Identification of an ubinuclein 1 region required for stability and function of the human HIRA/UBN1/CABIN1/ASF1a histone H3.3 chaperone complex.

Abstract:

:The mammalian HIRA/UBN1/CABIN1/ASF1a (HUCA) histone chaperone complex deposits the histone H3 variant H3.3 into chromatin and is linked to gene activation, repression, and chromatin assembly in diverse cell contexts. We recently reported that a short N-terminal fragment of UBN1 containing amino acids 1-175 is necessary and sufficient for interaction with the WD repeats of HIRA and attributed this interaction to a region from residues 120-175 that is highly conserved with the yeast ortholog Hpc2 and so termed the HRD for Hpc2-related domain. In this report, through a more comprehensive and refined biochemical and mutational analysis, we identify a smaller and more moderately conserved region within residues 41-77 of UBN1, which we term the NHRD, that is essential for interaction with the HIRA WD repeats; we further demonstrate that the HRD is dispensable for this interaction. We employ analytical ultracentrifugation studies to demonstrate that the NHRD of UBN1 and the WD repeats of HIRA form a tight 1:1 complex with a dissociation constant in the nanomolar range. Mutagenesis experiments identify several key residues in the NHRD that are required for interaction with the HIRA WD repeat domain, stability of the HUCA complex in vitro and in vivo, and changes in chromatin organization in primary human cells. Together, these studies implicate the NHRD domain of UBN1 as being an essential region for HIRA interaction and chromatin organization by the HUCA complex.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Tang Y,Puri A,Ricketts MD,Rai TS,Hoffmann J,Hoi E,Adams PD,Schultz DC,Marmorstein R

doi

10.1021/bi300050b

subject

Has Abstract

pub_date

2012-03-27 00:00:00

pages

2366-77

issue

12

eissn

0006-2960

issn

1520-4995

journal_volume

51

pub_type

杂志文章
  • Roles of aquaporin-4 isoforms and amino acids in square array assembly.

    abstract::Aquaporin-4 (AQP4) is a water channel found at high concentrations around blood vessels in the brain and is organized into elaborate assemblies called square arrays. The natural functions of AQP4 and the square arrays remain unknown, but under pathophysiological conditions, AQP4 has been shown to influence brain edema...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802231q

    authors: Strand L,Moe SE,Solbu TT,Vaadal M,Holen T

    更新日期:2009-06-30 00:00:00

  • tRNA 3' processing in plants: nuclear and mitochondrial activities differ.

    abstract::The nuclear tRNA 3' processing activity from wheat has been characterized and partially purified. Several characteristics of the wheat nuclear 3' processing enzyme now allow this activity to be distinguished from its mitochondrial counterpart. The nuclear enzyme is an endonuclease, which we termed nuclear RNase Z. The...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992253e

    authors: Mayer M,Schiffer S,Marchfelder A

    更新日期:2000-02-29 00:00:00

  • Three small ribooligonucleotides with specific arginine sites.

    abstract::Arginine-binding RNA motifs are important to protein-RNA interaction and perhaps also for Archean biochemistry. Selection-amplification was used to isolate three RNAs that are eluted by free arginine from an L-arginine affinity column (Kd approximately 0.2-0.4 mM). The binding sites contain specific internal and bulge...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00072a002

    authors: Connell GJ,Illangesekare M,Yarus M

    更新日期:1993-06-01 00:00:00

  • Trafficking of preassembled opioid mu-delta heterooligomer-Gz signaling complexes to the plasma membrane: coregulation by agonists.

    abstract::The cellular site of formation, Galpha-coupling preference, and agonist regulation of mu-delta opioid receptor (OR) heterooligomers were studied. Bioluminescence resonance energy transfer (BRET) showed that mu-deltaOR heterooligomers, composed of preformed mu and delta homooligomers, interacted constitutively in the e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701436w

    authors: Hasbi A,Nguyen T,Fan T,Cheng R,Rashid A,Alijaniaram M,Rasenick MM,O'Dowd BF,George SR

