for extending the genetic variation of cultivated rice. Reproductive barriers are commonly found in distant crosses of rice and are attracting attention. The combination of genetic analyses and molecular tools has greatly facilitated the molecular cloning of rice genes based on the classical approach and enabled the tracking of dissemination of the alleles for domestication. Basic information for population genetics study in rice is still being collected and is expected to provide an alternative approach for finding new genes. The wide genetic variation available in wild rice relatives and the combination of various genetic approaches will allow the analysis and understanding of genetic variation at the nucleotide sequence level, as well as the discovery of novel alleles by sequence-based approaches.

journal_name

Curr Opin Plant Biol

authors

Doi K,Yasui H,Yoshimura A

doi

10.1016/j.pbi.2008.01.008

subject

Has Abstract

pub_date

2008-04-01 00:00:00

pages

144-8

issue

2

eissn

1369-5266

issn

1879-0356

pii

S1369-5266(08)00028-9

journal_volume

11

pub_type

杂志文章,评审
  • The evolutionary basis of leaf senescence: method to the madness?

    abstract::Recent studies on the differential expression of genes associated with leaf senescence support the long-standing interpretation of plant senescence as an organized, genetically controlled process. Sequence identities of genes that are differentially expressed in senescing leaves indicate roles in the salvage of nutrie...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(98)80131-3

    authors: Bleecker AB

    更新日期:1998-02-01 00:00:00

  • Complex sexual signals for the male gametophyte.

    abstract::The pollen grain and the pollen tube that grows from it are complex entities which must respond to a diverse array of signals to carry out their roles in sexual reproduction. Research is beginning to reveal the nature both of the signals and of the signal transduction machinery that converts these signals into directi...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(99)00015-1

    authors: Pruitt RE

    更新日期:1999-10-01 00:00:00

  • Endogenous peptide ligand-receptor systems for diverse signaling networks in plants.

    abstract::Endogenous peptide ligand-receptor systems regulate cell-cell communications in various developmental processes in plants. Recent studies have revealed that the peptide-receptor combinations are not simply one-on-one with single roles. One peptide activates multiple downstream signaling through different receptors, wh...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2014.07.011

    authors: Endo S,Betsuyaku S,Fukuda H

    更新日期:2014-10-01 00:00:00

  • Chromatin dynamics in plants.

    abstract::Recent studies in yeast, animals and plants have provided major breakthroughs in unraveling the molecular mechanism of higher-order gene regulation. In conjunction with the DNA code, proteins that are involved in chromatin remodeling, histone modification and epigenetic imprinting form a large network of interactions ...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(02)00298-4

    authors: Fransz PF,de Jong JH

    更新日期:2002-12-01 00:00:00

  • Genome diversity in arbuscular mycorrhizal fungi.

    abstract::Arbuscular mycorrhizal fungi (Glomeromycota) are the most widespread and important symbionts of plants. They cannot be cultured without plants, are apparently asexual, and have multiple nuclei in a common cytoplasm. There is evidence for genetic variation among nuclei, and for segregation of this variation during grow...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2015.06.005

    authors: Young JP

    更新日期:2015-08-01 00:00:00

  • Metabolomics, genomics, proteomics, and the identification of enzymes and their substrates and products.

    abstract::A large proportion of the genes in any plant genome encode enzymes of primary and specialized (secondary) metabolism. Not all plant primary metabolites, those that are found in all or most species, have been identified. Moreover, only a small portion of the estimated hundreds of thousand specialized metabolites, those...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2005.03.004

    authors: Fridman E,Pichersky E

    更新日期:2005-06-01 00:00:00

  • Protein expression in plastids.

    abstract::The genome of the plastid has generated much interest as a target for plant transformation. The characteristics of plastid transgenes both reflect the prokaryotic origin of plastid organelles and provide a unique set of features that are currently lacking in genes introduced into the plant nucleus. Recent progress has...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(00)00153-9

    authors: Heifetz PB,Tuttle AM

    更新日期:2001-04-01 00:00:00

  • Endophyte or parasite--what decides?

    abstract::Symbiosis between a fungus and a plant is a widespread phenomenon in nature. The outcome of such an interaction can vary in a seamless manner from mutualism to parasitism. In most cases, the host plant does not suffer, in fact it often gains an advantage from colonization by a fungus. This benefit is based on a fine-t...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2006.05.001

    authors: Kogel KH,Franken P,Hückelhoven R

    更新日期:2006-08-01 00:00:00

  • Reaching the top through a tortuous path: helical growth in climbing plants.

    abstract::Climbing plants have voluble organs, for example, tendrils and modified stems, which twine up neighboring plants to reach the canopy. These organs perform exaggerated circumnutation, during which they grow towards the shaded areas of the forest (skototropism) to find a host. In response to mechanical stimulus, they gr...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2020.101982

    authors: Sousa-Baena MS,Hernandes-Lopes J,Van Sluys MA

    更新日期:2021-01-01 00:00:00

  • Transcriptional networks in leaf senescence.

