Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after.

Abstract:

:Organisms often respond to environmental changes by producing alternative phenotypes. Epigenetic processes such as DNA methylation may contribute to environmentally induced phenotypic variation by modifying gene expression. Changes in DNA methylation, unlike DNA mutations, can be influenced by the environment; they are stable at the time scale of an individual and present different levels of heritability. These characteristics make DNA methylation a potentially important molecular process to respond to environmental change. The aim of this review is to present the implications of DNA methylation on phenotypic variations driven by environmental changes. More specifically, we explore epigenetic concepts concerning phenotypic change in response to the environment and heritability of DNA methylation, namely the Baldwin effect and genetic accommodation. Before addressing this point, we report major differences in DNA methylation across taxa and the role of this modification in producing and maintaining environmentally induced phenotypic variation. We also present the different methods allowing the detection of methylation polymorphism. We believe this review will be helpful to molecular ecologists, in that it highlights the importance of epigenetic processes in ecological and evolutionary studies.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Angers B,Castonguay E,Massicotte R

doi

10.1111/j.1365-294X.2010.04580.x

subject

Has Abstract

pub_date

2010-04-01 00:00:00

pages

1283-95

issue

7

eissn

0962-1083

issn

1365-294X

pii

MEC4580

journal_volume

19

pub_type

杂志文章,评审
  • Complex sociogenetic organization and reproductive skew in a primitively eusocial sweat bee, Lasioglossum malachurum, as revealed by microsatellites.

    abstract::The sweat bees (Family Halictidae) are a socially diverse taxon in which eusociality has arisen independently numerous times. The obligate, primitively eusocial Lasioglossum malachurum, distributed widely throughout Europe, has been considered the zenith of sociality within halictids. A single queen heads a colony of ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01620.x

    authors: Paxton RJ,Ayasse M,Field J,Soro A

    更新日期:2002-11-01 00:00:00

  • Genetic variation in original and colonizing Drosophila buzzatii populations analysed by microsatellite loci isolated with a new PCR screening method.

    abstract::A new polymerase chain reaction-based screening method for microsatellites is presented. Using this method, we isolated 12 microsatellite loci from Drosophila buzzatii, two of which were X-linked. We applied the other 10 microsatellite loci to the analysis of genetic variation in five natural populations of D. buzzati...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01428.x

    authors: Frydenberg J,Pertoldi C,Dahlgaard J,Loeschcke V

    更新日期:2002-02-01 00:00:00

  • Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae.

    abstract::Inversion polymorphisms are responsible for many ecologically important phenotypes and are often found under balancing selection. However, the same features that ensure their large role in local adaptation-especially reduced recombination between alternate arrangements-mean that uncovering the precise loci within inve...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14880

    authors: Ayala D,Zhang S,Chateau M,Fouet C,Morlais I,Costantini C,Hahn MW,Besansky NJ

    更新日期:2019-03-01 00:00:00

  • Spatio-temporal variation in the genetic composition of wild populations of pearl oyster (Pinctada margaritifera cumingii) in French Polynesia following 10 years of juvenile translocation.

    abstract::Abstract The genetic impact of the cultural practice of spat collection and translocation between genetically distinct stocks of black-lipped pearl oyster, Pinctada margaritifera cumingii, was studied by comparing samples collected in the 1980s and 2000s from seven atolls in French Polynesia. An amova revealed homogen...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02188.x

    authors: Arnaud-Haond S,Vonau V,Bonhomme F,Boudry P,Blanc F,Prou J,Seaman T,Goyard E

    更新日期:2004-07-01 00:00:00

  • Genomic evidence for gene flow between monarchs with divergent migratory phenotypes and flight performance.

    abstract::Monarch butterflies are known for their spectacular annual migration in eastern North America, with millions of monarchs flying up to 4,500 km to overwintering sites in central Mexico. Monarchs also live west of the Rocky Mountains, where they travel shorter distances to overwinter along the Pacific Coast. It is often...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15508

    authors: Talla V,Pierce AA,Adams KL,de Man TJB,Nallu S,Villablanca FX,Kronforst MR,de Roode JC

    更新日期:2020-07-01 00:00:00

  • Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos.

