Nucleotide sequence analysis of the long terminal repeat of integrated simian sarcoma virus: evolutionary relationship with other mammalian retroviral long terminal repeats.

Abstract:

:Nucleotide sequence analysis of the long terminal repeat (LTR) of the integrated simian sarcoma virus showed that the simian sarcoma virus LTR comprised 504 nucleotides with an inverted repeat of seven bases at its 5' and 3' termini. At the site of simian sarcoma virus integration, cellular flanking sequences adjacent to the proviral LTR contained a direct repeat of four bases. A 13-base sequence after the 5' LTR was found to be complementary to prolyl tRNA, suggesting that tRNAPro may serve as the primer for reverse transcription of simian sarcoma virus RNA. The U5 and R regions, derived respectively from the 5' end and terminally redundant sequences of the viral RNA, were found to have similar organization and sequence homology close to that of Moloney murine sarcoma virus or Moloney murine leukemia virus. These results indicate that regions within LTRs with known functionally important sequences have been most well conserved during retrovirus evolution.

journal_name

J Virol

journal_title

Journal of virology

authors

Devare SG,Reddy EP,Law JD,Aaronson SA

doi

10.1128/JVI.42.3.1108-1113.1982

subject

Has Abstract

pub_date

1982-06-01 00:00:00

pages

1108-13

issue

3

eissn

0022-538X

issn

1098-5514

journal_volume

42

pub_type

杂志文章
  • SUN2 Overexpression Deforms Nuclear Shape and Inhibits HIV.

    abstract:UNLABELLED:In a previous screen of putative interferon-stimulated genes, SUN2 was shown to inhibit HIV-1 infection in an uncharacterized manner. SUN2 is an inner nuclear membrane protein belonging to the linker of nucleoskeleton and cytoskeleton complex. We have analyzed here the role of SUN2 in HIV infection. We repor...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03202-15

    authors: Donahue DA,Amraoui S,di Nunzio F,Kieffer C,Porrot F,Opp S,Diaz-Griffero F,Casartelli N,Schwartz O

    更新日期:2016-03-28 00:00:00

  • Pivotal Role of Receptor-Interacting Protein Kinase 1 and Mixed Lineage Kinase Domain-Like in Neuronal Cell Death Induced by the Human Neuroinvasive Coronavirus OC43.

    abstract::Human coronaviruses (HCoV) are respiratory pathogens with neuroinvasive, neurotropic, and neurovirulent properties, highlighting the importance of studying the potential implication of these viruses in neurological diseases. The OC43 strain (HCoV-OC43) was reported to induce neuronal cell death, which may participate ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01513-16

    authors: Meessen-Pinard M,Le Coupanec A,Desforges M,Talbot PJ

    更新日期:2016-12-16 00:00:00

  • In vitro packaging and replication of individual genomic segments of bacteriophage phi 6 RNA.

    abstract::The genome of bacteriophage phi 6 contains three segments of double-stranded RNA. Procapsid structures whose formation was directed by cDNA copies of the large genomic segment are capable of packaging the three viral message sense RNAs in the presence of ATP. Addition of UTP, CTP, and GTP results in the synthesis of m...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.5.2611-2616.1992

    authors: Gottlieb P,Strassman J,Qiao X,Frilander M,Frucht A,Mindich L

    更新日期:1992-05-01 00:00:00

  • Antigenic and receptor binding properties of enterovirus 68.

    abstract:UNLABELLED:Increased detection of enterovirus 68 (EV68) among patients with acute respiratory infections has been reported from different parts of the world in the late 2000s since its first detection in pediatric patients with lower-respiratory-tract infections in 1962. However, the underlying molecular mechanisms for...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03070-13

    authors: Imamura T,Okamoto M,Nakakita S,Suzuki A,Saito M,Tamaki R,Lupisan S,Roy CN,Hiramatsu H,Sugawara KE,Mizuta K,Matsuzaki Y,Suzuki Y,Oshitani H