    更新日期:2007-11-13 00:00:00

  • Investigation of the catalytic mechanism of yeast inorganic pyrophosphatase.

    abstract::P1,P2-Bidentate Co(NH3)4PP was found to be a competitive inhibitor of pyrophosphatase vs. MgPP (Kis = 8.7 mM, pH 7) and, in the presence of Mg2+, an active substrate as well. P1,P2-Bidentate Cr(III) complexes of pyrophosphate, imidodiphosphate, and methylenediphosphonate were also competitive inhibitors vs. MgPP (pH 5...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00517a021

    authors: Knight WB,Fitts SW,Dunaway-Mariano D

    更新日期:1981-07-07 00:00:00

  • An internal cysteine plays a role in the maintenance of the latency of human fibroblast collagenase.

    abstract::The cDNA that encodes the proenzyme form of human fibroblast collagenase has been expressed in Escherichia coli. It has been shown by a number of criteria to be functionally identical with the enzyme isolated from human sources. Mutations of each of three cysteine residues found in procollagenase were constructed by s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00217a008

    authors: Windsor LJ,Birkedal-Hansen H,Birkedal-Hansen B,Engler JA

    更新日期:1991-01-22 00:00:00

  • Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

    abstract::15N-labeled hen lysozyme has been studied by 2D and 3D NMR in order to characterize its dynamic behavior. The resonances of all main-chain amide nitrogen atoms were assigned, as were resonances of nitrogen atoms in 28 side chains. Relaxation measurements for the main-chain and arginine and tryptophan side-chain 15N nu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00012a023

    authors: Buck M,Boyd J,Redfield C,MacKenzie DA,Jeenes DJ,Archer DB,Dobson CM

    更新日期:1995-03-28 00:00:00

  • Time-resolved absorption and emission show that the CP43' antenna ring of iron-stressed synechocystis sp. PCC6803 is efficiently coupled to the photosystem I reaction center core.

    abstract::Excitation energy transfer and trapping processes in an iron stress-induced supercomplex of photosystem I from the cyanobacterium Synechocystis sp. PCC6803 were studied by time-resolved absorption and fluorescence spectroscopy on femtosecond and picosecond time scales. The data provide evidence that the energy transfe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026987u

    authors: Melkozernov AN,Bibby TS,Lin S,Barber J,Blankenship RE

    更新日期:2003-04-08 00:00:00

  • Purification and partial characterization of rat liver folate binding protein: cytosol I.

    abstract::The high molecular weight folate binding protein of rat liver cytosol has been purified to apparent homogeneity. Purification was achieved by using a combination of gel filtration, O-(diethylaminoethyl)cellulose chromatography, and affinity chromatography. This folate binding protein was initially identified during pu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00261a036

    authors: Cook RJ,Wagner C

    更新日期:1982-08-31 00:00:00

  • X-ray structure of ornithine decarboxylase from Trypanosoma brucei: the native structure and the structure in complex with alpha-difluoromethylornithine.

    abstract::Ornithine decarboxylase (ODC) is a pyridoxal 5'-phosphate (PLP) dependent homodimeric enzyme. It is a recognized drug target against African sleeping sickness, caused by Trypanosoma brucei. One of the currently used drugs, alpha-difluoromethylornithine (DFMO), is a suicide inhibitor of ODC. The structure of the T. bru...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9915115

    authors: Grishin NV,Osterman AL,Brooks HB,Phillips MA,Goldsmith EJ

    更新日期:1999-11-16 00:00:00

  • Glutathione reductase turned into trypanothione reductase: structural analysis of an engineered change in substrate specificity.

