Purified internal G-domain of translational initiation factor IF-2 displays guanine nucleotide binding properties.

Abstract:

:Translational initiation factor IF-2 is involved in a multistep pathway leading to the synthesis of the first peptide bond. IF-2 is a guanine nucleotide binding protein (G-protein) and catalyzes GTP hydrolysis in the presence of ribosomes. According to sequence homologies with other G-proteins, particularly EF-Tu, a theoretical model for the tertiary structure of the putative G-domain of IF-2 has been previously proposed [Cenatiempo, Y., Deville, F., Dondon, J., Grunberg-Manago, M., Hershey, J. W. B., Hansen, H. F., Petersen, H. U., Clark, B. F. C., Kjeldgaard, M., La Cour, T. F. M., Mortensen, K. K., & Nyborg, J. (1987) Biochemistry 26, 5070-5076]. A short fragment of IF-2 encompassing the putative G-domain was purified by limited proteolysis of a chimeric protein, synthesized from a gene fusion, between a segment of the IF-2 gene and lacZ. The N- and C-terminal sequences of this IF-2 peptide were characterized. Its calculated length is 181 amino acids and its molecular mass 19.4 kDa, whereas it migrates at 14 kDa in SDS-polyacrylamide gels. This segment of IF-2 can form binary complexes with GDP and can be cross-linked to GTP, therefore indicating that it really corresponds to the G-domain. However, in contrast to the situation described for the purified G-domain of EF-Tu, the IF-2 fragment did not hydrolyze GTP even in the presence of ribosomes. It is assumed that active centers of IF-2 located outside the G-domain are needed for the latter reaction.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Vachon G,Laalami S,Grunberg-Manago M,Julien R,Cenatiempo Y

doi

10.1021/bi00493a031

subject

Has Abstract

pub_date

1990-10-16 00:00:00

pages

9728-33

issue

41

eissn

0006-2960

issn

1520-4995

journal_volume

29

pub_type

杂志文章
  • Generality of the NUX rule: kinetic analysis of the results of systematic mutations in the trinucleotide at the cleavage site of hammerhead ribozymes.

    abstract::In order to study in detail the generality of the NUX (N = A, U, G, or C; X = A, U, or C) rule for the GUC triplet adjacent to the cleavage site in hammerhead ribozymes, two kinetic parameters, namely, kcat and Km, were determined for substrates with mutations in this triplet, which included double mutants with mutati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00011a020

    authors: Shimayama T,Nishikawa S,Taira K

    更新日期:1995-03-21 00:00:00

  • Regulation of elongation factor-2 kinase by pH.

    abstract::Elongation factor-2 kinase (eEF-2K) is a Ca(2+)/calmodulin-dependent protein kinase that phosphorylates and inactivates eEF-2 and that can regulate the rate of protein synthesis at the elongation stage. Here we report that a slight decrease in pH, within the range observed in vivo, leads to a dramatic activation of eE...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026494p

    authors: Dorovkov MV,Pavur KS,Petrov AN,Ryazanov AG

    更新日期:2002-11-12 00:00:00

  • Direct visualization of the binding of c-Myc/Max heterodimeric b-HLH-LZ to E-box sequences on the hTERT promoter.

    abstract::Myc and Max belong to the b-HLH-LZ family of transcription factors. Heterodimerization between Myc and Max or homodimerization of Max allows these proteins to bind their cognate DNA sequence known as the E-box (CACGTG). Recent evidence has suggested that the c-Myc/Max heterodimeric b-HLH-LZ could interact to form a he...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700076m

    authors: Lebel R,McDuff FO,Lavigne P,Grandbois M

    更新日期:2007-09-11 00:00:00

  • Mutation at active site lysine 212 to arginine uncouples the glycosylase activity from the lyase activity of human endonuclease III.

