Abstract:
:The rice genome annotation has been greatly improved in recent years, largely due to the availability of full length cDNA sequences derived from many tissues. Among those yet to be studied is the aleurone layer, which produces hydrolases for mobilization of seed storage reserves during seed germination and post germination growth. Herein, we report transcriptomes of aleurone cells treated with the hormones abscisic acid, gibberellic acid, or both. Using a comprehensive approach, we identified hundreds of novel genes. To minimize the number of false positives, only transcripts that did not overlap with existing annotations, had a high level of expression, and showed a high level of uniqueness within the rice genome were considered to be novel genes. This approach led to the identification of 553 novel genes that encode proteins and/or microRNAs. The transcriptome data reported here will help to further improve the annotation of the rice genome.
journal_name
Genomicsjournal_title
Genomicsauthors
Watanabe KA,Ringler P,Gu L,Shen QJdoi
10.1016/j.ygeno.2013.10.007subject
Has Abstractpub_date
2014-01-01 00:00:00pages
122-34issue
1eissn
0888-7543issn
1089-8646pii
S0888-7543(13)00202-4journal_volume
103pub_type
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