    abstract::Trypanosoma and Leishmania, pathogens responsible for diseases such as African sleeping sickness, Chagas' heart disease, or Oriental sore, are two of the very few genera that do not use the ubiquitous glutathione/glutathione reductase system to keep a stable cellular redox balance. Instead, they rely on trypanothione ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963074p

    authors: Stoll VS,Simpson SJ,Krauth-Siegel RL,Walsh CT,Pai EF

    更新日期:1997-05-27 00:00:00

  • Nonphotochemical quenching of excitation energy in photosystem II. A picosecond time-resolved study of the low yield of chlorophyll a fluorescence induced by single-turnover flash in isolated spinach thylakoids.

    abstract::Chlorophyll a fluorescence emission is widely used as a noninvasive measure of a number of parameters related to photosynthetic efficiency in oxygenic photosynthetic organisms. The most important component for the estimation of photochemistry is the relative increase in fluorescence yield between dark-adapted samples ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9806854

    authors: Vasil'ev S,Bruce D

    更新日期:1998-08-04 00:00:00

  • Attenuation of DNA-protein interactions associated with intrinsic, sequence-dependent DNA curvature.

    abstract::Inherently curved DNA segments, associated with short runs of adenines, have been identified in many gene regulatory regions, yet their physiological significance remains unknown. The observations reported in this study indicate that intrinsically bent nucleic acid fragments are characterized by substantially attenuat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00123a019

    authors: Shatzky-Schwartz M,Hiller Y,Reich Z,Ghirlando R,Weinberger S,Minsky A

    更新日期:1992-03-03 00:00:00

  • Biologically active sequences in the mouse laminin alpha3 chain G domain.

    abstract::The laminin alpha3 chain is mainly expressed at the skin, and its C-terminal G domain has a critical role in multiple biological functions. We screened for biologically active sites on the mouse laminin alpha3 chain G domain using 107 synthetic peptides on coated plates and conjugated to Sepharose beads with HT1080 hu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901421t

    authors: Urushibata S,Katagiri F,Takaki S,Yamada Y,Fujimori C,Hozumi K,Kikkawa Y,Kadoya Y,Nomizu M

    更新日期:2009-11-10 00:00:00

  • DNA damage levels and biochemical repair capacities associated with XRCC1 deficiency.

    abstract::Base excision repair (BER) is the major corrective pathway for most spontaneous, oxidative, and alkylation DNA base and sugar damage. X-ray cross-complementing 1 (XRCC1) has been suggested to function at nearly every step of this repair process, primarily through direct protein-protein interactions. Using whole cell e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051161o

    authors: Wong HK,Kim D,Hogue BA,McNeill DR,Wilson DM 3rd

    更新日期:2005-11-01 00:00:00

  • Role of entropic interactions in viral capsids: single amino acid substitutions in P22 bacteriophage coat protein resulting in loss of capsid stability.

    abstract::Bacteriophage P22 is a double-stranded DNA containing phage. Its morphogenetic pathway requires the formation of a precursor procapsid that subsequently matures to the capsid. The stability of bacteriophage P22 coat protein in both monomeric and polymeric forms under hydrostatic pressure has been examined previously [...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00004a003

    authors: Foguel D,Teschke CM,Prevelige PE Jr,Silva JL

    更新日期:1995-01-31 00:00:00

  • Affinity labeling of Escherichia coli phenylalanyl-tRNA synthetase at the binding site for tRNAPhe.

    abstract::Periodate-oxidized tRNA(Phe) (tRNA(oxPhe)) behaves as a specific affinity label of tetrameric Escherichia coli phenylalanyl-tRNA synthetase (PheRS). Reaction of the alpha 2 beta 2 enzyme with tRNA(oxPhe) results in the loss of tRNAPhe aminoacylation activity with covalent attachment of 2 mol of tRNA dialdehyde/mol of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00391a033

    authors: Hountondji C,Schmitter JM,Beauvallet C,Blanquet S

    更新日期:1987-08-25 00:00:00

  • Biochemical and functional characterization of recombinant Rhodnius prolixus platelet aggregation inhibitor 1 as a novel lipocalin with high affinity for adenosine diphosphate and other adenine nucleotides.