    abstract::The human endonuclease III (hNTH1) is an important DNA glycosylase with associated abasic lyase activity. We previously demonstrated that the K212Q mutant was totally inactive, while the K212R mutant had reduced DNA glycosylase/lyase activity and could form a covalent complex with the substrate DNA upon reduction. We ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011053b

    authors: Liu X,Roy R

    更新日期:2001-11-13 00:00:00

  • Substrate-induced conformational changes of melibiose permease from Escherichia coli studied by infrared difference spectroscopy.

    abstract::Fourier transform infrared difference spectroscopy has been used to obtain information about substrate-induced structural changes of the melibiose permease (MelB) from Escherichia coli reconstituted into liposomes. Binding of the cosubstrate Na(+) gives rise to several peaks in the amide I and II regions of the differ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048301z

    authors: León X,Lórenz-Fonfría VA,Lemonnier R,Leblanc G,Padrós E

    更新日期:2005-03-08 00:00:00

  • Resonance energy transfer between green fluorescent protein variants: complexities revealed with myosin fusion proteins.

    abstract::Green fluorescent protein and its variants are frequently used as Förster (fluorescence) resonance energy transfer (FRET) pairs to determine the proximity of protein domains. We prepared fusion proteins comprising yellow fluorescent protein-Dictyostelium myosin II motor domain-cyan fluorescent protein (YFP-myosin-CFP)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060943u

    authors: Zeng W,Seward HE,Málnási-Csizmadia A,Wakelin S,Woolley RJ,Cheema GS,Basran J,Patel TR,Rowe AJ,Bagshaw CR

    更新日期:2006-09-05 00:00:00

  • Dihydropyrimidinone positive modulation of delta-subunit-containing gamma-aminobutyric acid type A receptors, including an epilepsy-linked mutant variant.

    abstract::Gamma-aminobutyric acid type A receptors (GABA(A) receptors) are ligand-gated chloride channels that play a central role in signal transmission within the mammalian central nervous system. Compounds that modulate specific GABA(A) receptor subtypes containing the delta-subunit are scarce but would be valuable research ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100119t

    authors: Lewis RW,Mabry J,Polisar JG,Eagen KP,Ganem B,Hess GP

    更新日期:2010-06-15 00:00:00

  • In vitro activity differences between proteins of the ADF/cofilin family define two distinct subgroups.

    abstract::The actin depolymerizing factor (ADF)/cofilins are an essential group of proteins that are important regulators of actin filament turnover in vivo. Although protists and yeasts express only a single member of this family, metazoans express two or more members in many cell types. In cells expressing both ADF and cofili...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049797n

    authors: Chen H,Bernstein BW,Sneider JM,Boyle JA,Minamide LS,Bamburg JR

    更新日期:2004-06-08 00:00:00

  • Benzo[a]yrenedione/benzo[a]pyrenediol oxidation-reduction couples and the generation of reactive reduced molecular oxygen.

    abstract::The ability of the isomeric quinone metabolites of benzo[a]pyrene, benzo[a]pyrene-6,12-dione, benzo[a]pyrene-1,6-dione, and benzo[a]pyrene-3,6-dione to undergo reversible, univalent oxidation-reduction cycles involving the corresponding benzo[a]pyrenediols and intermediate semiquinone radicals has been characterized. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00626a035

    authors: Lorentzen RJ,Ts'o PO

    更新日期:1977-04-05 00:00:00

  • Occurrence of a reduced nicotinamide adenine dinucleotide oxidase activity linked to a cytochrome system in renal brush border membranes.

    abstract::NADH oxidase activity has been detected in luminal membrane derived from the proximal tubules of rat kidney (brush border membranes). The cytochromes associated with these membranes [García, M.L., Benavides, J., Valdivieso, F., Mayor, F., & Giménez-Gallego, G. (1978) Biochem. Biophys. Res. Commun. 82, 738-744] were re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00562a019

    authors: Giménez-Gallego G,Benavides J,García ML,Valdivieso F

    更新日期:1980-10-14 00:00:00

  • Probing the bimolecular interactions of parathyroid hormone with the human parathyroid hormone/parathyroid hormone-related protein receptor. 1. Design, synthesis and characterization of photoreactive benzophenone-containing analogs of parathyroid hormone.