    abstract::Plant senescence is a natural phenomenon known for the appearance of beautiful autumn colors and the ripening of cereals in the field. Senescence is a controlled process that plants utilize to remobilize nutrients from source leaves to developing tissues. While during the past decades, molecular components underlying ...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2015.06.018

    authors: Schippers JH

    更新日期:2015-10-01 00:00:00

  • Volatiles as inducers and suppressors of plant defense and immunity-origins, specificity, perception and signaling.

    abstract::Volatiles from attacked plants, microbes and herbivores can enhance plant defenses. However, the absence of volatiles rather than their presence has sometimes been associated with enhanced defense, suggesting that volatiles may also act as defense suppressors. Recent work provides a potential mechanistic explanation f...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2018.03.008

    authors: Erb M

    更新日期:2018-08-01 00:00:00

  • Transcriptional regulation by complex interplay between post-translational modifications.

    abstract::Transcriptional reprogramming in response to developmental changes or environmental inputs is regulated by a wide variety of transcription factors and cofactors. In plants, the stability of many transcriptional regulators is mediated by the ubiquitin-mediated proteasome. Recent reports suggest that additional post-tra...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2016.07.004

    authors: Skelly MJ,Frungillo L,Spoel SH

    更新日期:2016-10-01 00:00:00

  • Phosphate scouting by root tips.

    abstract::Chemistry assigns phosphate (Pi) dominant roles in metabolism; however, it also renders the macronutrient a genuinely limiting factor of plant productivity. Pi bioavailability is restricted by low Pi mobility in soil and antagonized by metallic toxicities, which force roots to actively seek and selectively acquire the...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2017.04.016

    authors: Abel S

    更新日期:2017-10-01 00:00:00

  • Polar transport in plants mediated by membrane transporters: focus on mechanisms of polar auxin transport.

    abstract::Directional cell-to-cell transport of functional molecules, called polar transport, enables plants to sense and respond to developmental and environmental signals. Transporters that localize to plasma membranes (PMs) in a polar manner are key components of these systems. PIN-FORMED (PIN) auxin efflux carriers, which a...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2017.06.012

    authors: Naramoto S

    更新日期:2017-12-01 00:00:00

  • Square one: zygote polarity and early embryogenesis in flowering plants.

    abstract::In the last two decades, work on auxin signaling has helped to understand many aspects of the fundamental process underlying the specification of tissue types in the plant embryo. However, the immediate steps after fertilization including the polarization of the zygote and the initial body axis formation remained poor...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2019.10.002

    authors: Wang K,Chen H,Miao Y,Bayer M

    更新日期:2020-02-01 00:00:00

  • Signaling in plant embryogenesis.

    abstract::Embryogenesis is a critical stage of the sporophytic life cycle during which the basic body plan of the plant is established. Although positional information is implicated to play a major role in determining embryo cell fate, little is known about the nature of positional signals. Recent studies show that the monopter...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(99)80005-3

    authors: Harada JJ

    更新日期:1999-02-01 00:00:00

  • ESCRT-dependent degradation of ubiquitylated plasma membrane proteins in plants.

    abstract::To control the abundance of plasma membrane receptors and transporters is crucial for proper perception and response to extracellular signals from surrounding cells and the environment. Posttranslational modification of plasma membrane proteins, especially ubiquitin conjugation or ubiquitylation, is key for the determ...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2017.07.003

    authors: Isono E,Kalinowska K

    更新日期:2017-12-01 00:00:00

  • Respiratory burst oxidases: the engines of ROS signaling.

    abstract::Reactive oxygen species (ROS) play a key signal transduction role in cells. They are involved in the regulation of growth, development, responses to environmental stimuli and cell death. The level of ROS in cells is determined by interplay between ROS producing pathways and ROS scavenging mechanisms, part of the ROS g...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2011.07.014

    authors: Suzuki N,Miller G,Morales J,Shulaev V,Torres MA,Mittler R

    更新日期:2011-12-01 00:00:00

  • Making iridoids/secoiridoids and monoterpenoid indole alkaloids: progress on pathway elucidation.

    abstract::Members of the Acanthaceae, Apocynaceae, Bignoniaceae, Caprifoliaceae, Gentianaceae, Labiatae, Lamiaceae, Loasaceae, Loganiaceae, Oleaceae, Plantaginaceae, Rubiaceae, Saxifragaceae, Scrophulariaceae, Valerianaceae, and Verbenaceae plant families are well known to accumulate thousands of bioactive iridoids/secoiridoids...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2014.03.006

    authors: De Luca V,Salim V,Thamm A,Masada SA,Yu F

    更新日期:2014-06-01 00:00:00

  • Chasing the structures of small molecules in arbuscular mycorrhizal signaling.

