Identification of manipulated variables for a glycosylation control strategy.

Abstract:

:N-linked glycan distribution affects important end-use characteristics such as the bioactivity and efficacy of many therapeutic proteins, (including monoclonal antibodies), in vivo. Yet, obtaining desired glycan distributions consistently during batch-to-batch production can be challenging for biopharmaceutical manufacturers. While an appropriately implemented on-line glycosylation control strategy during production can help to ensure a consistent glycan distribution, to date no such strategies have been reported. Our goal is to develop and validate a comprehensive strategy for effective on-line control of glycosylation, the successful achievement of which requires first identifying appropriate manipulated variables that can be used to direct the glycan distribution to a desired state. While various culture conditions such as bioreactor process variables, media type, and media supplements have been shown to affect the glycan distribution, in this study we focus on the latter. Specifically, we implemented a statistically designed series of experiments to determine the significant main effects (as well as interaction effects) of media supplementation with manganese, galactose, ammonia and found that each had significant effects on certain glycans. We also include data indicating the glycosylation enzyme gene transcript levels as well as the intracellular nucleotide sugar concentrations in the presence of the media supplements to provide insight into the intracellular conditions that may be contributing to the changes in glycan distribution. The acquired experimental data sets were then used to identify which glycans can be controlled by the media supplements and to what degree. We determined that MnCl2 can be used as a manipulated variable to increase the relative abundance of M51 and decrease FA2 simultaneously, and galactose can be used as a manipulated variable to increase the relative abundance of FA2G1 and decrease FA2 and A2 simultaneously.

journal_name

Biotechnol Bioeng

authors

St Amand MM,Radhakrishnan D,Robinson AS,Ogunnaike BA

doi

10.1002/bit.25251

subject

Has Abstract

pub_date

2014-10-01 00:00:00

pages

1957-70

issue

10

eissn

0006-3592

issn

1097-0290

journal_volume

111

pub_type

杂志文章
  • Sulfide oxidation at halo-alkaline conditions in a fed-batch bioreactor.

    abstract::A biotechnological process is described to remove hydrogen sulfide (H(2)S) from high-pressure natural gas and sour gases produced in the petrochemical industry. The process operates at halo-alkaline conditions and combines an aerobic sulfide-oxidizing reactor with an anaerobic sulfate (SO(4) (2-)) and thiosulfate (S(2...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21326

    authors: van den Bosch PL,van Beusekom OC,Buisman CJ,Janssen AJ

    更新日期:2007-08-01 00:00:00

  • Antibody-based surface plasmon resonance detection of intact viral pathogen.

    abstract::Surface plasmon resonance (SPR) technique was used to directly detect an intact form of insect pathogen: the baculovirus, Autographa californica multiple nuclear polyhedrosis virus (AcMNPV). An SPR sensor chip with three bio-functional layers was used to detect the intact AcMNPV: amine-reactive crosslinker with a disu...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20882

    authors: Baac H,Hajós JP,Lee J,Kim D,Kim SJ,Shuler ML

    更新日期:2006-07-05 00:00:00

  • A microfluidic system for investigation of extravascular transport and cellular uptake of drugs in tumors.

    abstract::Three-dimensional (3D) tumor models have been established in various microfluidic systems for drug delivery and resistance studies in vitro. However, one of the main drawbacks of these models is non-uniform distribution of cells, leaving regions with very low cell density within the 3D structures. As a result, molecul...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.24397

    authors: Elliott NT,Yuan F

    更新日期:2012-05-01 00:00:00

  • The acetone butanol fermentation on glucose and xylose. I. Regulation and kinetics in batch cultures.

    abstract::The kinetics in batch culture of the acetone butanol fermentation by Clostridium acetobutylicum is compared on glucose, xylose, and mixtures of both sugars. The fastest initial growth and transition from an acid to a solvent metabolism occurs on glucose, with a final 62 g/L glucose conversion. On xylose, an initial sl...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260280203

    authors: Fond O,Engasser JM,Matta-El-Amouri G,Petitdemange H

    更新日期:1986-02-01 00:00:00

  • A flow injection flow cytometry system for on-line monitoring of bioreactors.