    abstract::Parathyroid hormone (PTH) regulates calcium and phosphate metabolism through a G-protein-coupled receptor which is shared with PTH-related protein (PTHrP). Therefore, structure-activity studies of PTH and PTHrP with their common receptor provide an unusual opportunity to examine the structural elements in the two horm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00033a029

    authors: Nakamoto C,Behar V,Chin KR,Adams AE,Suva LJ,Rosenblatt M,Chorev M

    更新日期:1995-08-22 00:00:00

  • Orientation of Human Microprocessor on Primary MicroRNAs.

    abstract::Single-stranded microRNAs (miRNAs) regulate gene expression by triggering mRNA degradation and/or inhibiting mRNA translation. miRNAs play important roles in various critical cellular processes and are associated with numerous human diseases, including cancer and neurodegenerative diseases. miRNA sequences are embedde...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.8b00944

    authors: Nguyen HM,Nguyen TD,Nguyen TL,Nguyen TA

    更新日期:2019-01-29 00:00:00

  • Solid state 15N NMR evidence for a complex Schiff base counterion in the visual G-protein-coupled receptor rhodopsin.

    abstract::Using the baculovirus/Sf9 cell expression system, we have incorporated 99% 15N-enriched [alpha,epsilon-15N2]-L-lysine into the rod visual pigment rhodopsin. We have subsequently investigated the protonated Schiff base (pSB) linkage in the [alpha, epsilon-15N2]Lys-rhodopsin with cross-polarization magic angle spinning ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9830157

    authors: Creemers AF,Klaassen CH,Bovee-Geurts PH,Kelle R,Kragl U,Raap J,de Grip WJ,Lugtenburg J,de Groot HJ

    更新日期:1999-06-01 00:00:00

  • Study of the adriamycin-cardiolipin complex structure using attenuated total reflection infrared spectroscopy.

    abstract::Adriamycin plays a prominent role in the treatment of leukemia and solid tumors in man. The mode of interaction of adriamycin with its nuclear target, responsible for its therapeutic effect, is known [Berman, H. M., & Young, P.R. (1981) Annu. Rev. Biophys. Bioeng. 10, 87-114]. The planar anthracycline moiety of adriam...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00380a043

    authors: Goormaghtigh E,Brasseur R,Huart P,Ruysschaert JM

    更新日期:1987-03-24 00:00:00

  • Large changes in the CRAC segment of gp41 of HIV do not destroy fusion activity if the segment interacts with cholesterol.

    abstract::The membrane-proximal external region (MPER) of the gp41 fusion protein of HIV is highly conserved among isolates of this virus and is considered a target for vaccine development. This region also appears to play a role in membrane fusion as well as localization of the virus to cholesterol-rich domains in membranes. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8014828

    authors: Vishwanathan SA,Thomas A,Brasseur R,Epand RF,Hunter E,Epand RM

    更新日期:2008-11-11 00:00:00

  • Molybdate-stabilized glucocorticoid receptor: evidence for a receptor heteromer.

    abstract::The composition of the molybdate-stabilized glucocorticoid receptor (GR) complex has been investigated with a monoclonal antibody against the steroid-binding Mr 94 000 (94K) GR protein. It was concluded that one antibody molecule binds one 94K GR molecule. This finding constituted the basis for calculating the number ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00344a041

    authors: Okret S,Wikström AC,Gustafsson JA

    更新日期:1985-11-05 00:00:00

  • Seeding of A beta fibril formation is inhibited by all three isotypes of apolipoprotein E.