    更新日期:2014-03-01 00:00:00

  • Impairment of Gag-specific CD8(+) T-cell function in mucosal and systemic compartments of simian immunodeficiency virus mac251- and simian-human immunodeficiency virus KU2-infected macaques.

    abstract::The identification of several simian immunodeficiency virus mac251 (SIV(mac251)) cytotoxic T-lymphocyte epitopes recognized by CD8(+) T cells of infected rhesus macaques carrying the Mamu-A*01 molecule and the use of peptide-major histocompatibility complex tetrameric complexes enable the study of the frequency, bread...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.23.11483-11495.2001

    authors: Hel Z,Nacsa J,Kelsall B,Tsai WP,Letvin N,Parks RW,Tryniszewska E,Picker L,Lewis MG,Edghill-Smith Y,Moniuszko M,Pal R,Stevceva L,Altman JD,Allen TM,Watkins D,Torres JV,Berzofsky JA,Belyakov IM,Strober W,Franchini G

    更新日期:2001-12-01 00:00:00

  • The vaccinia virus A33R protein provides a chaperone function for viral membrane localization and tyrosine phosphorylation of the A36R protein.

    abstract::The products of the A33R and A36R genes of vaccinia virus are incorporated into the membranes of intracellular enveloped virions (IEV). When extracts of cells that had been infected with vaccinia virus and labeled with H(3)(32)PO(4) were immunoprecipitated with antibodies against the A33R protein, two prominent bands ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.1.303-310.2001

    authors: Wolffe EJ,Weisberg AS,Moss B

    更新日期:2001-01-01 00:00:00

  • A monoclonal antibody to human immunodeficiency virus type 1 which mediates cellular cytotoxicity and neutralization.

    abstract::Monoclonal antibodies (MAbs) were raised against human immunodeficiency virus type 1 gp120. One MAb, P4/D10, was found to mediate highly efficient antibody-dependent cellular cytotoxicity and virus neutralization. The reactivity was located to a major neutralizing region (amino acids 304 to 323) on gp120. Five other M...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.2.936-940.1990

    authors: Broliden PA,Ljunggren K,Hinkula J,Norrby E,Akerblom L,Wahren B

    更新日期:1990-02-01 00:00:00

  • Bimolecular complementation of paramyxovirus fusion and hemagglutinin-neuraminidase proteins enhances fusion: implications for the mechanism of fusion triggering.

    abstract::For paramyxoviruses, entry requires a receptor-binding protein (hemagglutinin-neuraminidase [HN], H, or G) and a fusion protein (F). Like other class I viral fusion proteins, F is expressed as a prefusion metastable protein that undergoes a refolding event to induce fusion. HN binding to its receptor triggers F refold...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01191-09

    authors: Connolly SA,Leser GP,Jardetzky TS,Lamb RA

    更新日期:2009-11-01 00:00:00

  • Insertion of capsid proteins from nonenveloped viruses into the retroviral budding pathway.

    abstract::Retroviral Gag proteins direct the assembly and release of virus particles from the plasma membrane. The budding machinery consists of three small domains, the M (membrane-binding), I (interaction), and L (late or "pinching-off") domains. In addition, Gag proteins contain sequences that control particle size. For Rous...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.14.6527-6536.2001

    authors: Krishna NK,Wills JW

    更新日期:2001-07-01 00:00:00

  • Isolation and characterization of measles virus intracellular nucleocapsid RNA.

    abstract::Protocols have been established for the preparation of large amounts of pure measles virus intracellular nucleocapsids. As a result, it has been possible to routinely achieve nucleocapsid RNA yields of approximately 200 micrograms (from approximately 5 X 10(8) infected cells). Electrophoretic analysis of this RNA unde...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.49.1.57-65.1984

    authors: Udem SA,Cook KA

    更新日期:1984-01-01 00:00:00

  • Computationally Optimized Broadly Reactive Hemagglutinin Elicits Hemagglutination Inhibition Antibodies against a Panel of H3N2 Influenza Virus Cocirculating Variants.

