Sialic acids as regulators of molecular and cellular interactions.

Abstract:

:The wide occurrence of sialic acids (Sia) in various chemical forms linked as monomers or polymers in an outstanding position in a multitude of complex carbohydrates of animals and microorganisms renders them as most versatile function modulators in cell biology and pathology. A survey is presented of recent advances in the study of the influences that Sias have as bulky hydrophilic and electronegatively charged monosaccharides on animal cells and on their interaction with microorganisms. Some highlights are: sialylation leads to increased anti-inflammatory activity of IgG antibodies, facilitates the escape of microorganisms from the host's immune system, and in polymeric form is involved in the regulation of embryogenesis and neuronal growth and function. The role of siglecs in immunoregulation, the dynamics of lymphocyte binding to selectins and the interactions of toxins, viruses, and other microorganisms with the host's Sia are now better understood. N-Glycolylneuraminic acid from food is antigenic in man and seems to have pathogenic potential. Sia O-acetylation mediated by various eukaryotic and prokaryotic O-acetyltransferases modulates the affinity of these monosaccharides to mammalian and microbial receptors and hinders apoptosis. The functionally versatile O-acetylated ganglioside GD3 is an onco-fetal antigen.

journal_name

Curr Opin Struct Biol

authors

Schauer R

doi

10.1016/j.sbi.2009.06.003

subject

Has Abstract

pub_date

2009-10-01 00:00:00

pages

507-14

issue

5

eissn

0959-440X

issn

1879-033X

pii

S0959-440X(09)00095-5

journal_volume

19

pub_type

杂志文章,评审
  • Molecular interactions investigated by multi-dimensional solid-state NMR.

    abstract::Solid-state NMR (ssNMR) offers insight into the formation of protein complexes and ligand binding for a large range of molecular sizes and binding affinities. Recent instrumental and methodological progress has enabled novel possibilities for using multi-dimensional ssNMR to study molecular 3D structures and interacti...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2006.08.003

    authors: Baldus M

    更新日期:2006-10-01 00:00:00

  • Structure and assembly of pore-forming proteins.

    abstract::Pore-forming proteins (PFPs), involved in host-pathogen interactions, are produced as soluble, generally monomeric, proteins. To convert from the soluble to the transmembrane form, PFPs assemble, in the vicinity of the target membrane, into ring-like structures, which expose sufficient hydrophobicity to drive spontane...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2010.01.013

    authors: Iacovache I,Bischofberger M,van der Goot FG

    更新日期:2010-04-01 00:00:00

  • Theoretical and computational advances in biomolecular NMR spectroscopy.

    abstract::Recent developments in experimental and computational aspects of NMR spectroscopy have had a significant impact on the accuracy and speed of macromolecular structure determination in solution, particularly with regard to systems of high complexity (such as protein complexes). These include experiments designed to prov...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(02)00302-0

    authors: Clore GM,Schwieters CD

    更新日期:2002-04-01 00:00:00

  • Designing switchable enzymes.

    abstract::The modulation of enzyme function is a key regulatory feature of biological systems. The ability to engineer synthetic enzymes that can be controlled by any arbitrary signal would enable a wide array of sensing applications and therapeutics and provide us with powerful tools for the basic study of biology. Here severa...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2009.04.007

    authors: Ostermeier M

    更新日期:2009-08-01 00:00:00

  • The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases.

    abstract::ATP- and NAD(+)-dependent DNA ligases, ATP-dependent RNA ligases and GTP-dependent mRNA capping enzymes comprise a superfamily of proteins that catalyze nucleotidyl transfer to polynucleotide 5' ends via covalent enzyme-(lysyl-N)-NMP intermediates. The superfamily is defined by five peptide motifs that line the nucleo...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2004.10.006

    authors: Shuman S,Lima CD

    更新日期:2004-12-01 00:00:00

  • Polypeptide GalNAc-Ts: from redundancy to specificity.

    abstract::Mucin-type O-glycosylation is a post-translational modification (PTM) that is predicted to occur in more than the 80% of the proteins that pass through the Golgi apparatus. This PTM is initiated by a family of polypeptide GalNAc-transferases (GalNAc-Ts) that modify Ser and Thr residues of proteins through the addition...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2018.12.007

    authors: de Las Rivas M,Lira-Navarrete E,Gerken TA,Hurtado-Guerrero R

    更新日期:2019-06-01 00:00:00

  • Complementary approaches to structure determination of icosahedral viruses.

    abstract::Few biological macromolecular complexes exhibit the combination of massive size and hierarchical, symmetrical architecture embodied in icosahedral viruses. X-ray crystallography, electron cryomicroscopy and small-angle X-ray scattering provide complementary approaches to studying these remarkable structures. Through a...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2003.09.007

    authors: Lee KK,Johnson JE

    更新日期:2003-10-01 00:00:00

  • Force-induced remodelling of proteins and their complexes.

    abstract::Force can drive conformational changes in proteins, as well as modulate their stability and the affinity of their complexes, allowing a mechanical input to be converted into a biochemical output. These properties have been utilised by nature and force is now recognised to be widely used at the cellular level. The effe...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2015.02.001

    authors: Chen Y,Radford SE,Brockwell DJ

    更新日期:2015-02-01 00:00:00

  • Formation of transient protein complexes.