    abstract::Glyptodonts were giant (some of them up to ~2400 kg), heavily armoured relatives of living armadillos, which became extinct during the Late Pleistocene/early Holocene alongside much of the South American megafauna. Although glyptodonts were an important component of Cenozoic South American faunas, their early evolutio...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13695

    authors: Mitchell KJ,Scanferla A,Soibelzon E,Bonini R,Ochoa J,Cooper A

    更新日期:2016-07-01 00:00:00

  • Climatic vulnerabilities and ecological preferences of soil invertebrates across biomes.

    abstract::Unlike plants and vertebrates, the ecological preferences, and potential vulnerabilities of soil invertebrates to environmental change, remain poorly understood in terrestrial ecosystems globally. We conducted a cross-biome survey including 83 locations across six continents to advance our understanding of the ecologi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15299

    authors: Bastida F,Eldridge DJ,Abades S,Alfaro FD,Gallardo A,García-Velázquez L,García C,Hart SC,Pérez CA,Santos F,Trivedi P,Williams MA,Delgado-Baquerizo M

    更新日期:2020-02-01 00:00:00

  • The influence of numbers on invasion success.

    abstract::The process by which a species becomes a biological invader, at a location where it does not naturally occur, can be divided into a series of sequential stages (transport, introduction, establishment and spread). A species' success at passing through each of these stages depends, in a large part, on the number of indi...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1111/mec.13075

    authors: Blackburn TM,Lockwood JL,Cassey P

    更新日期:2015-05-01 00:00:00

  • Potential adaptive divergence between subspecies and populations of snapdragon plants inferred from QST -FST comparisons.

    abstract::Phenotypic divergence among natural populations can be explained by natural selection or by neutral processes such as drift. Many examples in the literature compare putatively neutral (FST ) and quantitative genetic (QST ) differentiation in multiple populations to assess their evolutionary signature and identify cand...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15546

    authors: Marin S,Gibert A,Archambeau J,Bonhomme V,Lascoste M,Pujol B

    更新日期:2020-08-01 00:00:00

  • Strain-specific regulation of intracellular Wolbachia density in multiply infected insects.

    abstract::Vertically transmitted symbionts suffer a severe reduction in numbers when they pass through host generations, resulting in genetic homogeneity or even clonality of their populations. Wolbachia endosymbionts that induce cytoplasmic incompatibility in their hosts depart from this rule, because cytoplasmic incompatibili...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.02015.x

    authors: Mouton L,Henri H,Bouletreau M,Vavre F

    更新日期:2003-12-01 00:00:00

  • Multiple scales of genetic connectivity in a brooding coral on isolated reefs following catastrophic bleaching.

    abstract::Understanding the pattern of connectivity among populations is crucial for the development of realistic and spatially explicit population models in marine systems. Here we analysed variation at eight microsatellite loci to assess the genetic structure and to infer patterns of larval dispersal for a brooding coral, Ser...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.03187.x

    authors: Underwood JN,Smith LD,Van Oppen MJ,Gilmour JP

    更新日期:2007-02-01 00:00:00

  • Intestinal microbiota in fishes: what's known and what's not.

    abstract::High-throughput sequencing approaches have enabled characterizations of the community composition of numerous gut microbial communities, which in turn has enhanced interest in their diversity and functional relationships in different groups of vertebrates. Although fishes represent the greatest taxonomic and ecologica...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12699

    authors: Clements KD,Angert ER,Montgomery WL,Choat JH

    更新日期:2014-04-01 00:00:00

  • Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts.

    abstract::Understanding the evolutionary consequences of human-mediated introductions of domesticated strains into the wild and their subsequent admixture with natural populations is of major concern in conservation biology. However, the genomic impacts of stocking from distinct sources (locally derived vs. divergent) on the ge...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14816

    authors: Leitwein M,Gagnaire PA,Desmarais E,Berrebi P,Guinand B

    更新日期:2018-09-01 00:00:00

  • Fine-level mycorrhizal specificity in the Monotropoideae (Ericaceae): specificity for fungal species groups.

    abstract::The Monotropoideae (Ericaceae) are non-photosynthetic angiosperms that obtain fixed carbon from basidiomycete ectomycorrhizal fungi. In previous work, we showed that each plant species is associated with a single genus or a set of closely related genera of ectomycorrhizal fungi. Here we show that the level of specific...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.0962-1083.2001.01443.x

    authors: Bidartondo MI,Bruns TD

    更新日期:2002-03-01 00:00:00

  • Cohesive molecular genetic data delineate species diversity in the dinoflagellate genus Symbiodinium.