    abstract::Each influenza season, a set of wild-type viruses, representing one H1N1, one H3N2, and one to two influenza B isolates, are selected for inclusion in the annual seasonal influenza vaccine. In order to develop broadly reactive subtype-specific influenza vaccines, a methodology called computationally optimized broadly ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01581-17

    authors: Wong TM,Allen JD,Bebin-Blackwell AG,Carter DM,Alefantis T,DiNapoli J,Kleanthous H,Ross TM

    更新日期:2017-11-30 00:00:00

  • Critical role of MDA5 in the interferon response induced by human metapneumovirus infection in dendritic cells and in vivo.

    abstract::Human metapneumovirus (hMPV) is a respiratory paramyxovirus of global clinical relevance. Despite the substantial knowledge generated during the last 10 years about hMPV infection, information regarding the activation of the immune response against this virus remains largely unknown. In this study, we demonstrated tha...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01213-12

    authors: Baños-Lara Mdel R,Ghosh A,Guerrero-Plata A

    更新日期:2013-01-01 00:00:00

  • Induction of macrophage procoagulant activity by murine hepatitis virus strain 3: role of tyrosine phosphorylation.

    abstract::The induction of a unique macrophage procoagulant molecule by murine hepatitis virus strain 3 correlates with the severity of viral hepatitis. The role of tyrosine phosphorylation in the signalling pathway leading to procoagulant expression was studied. Murine hepatitis virus strain 3 initiated a rapid increase in pho...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.9.5824-5828.1995

    authors: Dackiw AP,Zakrzewski K,Nathens AB,Cheung PY,Fingerote R,Levy GA,Rotstein OD

    更新日期:1995-09-01 00:00:00

  • Isolation and properties of Moloney murine leukemia virus mutants: use of a rapid assay for release of virion reverse transcriptase.

    abstract::A rapid assay for retroviral reverse transcriptase activity released into the culture medium by infected cells was developed. With the assay, 4,000 clonally infected cell lines could be tested in a few hours. We have adapted the assay for use as a screen for the detection of spontaneous viral mutants. Mutants of Molon...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.38.1.239-248.1981

    authors: Goff S,Traktman P,Baltimore D

    更新日期:1981-04-01 00:00:00

  • Expression of hepatitis C virus proteins induces distinct membrane alterations including a candidate viral replication complex.

    abstract::Plus-strand RNA viruses characteristically replicate their genome in association with altered cellular membranes. In the present study, the capacity of hepatitis C virus (HCV) proteins to elicit intracellular membrane alterations was investigated by expressing, in tetracycline-regulated cell lines, a comprehensive pan...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.12.5974-5984.2002

    authors: Egger D,Wölk B,Gosert R,Bianchi L,Blum HE,Moradpour D,Bienz K

    更新日期:2002-06-01 00:00:00

  • Herpes simplex virus capsids assembled in insect cells infected with recombinant baculoviruses: structural authenticity and localization of VP26.

    abstract::Recently, recombinant baculoviruses have been used to show that expression of six herpes simplex virus type 1 genes results in the formation of capsid-like particles. We have applied cryoelectron microscopy and three-dimensional image reconstruction to establish their structural authenticity to a resolution of approxi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.11.7362-7366.1995

    authors: Trus BL,Homa FL,Booy FP,Newcomb WW,Thomsen DR,Cheng N,Brown JC,Steven AC

    更新日期:1995-11-01 00:00:00

  • Production and reactivity of immune sera specific for HADEN virus polypeptide antigens.

    abstract::Antisera were prepared against the three structural polypeptides of HADEN virus dissociated with sodium dodecyl sulfate. These immunological reagents were used in immunofluorescence tests to study the kinetics and location of polypeptide antigen appearance in infected cells. These sera did not neutralize virus infecti...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.13.3.608-613.1974

    authors: Croft GF,Hoggan MD,Johnson FB

    更新日期:1974-03-01 00:00:00

  • Functional characterization of thermolabile DNA-binding proteins that affect adenovirus DNA replication.