    abstract::Apolipoprotein E is immunochemically localized to amyloid plaque in Alzheimer's brains, and the allelic distribution of ApoE in individuals is associated with a disposition toward Alzheimer's disease. We show here that all three ApoE isotypes exhibit a strong and specific ability to inhibit both nucleation and seeding...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961074j

    authors: Wood SJ,Chan W,Wetzel R

    更新日期:1996-09-24 00:00:00

  • NH3 Binding to the S2 State of the O2-Evolving Complex of Photosystem II: Analogue to H2O Binding during the S2 → S3 Transition.

    abstract::Ammonia binds directly to the oxygen-evolving complex of photosystem II (PSII) upon formation of the S2 intermediate, as evidenced by electron paramagnetic resonance spectroscopy. We explore the binding mode by using quantum mechanics/molecular mechanics methods and simulations of extended X-ray absorption fine struct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00974

    authors: Askerka M,Vinyard DJ,Brudvig GW,Batista VS

    更新日期:2015-09-29 00:00:00

  • Diverse properties of external and internal forms of yeast invertase derived from the same gene.

    abstract::It has been shown by genetic analysis that the external and internal invertases from Saccharomyces cerevisiae share a common structural gene [Taussig, R., & Carlson, M. (1983) Nucleic Acids Res. 11, 1943-1954]. However, the only amino acid composition of these two forms of invertase reported to date has revealed exten...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a014

    authors: Chu FK,Takase K,Guarino D,Maley F

    更新日期:1985-10-22 00:00:00

  • Crystal structure of Baeyer-Villiger monooxygenase MtmOIV, the key enzyme of the mithramycin biosynthetic pathway .

    abstract::Baeyer-Villiger monooxygenases (BVMOs), mostly flavoproteins, were shown to be powerful biocatalysts for synthetic organic chemistry applications and were also suggested to play key roles for the biosyntheses of various natural products. Here we present the three-dimensional structure of MtmOIV, a 56 kDa homodimeric F...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8023509

    authors: Beam MP,Bosserman MA,Noinaj N,Wehenkel M,Rohr J

    更新日期:2009-06-02 00:00:00

  • Functional dissection of the dimerization and enzymatic activities of Escherichia coli nitrogen regulator II and their regulation by the PII protein.

    abstract::The dimeric two-component system transmitter protein NRII (NtrB) of Escherichia coli, product of glnL (ntrB), controls transcription of nitrogen-regulated genes by catalyzing the phosphorylation and dephosphorylation of the transcription factor NRI (NtrC). Previous studies showed that the PII signal transduction prote...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000794u

    authors: Jiang P,Atkinson MR,Srisawat C,Sun Q,Ninfa AJ

    更新日期:2000-11-07 00:00:00

  • Structural polymorphism of homopurine DNA sequences. d(GGA)n and d(GGGA)n repeats form intramolecular hairpins stabilized by different base-pairing interactions.

    abstract::DNA sequences containing homopurine d(G1-3A)n tracts are known to be capable of adopting non-B-DNA conformations. The structural polymorphism of these sequences is a direct consequence of the structural properties of the homopurine d(G1-3A)n tracts. Depending on the conditions, d(GA)n DNA sequences can form antiparall...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961020+

    authors: Huertas D,Azorín F

    更新日期:1996-10-08 00:00:00

  • Mobility in the mitochondrial electron transport chain.

    abstract::The role of lateral diffusion in mitochondrial electron transport has been investigated by measuring the diffusion coefficients for lipid, cytochrome c, and cytochrome oxidase in membranes of giant mitoplasts from cuprizone-fed mice using the technique of fluorescence redistribution after photobleaching (FRAP). The di...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00331a017

    authors: Hochman J,Ferguson-Miller S,Schindler M

    更新日期:1985-05-07 00:00:00

  • Arachidonic Acid Metabolism by Human Cardiovascular CYP2J2 Is Modulated by Doxorubicin.