    abstract::For direct and on-line study of the physiological states of cell cultures, a robust flow injection system has been designed and interfaced with flow cytometry (FI-FCM). The core of the flow injection system includes a microchamber designed for sample processing. The design of this microchamber allows not only an accur...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0290(19990305)62:5<609::aid-bit

    authors: Zhao R,Natarajan A,Srienc F

    更新日期:1999-03-05 00:00:00

  • Immobilized enzyme cellulose hollow fibers: II. Kinetic analysis.

    abstract::Immobilized enzyme hollow fibers may be useful in the purification or treatment of whole blood under clinical conditions. In this study, catalytically pure heparinase was immobilized to cellulose to analyze the feasibility for the removal of heparin's anticoagulant activity from whole blood. The kinetics of catalytica...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260341105

    authors: Comfort AR,Albert E,Langer R

    更新日期:1989-12-20 00:00:00

  • Adapting viral safety assurance strategies to continuous processing of biological products.

    abstract::There has been a recent drive in commercial large-scale production of biotechnology products to convert current batch mode processing to continuous processing manufacturing. There have been reports of model systems capable of adapting and linking upstream and downstream technologies into a continuous manufacturing pip...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章,评审

    doi:10.1002/bit.26060

    authors: Johnson SA,Brown MR,Lute SC,Brorson KA

    更新日期:2017-01-01 00:00:00

  • An immobilized hydrogenase from Alcaligenes eutrophus H-16.

    abstract::Alcaligenes Eutrophus H-16 was grown in continuous culture under conditions which induced hydrogenase production. The hydrogenase enzyme was extracted, partially purified and immobilized on porous glass. This enzyme was then studied both in solution and in immobilized form as a possible candidate for a number of indus...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260320306

    authors: Deloggio TJ,Graves DJ

    更新日期:1988-07-20 00:00:00

  • The response of a bioelectrochemical cell with Saccharomyces cerevisiae metabolizing glucose under various fermentation conditions.

    abstract::Working conditions of a biochemical fuel cell formed by an oxygen cathode and a platinum bioanode in a Saccharomyces cerevisiae suspension metabolizing glucose are described. The biocell response in terms of bioanode potential and current drainage under different fermentation conditions is reported. A kinetic equation...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260171011

    authors: Videla HA,Arvía AJ

    更新日期:1975-10-01 00:00:00

  • Restraining Erwinia virulence by expression of N-acyl homoserine lactonase gene pro3A-aiiA in Bacillus thuringiensis subsp leesis.

    abstract::To widen the biological control function of a genetically modified Bacillus thuringiensis subsp leesis strain BMB-005, an acyl homoserine lactonase (AHL lactonase) gene aiiA transcribed by the promoter of insecticidal crystal protein coding gene cry3A, was transformed into strain BMB-005. The amount of AHL lactonase p...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21032

    authors: Zhu C,Yu Z,Sun M

    更新日期:2006-10-20 00:00:00

  • A kinetic model of quantitative real-time polymerase chain reaction.

    abstract::Real-time polymerase chain reaction (PCR) is one of the most sensitive and accurate methods for quantifying transcript levels especially for those expressed at low abundance. The selective amplification of target DNA over multiple cycles allows its initial concentration to be determined. The amplification rate is a co...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20555

    authors: Mehra S,Hu WS

    更新日期:2005-09-30 00:00:00

  • Behavior of spores of Penicillium roquefortii during fed-batch bioconversion of octanoic acid into 2-heptanone.

    abstract::The bioconversion of octanoic acid into 2-heptanone by spores of Penicillium roquefortii is performed using a fed-batch technique with pH control by addition of the liquid substrate itself. The early stage of this process takes place with a high bioconversion rate and high yield. These values then decrease as a result...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260440606

    authors: Larroche C,Besson I,Gros JB

    更新日期:1994-09-05 00:00:00

  • A dynamic model linking cell growth to intracellular metabolism and extracellular by-product accumulation.

    abstract::Mathematical modeling of animal cell growth and metabolism is essential for the understanding and improvement of the production of biopharmaceuticals. Models can explain the dynamic behavior of cell growth and product formation, support the identification of the most relevant parameters for process design, and signifi...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.27288

    authors: Ramos JRC,Rath AG,Genzel Y,Sandig V,Reichl U

    更新日期:2020-05-01 00:00:00

  • Biological sulfate reduction using synthesis gas as energy and carbon source.