    abstract::The human adenovirus type 2 (Ad2) mutant Ad2ts111 has previously been shown to contain two mutations which result in a complex phenotype. Ad2ts111 contains a single base change in the early region 1B (E1B) 19,000-molecular-weight (19K) coding region which yields a cyt deg phenotype and another defect which maps to the...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.57.3.883-892.1986

    authors: Prelich G,Stillman BW

    更新日期:1986-03-01 00:00:00

  • Construction of recombinant murine retroviruses that express the human T-cell leukemia virus type II and human T-cell lymphotropic virus type III trans activator genes.

    abstract::Recombinant retroviruses containing the trans activator genes of human T-cell leukemia virus (HTLV) type II and human T-cell lymphotropic virus type III were constructed. The trans activator genes tat II and tat III were inserted into the murine retroviral vector pZIPNEOSV(X)1. Recombinant plasmids were transfected in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.57.1.379-384.1986

    authors: Rosen CA,Sodroski JG,Campbell K,Haseltine WA

    更新日期:1986-01-01 00:00:00

  • Nuclear subcompartmentalization of simian virus 40 large T antigen: evidence for in vivo regulation of biochemical activities.

    abstract::Simian virus 40 large T antigen (large T) in the early and the late phases of infection differs significantly in its sequence-specific DNA-binding and ATPase activities, indicating that different large-T populations participate in virus-specific events at various stages of the infectious cycle. To further characterize...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.5.2308-2316.1989

    authors: Schirmbeck R,Deppert W

    更新日期:1989-05-01 00:00:00

  • Cloning and characterization of herpes simplex virus type 1 oriL: comparison of replication and protein-DNA complex formation by oriL and oriS.

    abstract::The herpes simplex virus type 1 genome contains three origins of DNA replication: two copies of oriS and one copy of oriL. Although oriS has been characterized extensively, characterization of oriL has been severely limited by the inability to amplify oriL sequences in an undeleted form in Escherichia coli. We report ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.3.1377-1388.1995

    authors: Hardwicke MA,Schaffer PA

    更新日期:1995-03-01 00:00:00

  • A Novel Approach To Display Structural Proteins of Hepatitis C Virus Quasispecies in Patients Reveals a Key Role of E2 HVR1 in Viral Evolution.

    abstract::Hepatitis C virus (HCV) infection remains a major worldwide health problem despite development of highly effective direct-acting antivirals. HCV rapidly evolves upon acute infection and generates multiple viral variants (quasispecies), leading to immune evasion and persistent viral infection. Identification of epitope...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00622-20

    authors: Tong Y,Li Q,Li R,Xu Y,Pan Y,Niu J,Zhong J

    更新日期:2020-08-17 00:00:00

  • MyD88 intrinsically regulates CD4 T-cell responses.

    abstract::Myeloid differentiation factor 88 (MyD88) is an essential adaptor protein in the Toll-like receptor-mediated innate signaling pathway, as well as in interleukin-1 receptor (IL-1R) and IL-18R signaling. The importance of MyD88 in the regulation of innate immunity to microbial pathogens has been well demonstrated. Howev...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01770-08

    authors: Zhou S,Kurt-Jones EA,Cerny AM,Chan M,Bronson RT,Finberg RW

    更新日期:2009-02-01 00:00:00

  • Covalent Linkage of HIV-1 Trimers to Synthetic Liposomes Elicits Improved B Cell and Antibody Responses.

    abstract::We have demonstrated that a liposomal array of well-ordered trimers enhances B cell activation, germinal center formation, and the elicitation of tier-2 autologous neutralizing antibodies. Previously, we coupled well-ordered cleavage-independent NFL trimers via their C-terminal polyhistidine tails to nickel lipids int...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00443-17

    authors: Bale S,Goebrecht G,Stano A,Wilson R,Ota T,Tran K,Ingale J,Zwick MB,Wyatt RT

