Metaproteomic and metagenomic analyses of defined oceanic microbial populations using microwave cell fixation and flow cytometric sorting.

abstract：:Methanogenesis from acetate (aceticlastic methanogenesis or syntrophic acetate oxidation (SAO) coupled with hydrogenotrophic methanogenesis) is the most important step for the biogas process. The major environmental factors influencing methanogenesis are volatile fatty acids, ammonia, pH, and temperature. In our study...

journal_title：FEMS microbiology ecology

authors： Fotidis IA,Karakashev D,Kotsopoulos TA,Martzopoulos GG,Angelidaki I

更新日期：2013-01-01 00:00:00

abstract：:Biological soil crusts (BSCs) are microbial assemblages that occur worldwide and facilitate ecosystem development by nitrogen (N) and carbon accumulation. N turnover within BSC ecosystems has been intensively studied in the past; however, shifts in the N cycle during BSC development have not been previously investigat...

journal_title：FEMS microbiology ecology

authors： Brankatschk R,Fischer T,Veste M,Zeyer J

更新日期：2013-01-01 00:00:00

abstract：:Cultivation-independent molecular approaches were used to investigate the phylogenetic composition of Archaea and the relative abundance of phylogenetically defined groups of methanogens in the leachate of a closed municipal solid waste landfill. Cloning and phylogenetic analysis of archaeal 16S rRNA gene sequences (1...

journal_title：FEMS microbiology ecology

authors： Huang LN,Chen YQ,Zhou H,Luo S,Lan CY,Qu LH

更新日期：2003-11-01 00:00:00

abstract：:Anaerobic fungi (Neocallimastigales) are active degraders of fibrous plant material in the rumen. However, only limited information is available relating to how quickly they colonize ingested feed particles. The aim of this study was to determine the dynamics of initial colonization of forage by anaerobic fungi in the...

journal_title：FEMS microbiology ecology

authors： Edwards JE,Kingston-Smith AH,Jimenez HR,Huws SA,Skøt KP,Griffith GW,McEwan NR,Theodorou MK

更新日期：2008-12-01 00:00:00

abstract：:Bacterial diversity is believed to be controlled both by bottom-up and top-down mechanisms such as nutrient competition, predation and viral lysis. We hypothesise that lytic viruses create trophic niches within bacterial communities, and thus primarily control richness and evenness, while substrate composition primari...

journal_title：FEMS microbiology ecology

authors： Töpper B,Thingstad TF,Sandaa RA

更新日期：2013-01-01 00:00:00

abstract：:Abstract In a previous study, we isolated a collection of atrazine-degrading bacteria from various soils. The aim of this study was to localise the atrazine-degrading genes in these 25 atrazine-degrading strains. In the case of the Gram-negative strains of Chelatobacter heintzii, six to seven plasmids were observed. T...

journal_title：FEMS microbiology ecology

authors： Rousseaux S,Soulas G,Hartmann A

更新日期：2002-07-01 00:00:00

abstract：:Replant diseases often occur when pome and stone fruits are grown in soil that had previously been planted with the same or similar plant species. They typically lead to reductions in plant growth, crop yield and production duration. In this project, greenhouse assays were used to identify a peach orchard soil that ca...

journal_title：FEMS microbiology ecology

authors： Bent E,Loffredo A,Yang JI,McKenry MV,Becker JO,Borneman J

更新日期：2009-05-01 00:00:00

abstract：:Construction of 16S rDNA libraries was undertaken to examine the structure of free-living bacterial communities in the estuarine system Ria de Aveiro, Portugal. Samples were collected in April 2002, from two sites representing marine (station N1) and brackish (station I6) water zones. Clones were characterized by RFLP...

journal_title：FEMS microbiology ecology

authors： Henriques IS,Almeida A,Cunha A,Correia A

更新日期：2004-08-01 00:00:00

abstract：:Soil microbial communities play an important role in nutrient cycling and nutrient availability, especially in unimproved soils. In grazed pastures, sheep urine causes local changes in nutrient concentration which may be a source of heterogeneity in microbial community structure. In the present study, we investigated ...

journal_title：FEMS microbiology ecology

authors： Nunan N,Singh B,Reid E,Ord B,Papert A,Squires J,Prosser JI,Wheatley RE,McNicol J,Millard P

更新日期：2006-05-01 00:00:00

abstract：:Aerobic anoxygenic phototrophic bacteria (AAPB) are a group of heterotrophic bacteria capable of photosynthesis. The dynamics of AAPB in the East China Sea, a typical marginal sea characterized by diverse physical-chemical and ecological conditions, were investigated from April 2002 to September 2003. The results show...

journal_title：FEMS microbiology ecology

authors： Zhang Y,Jiao N

更新日期：2007-09-01 00:00:00

abstract：:Abstract The impact of salinity on the composition and functional performance (biomass production, growth efficiency and growth rates) of bacterial communities was investigated using batch cultures growing on dissolved organic carbon from a river draining into the Northern Baltic Sea. The cultures were adjusted to riv...