    abstract::Biological sulfate reduction was studied in laboratory-scale gas-lift reactors. Synthesis gas (gas mixtures of H(2)/CO/CO(2)) was used as energy and carbon source. The required biomass retention was obtained by aggregation and immobilization on pumice particles. Special attention was paid to the effect of CO addition ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19960420)50:2<136::AID-BIT

    authors: van Houten RT,van der Spoel H,van Aelst AC,Hulshoff Pol LW,Lettinga G

    更新日期:1996-04-20 00:00:00

  • A flow-cytometric analysis of hybridoma growth and monoclonal antibody production.

    abstract::A flow cytometric kinetic study of hybridoma growth and monoclonal antibody production is presented, along with the influence of glutamine on intracellular responses such as (relative) cell size, and cell RNA and total protein content. Specific findings are: (1) RNA content remained constant throughout the growth phas...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260360109

    authors: Dalili M,Ollis DF

    更新日期:1990-06-05 00:00:00

  • Stoichiometric analysis of animal cell growth and its application in medium design.

    abstract::Animal cell cultivation in vitro has been studied for more than 40 years. However, the culture medium composition has not been designed on the basis of the stoichiometric nutritional demands for animal cell growth. In this article, a model was developed to study the stoichiometric demands for nutrients (including gluc...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260431122

    authors: Xie L,Wang DI

    更新日期:1994-05-01 00:00:00

  • Arabidopsis glycosyltransferases as biocatalysts in fermentation for regioselective synthesis of diverse quercetin glucosides.

    abstract::Regioselectivity of glycosyltransferases offers an important means to overcome the limitations of chemical synthesis of small molecule glycosides. In this study we explore a large multigene family of UDP-glucose:glycosyltransferases of Arabidopsis for their potential as novel biocatalysts for in vitro synthesis and wh...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20154

    authors: Lim EK,Ashford DA,Hou B,Jackson RG,Bowles DJ

    更新日期:2004-09-05 00:00:00

  • C-terminal lysine variants in fully human monoclonal antibodies: investigation of test methods and possible causes.

    abstract::The C-terminal lysine variation is commonly observed in biopharmaceutical monoclonal antibodies. This modification can be important since it is found to be sensitive to the production process. The methods commonly used to probe this charge variation, including IEF, cIEF, ion-exchange chromatography, and LC-MS, were ev...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21855

    authors: Dick LW Jr,Qiu D,Mahon D,Adamo M,Cheng KC

    更新日期:2008-08-15 00:00:00

  • Comparative studies on enzyme preparations and role of cell components for (R)-phenylacetylcarbinol production in a two-phase biotransformation.

    abstract::Whole cell pyruvate decarboxylase (PDC) from Candida utilis enhanced the enzymatic production of (R)-phenylacetylcarbinol (PAC) in an aqueous/octanol biotransformation compared to the partially purified PDC especially for a lower range of initial activities (0.3-2.5 U/mL). With an initial activity of 1.1 U/mL and at a...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20959

    authors: Satianegara G,Rogers PL,Rosche B

    更新日期:2006-08-20 00:00:00

  • Harvesting of Scenedesmus obliquus in wastewaters: auto- or bioflocculation?

    abstract::Autoflocculation and bioflocculation are considered to be the most promising means for the economical harvesting of microalgae. We have therefore studied these phenomena with cultures of Scenedesmus obliquus produced during biological tertiary wastewater treatment. The quantity of extracellular polymers produced durin...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260300707

    authors: Lavoie A,de la Noüe J

    更新日期:1987-11-01 00:00:00

  • Egr1 and Gas6 facilitate the adaptation of HEK-293 cells to serum-free media by conferring enhanced viability and higher growth rates.

    abstract::Animal-derived serum is an essential media supplement for mammalian cells in cell culture. For a number of reasons including cost, regulatory concerns, lot inconsistency, potential contamination with adventitious agents, and down-stream processing it is desirable to eliminate the use of serum. Existing protocols desig...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21707

    authors: Jaluria P,Konstantopoulos K,Betenbaugh M,Shiloach J

    更新日期:2008-04-15 00:00:00

  • Differential stability of proteolytically active and inactive recombinant metalloproteinase in Chinese hamster ovary cells.

