Comparison of methods to detect HIV dual infection.

Abstract:

:Current methods to detect intraclade HIV dual infection are poorly suited for determining its prevalence in large cohorts. To investigate the potential of ultra-deep sequencing to screen for dual infection, we compared it to bulk sequence-based synonymous mixture index and the current standard of single genome sequencing. The synonymous mixture index identified samples likely to harbor dual infection, while ultra-deep sequencing captured more intra-host viral diversity than single genome sequencing at approximately 40% of the cost and 20% of the laboratory and analysis time. The synonymous mixture index and ultra-deep sequencing are promising methods for rapid and cost-effective systematic identification of HIV dual infection.

authors

Pacold M,Smith D,Little S,Cheng PM,Jordan P,Ignacio C,Richman D,Pond SK

doi

10.1089/aid.2010.0042

subject

Has Abstract

pub_date

2010-12-01 00:00:00

pages

1291-8

issue

12

eissn

0889-2229

issn

1931-8405

journal_volume

26

pub_type

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