    abstract::The arbuscular mycorrhiza (AM) is a symbiosis between most terrestrial plants and fungi of the ancient phylum Glomeromycota. AM improves the uptake of water and mineral nutrients, such as phosphorus (P) and nitrogen (N), of the host plant in exchange for photosynthetically fixed carbon. Successful colonization and a f...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2009.06.001

    authors: Bucher M,Wegmüller S,Drissner D

    更新日期:2009-08-01 00:00:00

  • CLASP: a microtubule-based integrator of the hormone-mediated transitions from cell division to elongation.

    abstract::Plants use robust mechanisms to optimize organ size to prevailing conditions. Modulating the transition from cell division to elongation dramatically affects morphology and size. Although it is well established that auxin, cytokinin and brassinosteroid mediate these transitions, recent works show that the cytoskeleton...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章

    doi:10.1016/j.pbi.2014.11.003

    authors: Ruan Y,Wasteneys GO

    更新日期:2014-12-01 00:00:00

  • The cellular dynamics of plant aquaporin expression and functions.

    abstract::Aquaporins are channel proteins that facilitate the transport of water and small neutral molecules, including gases, across cell membranes of most of the living organisms. Integrative studies have stressed the role of aquaporins in maintaining the whole plant water and nutrient status. Cellular aspects of plant aquapo...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2009.09.002

    authors: Maurel C,Santoni V,Luu DT,Wudick MM,Verdoucq L

    更新日期:2009-12-01 00:00:00

  • Plant cell-size control: growing by ploidy?

    abstract::The size of plant cells is determined by genetic, structural and physical factors as well as by internal and external signals. Our knowledge of the molecular mechanisms of these controls is still rudimentary. Recent studies indicate that ploidy level exerts an important control on cell size. By increasing ploidy, endo...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(00)00118-7

    authors: Kondorosi E,Roudier F,Gendreau E

    更新日期:2000-12-01 00:00:00

  • Regulation of plant biomass production.

    abstract::Plant biomass used for cellulosic biofuel production is primarily from vegetative tissues. Therefore, an increase in the vegetative growth of plants will lead to a higher production of plant biomass. Recent molecular and genetic studies have identified a number of factors that regulate processes such as vegetative mer...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2010.03.002

    authors: Demura T,Ye ZH

    更新日期:2010-06-01 00:00:00

  • Chemotropic sensing in fungus-plant interactions.

    abstract::Growth of fungal hyphae is guided by a variety of chemical gradients, including nutrients, mating pheromones or host compounds. Over 100 years after chemotropism was first reported in fungus-plant interactions, our knowledge on the host signals, fungal receptors and cellular pathways is still rudimentary. Genetic anal...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2015.07.004

    authors: Turrà D,Di Pietro A

    更新日期:2015-08-01 00:00:00

  • Cell polarity in plants: a PARspective on PINs.

    abstract::Plants have acquired the ability for organized multicellular development independent from animals. Because of this, they represent an independent example in nature for the development of coordinated, complex cell polarity from the simple polarity found in unicellular eukaryotes. Plants display a striking array of pola...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2008.09.009

    authors: Geldner N

    更新日期:2009-02-01 00:00:00

  • Lonely at the top? Regulation of shoot apical meristem activity by intrinsic and extrinsic factors.

    abstract::All the above-ground organs of a plant are derived from stem cells that reside in shoot apical meristems (SAM). Over the past 25 years, the genetic pathways that control the proliferation of stem cells within the SAM, and the differentiation of their progenitors into lateral organs, have been described in great detail...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2020.08.008

    authors: Fouracre JP,Poethig RS

    更新日期:2020-12-01 00:00:00

  • Molecular control and variation in the floral transition.

    abstract::The common controls that are involved in both vegetative and floral development are becoming apparent at the molecular level. Intriguing links are also emerging between developmental events during the juvenile/adult and floral transitions. This progress has made it possible to test the annual model of floral transitio...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(01)00229-1

    authors: Battey NH,Tooke F

    更新日期:2002-02-01 00:00:00

  • The retinoblastoma pathway in plant cell cycle and development.

    abstract::The activity of cyclin-dependent kinases (CDKs) on specific targets mediates the temporal regulation of plant cell cycle transitions. The sequential activity of CDKs and the spatial regulation of cell proliferation during plant development, however, are still poorly understood. Understanding these aspects depends on t...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5266(98)80041-1

    authors: Gutierrez C

    更新日期:1998-12-01 00:00:00

  • Histone methylation in epigenetic regulation and temperature responses.

    abstract::Methylation of histones on different lysine residues is dynamically added by distinct writer enzymes, interpreted by reader proteins, and removed by eraser enzymes. This epigenetic mark has widespread, dynamic roles in plant development and environmental responses. For example, histone methylation plays a key role in ...

    journal_title:Current opinion in plant biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.pbi.2021.102001

    authors: He K,Cao X,Deng X

    更新日期:2021-01-25 00:00:00