    abstract::The Rhodnius prolixus aggregation inhibitor 1 (RPAI-1) is a novel blood-sucking salivary molecule that binds to ADP and attenuates platelet aggregation. In this report, we determine the binding constants and specificity of RPAI-1 for adenine nucleotides and its functional significance. By the Hummel-Dreyer method of e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011015s

    authors: Francischetti IM,Andersen JF,Ribeiro JM

    更新日期:2002-03-19 00:00:00

  • WIN 17317-3, a new high-affinity probe for voltage-gated sodium channels.

    abstract::The iminodihydroquinoline WIN 17317-3 was previously shown to inhibit selectively the voltage-gated potassium channels, K(v)1.3 and K(v)1.4 [Hill, R. J., et al. (1995) Mol. Pharmacol. 48, 98-104; Nguyen, A., et al. (1996) Mol. Pharmacol. 50, 1672-1679]. Since these channels are found in brain, radiolabeled WIN 17317-3...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990336p

    authors: Wanner SG,Glossmann H,Knaus HG,Baker R,Parsons W,Rupprecht KM,Brochu R,Cohen CJ,Schmalhofer W,Smith M,Warren V,Garcia ML,Kaczorowski GJ

    更新日期:1999-08-24 00:00:00

  • Erythrocyte band 3 protein: evidence for multiple membrane-crossing segments in the 17 000-dalton chymotryptic fragment.

    abstract::We have investigated the topology of the band 3 protein of the human erythrocyte membrane by a combination of chemical labeling and proteolytic cleavage. The N-terminal third of the membrane-bound domain of band 3 is a 17 000-dalton chymotryptic fragment that is known to traverse the membrane an odd number of times. A...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00321a024

    authors: Jennings ML,Nicknish JS

    更新日期:1984-12-18 00:00:00

  • Stimulation of RecA-mediated D-loop formation by oligonucleotide-directed triple-helix formation: guided homologous recombination (GOREC).

    abstract::Oligonucleotide-directed triple helix formation provides an elegant rational basis for gene-specific DNA targeting and has been widely used to interfere with gene expression ("antigene" strategies) and as a molecular tool for biological studies. Various strategies have been developed to introduce sequence modification...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001605a

    authors: Biet E,Maurisse R,Dutreix M,Sun Js

    更新日期:2001-02-13 00:00:00

  • Indolequinone inhibitors of NRH:quinone oxidoreductase 2. Characterization of the mechanism of inhibition in both cell-free and cellular systems.

    abstract::We describe a series of indolequinones as efficient mechanism-based inhibitors of NRH:quinone oxidoreductase 2 (NQO2) for use either in cellular or cell-free systems. Compounds were designed to be reduced in the active site of the enzyme leading to loss of a substituted phenol leaving group and generation of a reactiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2002967

    authors: Yan C,Dufour M,Siegel D,Reigan P,Gomez J,Shieh B,Moody CJ,Ross D

    更新日期:2011-08-09 00:00:00

  • Effects of a surfactant-associated protein and calcium ions on the structure and surface activity of lung surfactant lipids.

    abstract::Previous studies have demonstrated that lung-specific proteins are associated with surfactant lipids, particularly the highly surface active subfraction known as tubular myelin. We have isolated a surfactant-associated protein complex with molecular weight components of 36 000, 32 000, and 28 000 and reassembled it wi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00322a026

    authors: Hawgood S,Benson BJ,Hamilton RL Jr

    更新日期:1985-01-01 00:00:00

  • Cryoenzymic studies on actomyosin ATPase. Evidence that the degree of saturation of actin with myosin subfragment 1 affects the kinetics of the binding of ATP.

    abstract::The initial steps of actomyosin subfragment 1 (acto-S1) ATPase (dissociation and binding of ATP) were studied at -15 degrees C with 40% ethylene glycol as antifreeze. The dissociation kinetics were followed by light scattering in a stopped-flow apparatus, and the binding of ATP was followed by the ATP chase method in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00459a026

    authors: Tesi C,Travers F,Barman T

    更新日期:1990-02-20 00:00:00

  • Comparative EPR and redox studies of three prokaryotic enzymes of the xanthine oxidase family: quinoline 2-oxidoreductase, quinaldine 4-oxidase, and isoquinoline 1-oxidoreductase.