    abstract::Stability of heterologous protein expression during production is critical for regulatory approval of vaccine and therapeutic products. Leishmania GP63, a zinc metalloproteinase that is a potential vaccine candidate, has been expressed on the surface of Chinese hamster ovary (CHO) cells. Flow cytometry was used to fol...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19970320)53:6<594::AID-BIT

    authors: Morrison CJ,McMaster WR,Piret JM

    更新日期:1997-03-20 00:00:00

  • Stimulating in-soil rhamnolipid production in a bioslurry reactor by limiting nitrogen.

    abstract::A soil with aged contamination from lubricating oil (LO) and polychlorinated biphenyls (PCBs) was treated in a bioslurry reactor to investigate in-soil biosurfactant production by Pseudomonas aeruginosa, the most abundant indigenous, culturable, hydrocarbon-degrading microorganism. After 2 days of growth on LO, a depl...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20295

    authors: Hudak AJ,Cassidy DP

    更新日期:2004-12-30 00:00:00

  • Analysis of continuous cultures of recombinant methylotrophs.

    abstract::Static and dynamic characteristics of continuous cultures of recombinant methylotrophs, which are designed to improve the selectivity of plasmid-bearing cells and the plasmid stability, are investigated in detail. Operational regions in which coexistence (survival of plasmid-bearing and plasmid-free cells) operation i...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260290802

    authors: Parulekar SJ,Chang YK,Modak JM,Lim HC

    更新日期:1987-06-01 00:00:00

  • Cellulases adsorb reversibly on biomass lignin.

    abstract::Adsorption of cellulases onto lignin is considered a major factor in retarding enzymatic cellulose degradation of lignocellulosic biomass. However, the adsorption mechanisms and kinetics are not well understood for individual types of cellulases. This study examines the binding affinity, kinetics of adsorption, and co...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.26820

    authors: Djajadi DT,Pihlajaniemi V,Rahikainen J,Kruus K,Meyer AS

    更新日期:2018-12-01 00:00:00

  • Saccharification, fermentation, and protein recovery from low-temperature AFEX-treated coastal bermudagrass.

    abstract::Coastal bermudagrass was pretreated by a low-temperature ammonia fiber explosion (AFEX) process, which soaked the grass in liquid ammonia and then explosively released the pressure. Saccharifying enzymes were systematically applied to the AFEX-treated grass corresponding to low, medium, and high loadings of cellulase/...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260440914

    authors: Holtzapple MT,Ripley EP,Nikolaou M

    更新日期:1994-11-05 00:00:00

  • Recycle hollow fiber enzyme reactor with flow swing.

    abstract::The hollow fiber enzyme reactor with pulsation developed by Kim and Chang (1983) was operated in a differential mode by recycling a substrate solution, in order to assess the efficiency of ultrafiltration swing. The rates of lactose conversion by beta-galactosidase contained in the shell side of the reactor were measu...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260270813

    authors: Park TH,Kim IH,Chang HN

    更新日期:1985-08-01 00:00:00

  • On-line estimation of dissolved methane concentration during methanotrophic fermentations.

    abstract::Knowledge of the aqueous phase methane concentration is critical to understanding and controlling process kinetics in methanotrophic bioreactors. Unfortunately since no dissolved methane probe is commercially available, this data must be obtained off-line by the time-consuming gas-liquid partition method. In this stud...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21050

    authors: Yu Y,Ramsay JA,Ramsay BA

    更新日期:2006-12-05 00:00:00

  • The design of controllers for batch bioreactors.

    abstract::The implementation of control algorithms to batch bioreactors is often complicated by variations in process dynamics that occur during the course of fermentation. Such a wide operating range often renders the performance of fixed gain proportional-integral-differential (PID) controllers unsatisfactory. In this work, d...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260320415

    authors: Cardello RJ,San KY

    更新日期:1988-08-05 00:00:00

  • Biological destruction of CCl(4): I. Experimental design and data.

    abstract::A denitrifying consortium capable of transforming carbon tetrachloride (CCl(4)) was cultured from aquifer sediment from the U.S. Department of Energy's Hanford Site in southeastern Washington State. To understand the kinetics of the biological destruction of CCl(4) by these microbes, a set of experiments, the conditio...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260430613

    authors: Petersen JN,Skeen RS,Amos KM,Hooker BS

    更新日期:1994-03-15 00:00:00