journal_title：FEMS microbiology ecology

authors： Langenheder S,Kisand V,Wikner J,Tranvik LJ

更新日期：2003-07-01 00:00:00

abstract：:Glacial ice and snow are known habitats for cold-adapted microorganisms. Research on cold-adapted yeast biodiversity from Perito Moreno and Mount Tronador glaciers (Patagonia, Argentina), and production of extracellular enzymatic activity at low temperatures (5 and 18 °C), was performed and described in this study. Ni...

journal_title：FEMS microbiology ecology

authors： de Garcia V,Brizzio S,van Broock MR

更新日期：2012-11-01 00:00:00

abstract：:Abstract Laboratory studies were carried out to assess the photosynthetic and nitrogen-fixing capabilities of the gliding, filamentous cyanobacterium Phormidium corallyticum. This species is found on coral reefs, and is one of the members of a pathogenic microbial consortium called black band disease of corals, a uniq...

journal_title：FEMS microbiology ecology

authors： Richardson LL,Kuta KG

更新日期：2003-04-01 00:00:00

abstract：:Methane emissions from freshwater environments contribute substantially to global warming but are under strong control of aerobic methane-oxidizing bacteria. Recently discovered methane seeps (pockmarks) in freshwater lake sediments have the potential to bypass this control by their strong outgassing activity. Whether...

journal_title：FEMS microbiology ecology

authors： Bornemann M,Bussmann I,Tichy L,Deutzmann J,Schink B,Pester M

更新日期：2016-08-01 00:00:00

abstract：:Photosynthetic picoeukaryotes (PPEs) are major oceanic primary producers. However, the diversity of such communities remains poorly understood, especially in the northwestern (NW) Pacific. We investigated the abundance and diversity of PPEs, and recorded environmental variables, along a transect from the coast to the ...

journal_title：FEMS microbiology ecology

authors： Choi DH,An SM,Chun S,Yang EC,Selph KE,Lee CM,Noh JH

更新日期：2016-02-01 00:00:00

abstract：:Besides water, nitrogen is the limiting factor for biomass production in arid ecosystems. Global climatic changes are exacerbating aridity levels, and the response of nitrogen-transforming microorganisms to these changes is not clear yet. Using semi-arid and arid ecosystems as surrogates for conditions of increased ar...

journal_title：FEMS microbiology ecology

authors： Sher Y,Zaady E,Nejidat A

更新日期：2013-12-01 00:00:00

abstract：:We have developed a novel approach to identifying and quantifying closely related organohalide-respiring bacteria. Our approach made use of the unique genomic associations of specific reductive dehalogenase subunit A encoding genes (rdhA) that exist in known strains of Dehalococcoides mccartyi and Desulfitobacterium a...

journal_title：FEMS microbiology ecology

authors： Marshall IP,Azizian MF,Semprini L,Spormann AM

更新日期：2014-02-01 00:00:00

abstract：:Sponges are one of the most dominant organisms in marine ecosystems. One reason for their success is their association with microorganisms that are besides the host itself responsible for the chemical defence. Sponge abundances have been increasing on coral reefs in the Western Indian Ocean (WIO) and are predicted to ...

journal_title：FEMS microbiology ecology

authors： Helber SB,Steinert G,Wu YC,Rohde S,Hentschel U,Muhando CA,Schupp PJ

更新日期：2019-04-01 00:00:00

abstract：:Kombucha, historically an Asian tea-based fermented drink, has recently become trendy in Western countries. Producers claim it bears health-enhancing properties that may come from the tea or metabolites produced by its microbiome. Despite its long history of production, microbial richness and dynamics have not been fu...

journal_title：FEMS microbiology ecology

authors： Coton M,Pawtowski A,Taminiau B,Burgaud G,Deniel F,Coulloumme-Labarthe L,Fall A,Daube G,Coton E

更新日期：2017-05-01 00:00:00

abstract：:Based on a 6-year field trial in a temperate steppe in Inner Mongolia, we investigated the effects of nitrogen (N) and phosphorus (P) fertilization and mowing on the abundance and community compositions of ammonia-oxidizing Bacteria (AOB) and Archaea (AOA) upon early (May) and peak (August) plant growth using quantita...

journal_title：FEMS microbiology ecology

authors： Chen YL,Hu HW,Han HY,Du Y,Wan SQ,Xu ZW,Chen BD

更新日期：2014-07-01 00:00:00

abstract：:This paper demonstrates the first microbiological sampling of the Outokumpu deep borehole (2516 m deep) aiming at characterizing the bacterial community composition and diversity of sulphate-reducing bacteria (SRB) in Finnish crystalline bedrock aquifers. Sampling was performed using a 1500-m-long pressure-tight tube ...