    abstract::For three prokaryotic enzymes of the xanthine oxidase family, namely quinoline 2-oxidoreductase, quinaldine 4-oxidase, and isoquinoline 1-oxidoreductase, the electron transfer centers were investigated by electron paramagnetic resonance. The enzymes are containing a molybdenum-molybdopterin cytosine dinucleotide cofac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970581d

    authors: Canne C,Stephan I,Finsterbusch J,Lingens F,Kappl R,Fetzner S,Hüttermann J

    更新日期:1997-08-12 00:00:00

  • Dimerization of the extracellular domain of the erythropoietin (EPO) receptor by EPO: one high-affinity and one low-affinity interaction.

    abstract::Although there is considerable evidence that signaling by the erythropoietin (EPO) receptor is initiated when it is dimerized by binding EPO, it has been previously reported that the soluble extracellular domains of the EPO receptor (sEPOR) are not dimerized in the presence of EPO and are able to form only 1:1 complex...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9524272

    authors: Philo JS,Aoki KH,Arakawa T,Narhi LO,Wen J

    更新日期:1996-02-06 00:00:00

  • Biochemical and kinetic characteristics of the interaction of the antitumor antibiotic sparsomycin with prokaryotic and eukaryotic ribosomes.

    abstract::Using 125I-labeled phenol-alanine sparsomycin, an analogue of sparsomycin having higher biological activity than the unmodified antibiotic, we studied the requirements and the characteristics of its interaction with the ribosome. The drug does not bind to either isolated ribosomal subunits or reconstituted whole ribos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00104a011

    authors: Lazaro E,van den Broek LA,San Felix A,Ottenheijm HC,Ballesta JP

    更新日期:1991-10-08 00:00:00

  • Comparison of two metal-dependent pyruvate aldolases related by convergent evolution: substrate specificity, kinetic mechanism, and substrate channeling.

    abstract::HpaI and BphI are two pyruvate class II aldolases found in aromatic meta-cleavage degradation pathways that catalyze similar reactions but are not related in sequence. Steady-state kinetic analysis of the aldol addition reactions and product inhibition assays showed that HpaI exhibits a rapid equilibrium random order ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100251u

    authors: Wang W,Baker P,Seah SY

    更新日期:2010-05-04 00:00:00

  • Recombinant hemoglobin(alpha 29leucine --> phenylalanine, alpha 96valine --> tryptophan, beta 108asparagine --> lysine) exhibits low oxygen affinity and high cooperativity combined with resistance to autoxidation.

    abstract::Using our hemoglobin expression system in Escherichia coli, we have constructed three recombinant hemoglobins (rHbs) with amino acid substitutions located in the alpha(1)beta(1) and alpha(1)beta(2) subunit interfaces and in the distal heme pocket of the alpha-chain: rHb(alphaV96W, betaN108K), rHb(alphaL29F, alphaV96W,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991271t

    authors: Jeong ST,Ho NT,Hendrich MP,Ho C

    更新日期:1999-10-05 00:00:00

  • Detailed kinetic analysis of a family 52 glycoside hydrolase: a beta-xylosidase from Geobacillus stearothermophilus.

    abstract::Geobacillus stearothermophilus T-6 encodes for a beta-xylosidase (XynB2) from family 52 of glycoside hydrolases that was previously shown to hydrolyze its substrate with net retention of the anomeric configuration. XynB2 significantly prefers substrates with xylose as the glycone moiety and exhibits a typical bell-sha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034505o

    authors: Bravman T,Zolotnitsky G,Belakhov V,Shoham G,Henrissat B,Baasov T,Shoham Y

    更新日期:2003-09-09 00:00:00