    abstract::The diversity of symbiotic dinoflagellates (Symbiodinium) in pocilloporid corals originating from various reef habitats surrounding Heron Island, southern Great Barrier Reef, was examined by targeting ribosomal, mitochondrial, and chloroplast genes using six methods that analyse for sequence differences. The ability o...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.04037.x

    authors: Sampayo EM,Dove S,Lajeunesse TC

    更新日期:2009-02-01 00:00:00

  • Extremely low genetic variability and highly structured local populations of Arabidopsis thaliana at higher latitudes.

    abstract::The genetic diversity and population structure of Arabidopsis thaliana populations from Norway were studied and compared to a worldwide sample of A. thaliana to investigate the demographic history and elucidate possible colonization routes of populations at the northernmost species limit. We genotyped 282 individuals ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04840.x

    authors: Lewandowska-Sabat AM,Fjellheim S,Rognli OA

    更新日期:2010-11-01 00:00:00

  • Gene expression patterns underlying parasite-induced alterations in host behaviour and life history.

    abstract::Many parasites manipulate their hosts' phenotype. In particular, parasites with complex life cycles take control of their intermediate hosts' behaviour and life history to increase transmission to their definitive host. The proximate mechanisms underlying these parasite-induced alterations are poorly understood. The c...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13498

    authors: Feldmeyer B,Mazur J,Beros S,Lerp H,Binder H,Foitzik S

    更新日期:2016-01-01 00:00:00

  • How to use molecular marker data to measure evolutionary parameters in wild populations.

    abstract::Estimating the genetic basis of phenotypic traits and the selection pressures acting on them are central to our understanding of the evolution and conservation of wild populations. However, obtaining such evolutionary-related parameters is not an easy task as it requires accurate information on both relatedness among ...

    journal_title:Molecular ecology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-294X.2005.02561.x

    authors: Garant D,Kruuk LE

    更新日期:2005-06-01 00:00:00

  • Assessment of stream macroinvertebrate communities with eDNA is not congruent with tissue-based metabarcoding.

    abstract::Freshwater biomonitoring programmes routinely sample aquatic macroinvertebrates. These samples are time-consuming to collect, as well as challenging and costly to identify reliably genus or species. Environmental DNA (eDNA) metabarcoding has emerged as a surrogate to traditional collection techniques and has been used...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15597

    authors: Gleason JE,Elbrecht V,Braukmann TWA,Hanner RH,Cottenie K

    更新日期:2020-08-16 00:00:00

  • Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient.

    abstract::As modern genomic tools are developed for ecologically compelling models, field manipulation experiments will become important for establishing the role of functional genomic variation in physiological acclimation and evolutionary adaptation along environmental clines. High-altitude habitats expose individuals to hypo...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.03942.x

    authors: Cheviron ZA,Whitehead A,Brumfield RT

    更新日期:2008-10-01 00:00:00

  • Stasipatric speciation: resurrecting a system to bury a hypothesis?

    abstract::The process of speciation remains a fundamental topic in evolutionary biology. Numerous models of speciation have been proposed and they are as diverse and colourful as the scientists who conceived them (Coyne & Orr 2004). One of the more controversial theories has been the 'stasipatric speciation' model, proposed by ...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-294X.2009.04278.x

    authors: Kearney M,Hewitt G

    更新日期:2009-08-01 00:00:00

  • Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias.

    abstract::Ecologists are increasingly interested in quantifying consumer diets based on food DNA in dietary samples and high-throughput sequencing of marker genes. It is tempting to assume that food DNA sequence proportions recovered from diet samples are representative of consumer's diet proportions, despite the fact that capt...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12523

    authors: Thomas AC,Jarman SN,Haman KH,Trites AW,Deagle BE

    更新日期:2014-08-01 00:00:00

  • Temporal genetic stability and high effective population size despite fisheries-induced life-history trait evolution in the North Sea sole.