journal_title：FEMS microbiology ecology

authors： Itävaara M,Nyyssönen M,Kapanen A,Nousiainen A,Ahonen L,Kukkonen I

更新日期：2011-08-01 00:00:00

abstract：:The sea anemone Entacmaea medusivora (Actiniaria, Anthozoa) commonly feeds on the golden jellyfish Mastigias papua (Rhizostomeae, Scyphozoa) which harbours an endosymbiotic dinoflagellate of the genus Cladocopium (Symbiodiniaceae). In this study, we monitored the photosynthetic activity of the endosymbiotic microalgae...

journal_title：FEMS microbiology ecology

authors： Vega de Luna F,Dang KV,Cardol M,Roberty S,Cardol P

更新日期：2019-10-01 00:00:00

abstract：:Copper (Cu)-polluted and unpolluted soils were used to study the effect of initial pollution on soil biological resistance and resilience by measuring the responses to perturbation using different parameters. Microbial biomass carbon, substrate-induced respiration and copy numbers of 16S rRNA gene were grouped as gene...

journal_title：FEMS microbiology ecology

authors： Deng H,Li XF,Cheng WD,Zhu YG

更新日期：2009-11-01 00:00:00

abstract：:The sea-surface microlayer (SML) at the boundary between atmosphere and hydrosphere represents a demanding habitat for bacteria. Wind speed is a crucial but poorly studied factor for its physical integrity. Increasing atmospheric burden of CO2, as suggested for future climate scenarios, may particularly act on this ha...

journal_title：FEMS microbiology ecology

authors： Rahlff J,Stolle C,Giebel HA,Brinkhoff T,Ribas-Ribas M,Hodapp D,Wurl O

更新日期：2017-05-01 00:00:00

abstract：:The bacterioneuston (bacteria inhabiting the air-water interface) is poorly characterized and possibly forms a unique community in the aquatic environment. In high mountain lakes, the surface film is subjected to extreme conditions of life, suggesting the development of a specific and adapted bacterioneuston community...

journal_title：FEMS microbiology ecology

authors： Hervas A,Casamayor EO

更新日期：2009-02-01 00:00:00

abstract：:The stoichiometric constraints of algal growth are well understood, whereas there is less knowledge for heterotrophic bacterioplankton. Growth of the marine bacterium Phaeobacter inhibens DSM 17395, belonging to the globally distributed Roseobacter group, was studied across a wide concentration range of NH4+ and PO43-...

journal_title：FEMS microbiology ecology

authors： Trautwein K,Feenders C,Hulsch R,Ruppersberg HS,Strijkstra A,Kant M,Vagts J,Wünsch D,Michalke B,Maczka M,Schulz S,Hillebrand H,Blasius B,Rabus R

更新日期：2017-05-01 00:00:00

abstract：:Increased warming in spring and prolonged summer drought may alter soil microbial denitrification. We measured potential denitrification activity and denitrifier marker gene abundances (nirK, nirS, nosZ) in grasslands soils in three geographic regions characterized by site-specific land-use indices (LUI) after warming...

journal_title：FEMS microbiology ecology

authors： Keil D,Niklaus PA,von Riedmatten LR,Boeddinghaus RS,Dormann CF,Scherer-Lorenzen M,Kandeler E,Marhan S

更新日期：2015-07-01 00:00:00

abstract：:The genetic diversity of 221 Mimosa pudica bacterial symbionts trapped from eight soils from diverse environments in French Guiana was assessed by 16S rRNA PCR-RFLP, REP-PCR fingerprints, as well as by phylogenies of their 16S rRNA and recA housekeeping genes, and by their nifH, nodA and nodC symbiotic genes. Interest...

journal_title：FEMS microbiology ecology

authors： Mishra RP,Tisseyre P,Melkonian R,Chaintreuil C,Miché L,Klonowska A,Gonzalez S,Bena G,Laguerre G,Moulin L

更新日期：2012-02-01 00:00:00

abstract：:Anaerobic ammonium oxidizing (anammox) bacteria are detected in many natural ecosystems and wastewater treatment plants worldwide. This study describes the enrichment of anammox bacteria in the presence of acetate. The results obtained extend the concept that the anammox bacteria can be enriched to high densities in t...

journal_title：FEMS microbiology ecology

authors： Kartal B,van Niftrik L,Rattray J,van de Vossenberg JL,Schmid MC,Sinninghe Damsté J,Jetten MS,Strous M

更新日期：2008-01-01 00:00:00

abstract：:We measured growth of a phenanthrene-degrading bacterium, Arthrobacter, strain RP17, in Forbes soil, amended with 500 µg g(-1) phenanthrene using a quantitative competitive polymerase chain reaction method. The inoculum, which was not indigenous to Forbes soil, grew from 5.55x10(5) colony forming units (cfu) g(-1) to ...

journal_title：FEMS microbiology ecology

authors： Schwartz E,V Trinh S,M Scow K

更新日期：2000-10-01 00:00:00