    abstract::Doxorubicin (DOX) is a chemotherapeutic that is used in the treatment of a wide variety of cancers. However, it causes cardiotoxicity partly because of the formation of reactive oxygen species. CYP2J2 is a human cytochrome P450 that is strongly expressed in cardiomyocytes. It converts arachidonic acid (AA) into four d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01025

    authors: Arnold WR,Baylon JL,Tajkhorshid E,Das A

    更新日期:2017-12-26 00:00:00

  • Light-induced high-spin signals from the oxygen evolving center in Ca2+-depleted photosystem II studied by dual mode electron paramagnetic resonance spectroscopy.

    abstract::Illuminating Ca2+-depleted photosystem (PS) II membranes generated two new EPR signals at g = 11 and 15 by perpendicular and parallel polarization modes, respectively. Two turnovers of the oxygen evolving center (OEC) beyond the modified S2' state are required for the appearance of these signals. The formation of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972471c

    authors: Mino H,Kawamori A,Matsukawa T,Ono T

    更新日期:1998-03-03 00:00:00

  • Formation of the full SNARE complex eliminates interactions of its individual protein components with the Kv2.1 channel.

    abstract::Previously, we have demonstrated physical and functional interactions of the voltage-gated potassium channel Kv2.1 with the plasma membrane protein components of the exocytotic SNARE complex, syntaxin 1A, and the t-SNARE, syntaxin 1A/SNAP-25, complex. Importantly, the physical interaction of Kv2.1 with syntaxin was sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800512p

    authors: Tsuk S,Lvov A,Michaelevski I,Chikvashvili D,Lotan I

    更新日期:2008-08-12 00:00:00

  • Effect of four-alpha-helix bundle cavity size on volatile anesthetic binding energetics.

    abstract::Currently, it is thought that inhalational anesthetics cause anesthesia by binding to ligand-gated ion channels. This is being investigated using four-alpha-helix bundles, small water-soluble analogues of the transmembrane domains of the "natural" receptor proteins. The study presented here specifically investigates h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034623b

    authors: Manderson GA,Michalsky SJ,Johansson JS

    更新日期:2003-09-30 00:00:00

  • Mutation and evolution of the magnesium-binding site of a class II aminoacyl-tRNA synthetase.

    abstract::Aminoacyl-tRNA synthetases contain one or three Mg(2+) ions in their catalytic sites. In addition to their role in ATP binding, these ions are presumed to play a role in catalysis by increasing the electropositivity of the alpha-phosphate and stabilizing the pentavalent transition state. In the class II aaRS, two high...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049617+

    authors: Ador L,Jaeger S,Geslain R,Martin F,Cavarelli J,Eriani G

    更新日期:2004-06-08 00:00:00

  • Penicillanic acid sulfone: an unexpected isotope effect in the interaction of 6 alpha- and 6 beta-monodeuterio and of 6,6-dideuterio derivatives with RTEM beta-lactamase from Escherichia coli.

    abstract::Penicillanic acid sulfone (1) is both a substrate and an inactivator of the RTEM beta-lactamase. About 7000 hydrolytic events occur before enzyme inactivation. The 6,6-dideuterio sulfone shows a 3-fold acceleration of both the hydrolysis reaction and the enzyme inactivation. The kinetic and spectroscopic results are n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00516a003

    authors: Brenner DG,Knowles JR

    更新日期:1981-06-23 00:00:00

  • Sequence-selective topoisomerase II inhibition by anthracycline derivatives in SV40 DNA: relationship with DNA binding affinity and cytotoxicity.

    abstract::Topoisomerase II mediated double-strand breaks produced by anthracycline analogues were studied in SV40 DNA. The compounds included doxorubicin, daunorubicin, two doxorubicin stereoisomers (4'-epimer and beta-anomer), and five chromophore-modified derivatives, with a wide range of cytotoxic activity and DNA binding af...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00454a033

    authors: Capranico G,Zunino F,Kohn KW,Pommier Y

    更新日期:1990-01-16 00:00:00