    abstract::Heavy fishing and other anthropogenic influences can have profound impact on a species' resilience to harvesting. Besides the decrease in the census and effective population size, strong declines in mature adults and recruiting individuals may lead to almost irreversible genetic changes in life-history traits. Here, w...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05196.x

    authors: Cuveliers EL,Volckaert FA,Rijnsdorp AD,Larmuseau MH,Maes GE

    更新日期:2011-09-01 00:00:00

  • Identification of random amplified polymorphic DNA (RAPD) markers highly linked to sex determination in the red alga Gracilaria gracilis.

    abstract::The random amplified polymorphic DNA (RAPD) technique was employed in the haplo-diploid dioecious species Gracilaria gracilis to identify sex-linked PCR markers. Sixty-nine decamer oligonucleotide primers were tested on two bulks of DNA, one from five haploid males and the other from five haploid females. One of these...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00721.x

    authors: Martinez EA,Destombe C,Quillet MC,Valero M

    更新日期:1999-09-01 00:00:00

  • Population structure of the parasitic nematode Anguillicola crassus, an invader of declining North Atlantic eel stocks.

    abstract::Probably half of all animal species exhibit a parasitic lifestyle and numerous parasites have recently expanded their distribution and host ranges due to anthropogenic activities. Here, we report on the population genetic structure of the invasive nematode Anguillicola crassus, a parasite in freshwater eels, which rec...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.03855.x

    authors: Wielgoss S,Taraschewski H,Meyer A,Wirth T

    更新日期:2008-08-01 00:00:00

  • Genome-based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles.

    abstract::Ribosomal DNA (rDNA) copy number variation (CNV) has major physiological implications for all organisms, but how it varies for fungi, an ecologically ubiquitous and important group of microorganisms, has yet to be systemically investigated. Here, we examine rDNA CNV using an in silico read depth approach for 91 fungal...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14995

    authors: Lofgren LA,Uehling JK,Branco S,Bruns TD,Martin F,Kennedy PG

    更新日期:2019-02-01 00:00:00

  • Can clone size serve as a proxy for clone age? An exploration using microsatellite divergence in Populus tremuloides.

    abstract::In long-lived clonal plants, the overall size of a clone is often used to estimate clone age. The size of a clone, however, might be largely determined by physical or biotic interactions, obscuring the relationship between clone size and age. Here, we use the accumulation of mutations at 14 microsatellite loci to esti...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.03962.x

    authors: Ally D,Ritland K,Otto SP

    更新日期:2008-11-01 00:00:00

  • Population structure of the Chagas disease vector, Triatoma infestans, at the urban-rural interface.

    abstract::The increasing rate of biological invasions resulting from human transport or human-mediated changes to the environment has had devastating ecological and public health consequences. The kissing bug, Triatoma infestans, has dispersed through the Peruvian city of Arequipa. The biological invasion of this insect has res...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12471

    authors: Foley EA,Khatchikian CE,Hwang J,Ancca-Juárez J,Borrini-Mayori K,Quıspe-Machaca VR,Levy MZ,Brisson D,Chagas Disease Working Group in Arequipa.

    更新日期:2013-10-01 00:00:00

  • Genetic polyandry and sexual conflict in the sandbar shark, Carcharhinus plumbeus, in the western North Atlantic and Gulf of Mexico.

    abstract::To investigate patterns of polyandry in the sandbar shark (Carcharhinus plumbeus), 20 pregnant females were sampled from the western North Atlantic and Gulf of Mexico. Five species-specific microsatellite markers were used to genotype each shark and its litter. Of 20 litters, 17 (85%) were shown to have multiple sires...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.03138.x

    authors: Portnoy DS,Piercy AN,Musick JA,Burgess GH,Graves JE

    更新日期:2007-01-01 00:00:00

  • Kin grouping is insufficient to explain the inclusive fitness gains of conspecific brood parasitism in the common eider.

    abstract::Conspecific brood parasitism allows females to exploit other females' nests and enhance their reproductive output. Here, we test a recent theoretical model of how host females gain inclusive fitness from brood parasitism. High levels of relatedness between host and parasitizer can be maintained either by: (a) kin reco...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15258

    authors: Hervey SD,Barnas AF,Stechmann TJ,Rockwell RF,Ellis-Felege SN,Darby BJ

    更新日期:2019-11-01 00:00:00