    更新日期:2017-07-27 00:00:00

  • The complement control protein homolog of herpesvirus saimiri regulates serum complement by inhibiting C3 convertase activity.

    abstract::The herpesvirus saimiri genome encodes a complement control protein homolog (CCPH). Stable mammalian cell transfectants expressing a recombinant transmembrane form of CCPH (mCCPH) or a 5'FLAG epitope-tagged mCCPH (5'FLAGmCCPH) conferred resistance to complement-mediated cell damage by inhibiting the lytic activity of ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.6.3889-3892.1995

    authors: Fodor WL,Rollins SA,Bianco-Caron S,Rother RP,Guilmette ER,Burton WV,Albrecht JC,Fleckenstein B,Squinto SP

    更新日期:1995-06-01 00:00:00

  • Epstein-Barr virus nuclear antigen 2 activates transcription of the terminal protein gene.

    abstract::Transcription of the terminal protein (TP) gene of Epstein-Barr virus (EBV) in Burkitt's lymphoma cells, in EBV-negative Burkitt's lymphoma cells converted with transformation-defective (P3HR1) and transformation-competent (B95-8, AG876) EBV strains, and in EBV-immortalized cell lines was studied. A TP1 cDNA probe spa...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.1.415-423.1991

    authors: Zimber-Strobl U,Suentzenich KO,Laux G,Eick D,Cordier M,Calender A,Billaud M,Lenoir GM,Bornkamm GW

    更新日期:1991-01-01 00:00:00

  • Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals.

    abstract::We molecularly cloned JC polyomavirus DNAs from urine samples of eight nonimmunosuppressed patients and two healthy individuals. The cloned viral DNAs all contained an archetypal regulatory sequence from which various regulatory sequences of JC polyomavirus isolates derived from patients with progressive multifocal le...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.6.3139-3143.1990

    authors: Yogo Y,Kitamura T,Sugimoto C,Ueki T,Aso Y,Hara K,Taguchi F

    更新日期:1990-06-01 00:00:00

  • Equilibrium centrifugation studies of hepatitis C virus: evidence for circulating immune complexes.

    abstract::The buoyant density of hepatitis C virus (HCV), with high in vivo infectivity (strain H) or low in vivo infectivity (strain F), was determined by sucrose gradient equilibrium centrifugation. Viral RNA of strain H was detected in fractions with densities of < or = 1.09 g/ml (principally approximately 1.06 g/ml), while ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.4.1953-1958.1993

    authors: Hijikata M,Shimizu YK,Kato H,Iwamoto A,Shih JW,Alter HJ,Purcell RH,Yoshikura H

    更新日期:1993-04-01 00:00:00

  • Active-site mutations in the South african human immunodeficiency virus type 1 subtype C protease have a significant impact on clinical inhibitor binding: kinetic and thermodynamic study.

    abstract::Human immunodeficiency virus (HIV) infections in sub-Saharan Africa represent about 56% of global infections. Study of active-site mutations (the V82A single mutation and the V82F I84V double mutation) in the less-studied South African HIV type 1 subtype C (C-SA) protease indicated that neither mutation had a signific...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00726-08

    authors: Mosebi S,Morris L,Dirr HW,Sayed Y

    更新日期:2008-11-01 00:00:00

  • Isolation of poliovirus 2C mutants defective in viral RNA synthesis.

    abstract::Two poliovirus mutants were isolated that contain an oligonucleotide linker insertion in the 2C-coding region of the viral genome. One, 2C-31, has a strongly temperature-sensitive phenotype and the other, 2C-32, forms small plaques on HeLa cell monolayers at all temperatures. Both mutants have a severe temperature-sen...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.11.4016-4021.1988

    authors: Li JP,Baltimore D

    更新日期:1988-11-01 00:00:00