    abstract::The encounter complex of two proteins is a dynamic intermediate state that guides proteins to their binding site, thus enhancing the rate of complex formation. It is particularly useful for complexes that must balance a biological requirement for high turnover with the need for specific binding, such as electron trans...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.07.009

    authors: Schilder J,Ubbink M

    更新日期:2013-12-01 00:00:00

  • Enzyme structures of the bacterial peptidoglycan and wall teichoic acid biogenesis pathways.

    abstract::The bacterial cell wall is a complex polymeric structure with essential roles in defence, survival and pathogenesis. Common to both Gram-positive and Gram-negative bacteria is the mesh-like peptidoglycan sacculus that surrounds the outer leaflet of the cytoplasmic membrane. Recent crystallographic studies of enzymes t...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2018.05.002

    authors: Caveney NA,Li FK,Strynadka NC

    更新日期:2018-12-01 00:00:00

  • Characterising GPCR-ligand interactions using a fragment molecular orbital-based approach.

    abstract::There has been fantastic progress in solving GPCR crystal structures. However, the ability of X-ray crystallography to guide the drug discovery process for GPCR targets is limited by the availability of accurate tools to explore receptor-ligand interactions. Visual inspection and molecular mechanics approaches cannot ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.03.021

    authors: Heifetz A,James T,Southey M,Morao I,Aldeghi M,Sarrat L,Fedorov DG,Bodkin MJ,Townsend-Nicholson A

    更新日期:2019-04-01 00:00:00

  • A story with a good ending: tRNA 3'-end maturation by CCA-adding enzymes.

    abstract::CCA-adding enzymes (tRNA nucleotidyltransferases) are responsible for the maturation or repair of the functional 3' end of tRNAs. These enzymes are remarkable because they polymerize the essential nucleotides CCA onto the 3' terminus of tRNA precursors without using a nucleic acid template. Recent crystal structures, ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2005.12.001

    authors: Xiong Y,Steitz TA

    更新日期:2006-02-01 00:00:00

  • Using natural sequences and modularity to design common and novel protein topologies.

    abstract::Protein design is still a challenging undertaking, often requiring multiple attempts or iterations for success. Typically, the source of failure is unclear, and scoring metrics appear similar between successful and failed cases. Nevertheless, the use of sequence statistics, modularity and symmetry from natural protein...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2016.05.007

    authors: Broom A,Trainor K,MacKenzie DW,Meiering EM

    更新日期:2016-06-01 00:00:00

  • Protein topology and allostery.

    abstract::Allostery plays important roles in many biological processes. Although all non-fibrous proteins may be allosteric, currently only a limited number of allosteric proteins are known. How allosteric regulation depends on protein topology and what are the preferred folds in allosteric proteins need to be explored. Alloste...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2020.01.011

    authors: Xie J,Lai L

    更新日期:2020-06-01 00:00:00

  • Combining electron microscopy and comparative protein structure modeling.

    abstract::Recently, advances have been made in methods and applications that integrate electron microscopy density maps and comparative modeling to produce atomic structures of macromolecular assemblies. Electron microscopy can benefit from comparative modeling through the fitting of comparative models into electron microscopy ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2005.08.001

    authors: Topf M,Sali A

    更新日期:2005-10-01 00:00:00

  • Nanobiotechnology: the fabrication and applications of chemical and biological nanostructures.

    abstract::Biology can teach the physical world of electronics, computing, materials science and manufacturing how to assemble complex functional devices and systems that operate at the molecular level. Our present capability to fabricate simple molecular tools, devices, materials and machines is primitive compared with the soph...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(00)00110-x

    authors: Lowe CR

    更新日期:2000-08-01 00:00:00

  • Macromolecular crowding: an important but neglected aspect of the intracellular environment.

    abstract::Biological macromolecules have evolved over billions of years to function inside cells, so it is not surprising that researchers studying the properties of such molecules, either in extracts or in purified form, take care to control factors that reflect the intracellular environment, such as pH, ionic strength and com...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(00)00172-x

    authors: Ellis RJ

    更新日期:2001-02-01 00:00:00

  • Atomic force microscopy imaging and pulling of nucleic acids.

    abstract::Recent advances in atomic force microscopy (AFM) imaging of nucleic acids include the visualization of DNA and RNA incorporated into devices and patterns, and into structures based on their sequences or sequence recognition. AFM imaging of nuclear structures has contributed to advances in telomere research and to our ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2004.05.005

    authors: Hansma HG,Kasuya K,Oroudjev E

    更新日期:2004-06-01 00:00:00

  • Nucleocytoplasmic O-glycosylation in protists.

    abstract::O-Glycosylation is an increasingly recognized modification of intracellular proteins in all kingdoms of life, and its occurrence in protists has been investigated to understand its evolution and its roles in the virulence of unicellular pathogens. We focus here on two kinds of glycoregulation found in unicellular euka...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.03.031

    authors: West CM,Kim HW

    更新日期:2019-06-01 00:00:00

  • Residue-based pharmacophore approaches to study protein-protein interactions.

    abstract::This review focuses on pharmacophore approaches in researching protein interfaces that bind protein ligands. Pharmacophore descriptions of binding interfaces that employ molecular dynamics simulation can account for effects of solvation and conformational flexibility. In addition, these calculations provide an approxi...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2020.12.016

    authors: Shrestha R,Fajardo JE,Fiser A

    更新日期:2021-01-21 00:00:00

  • Strategies to control the binding mode of de novo designed protein interactions.

    abstract::There has been significant recent progress in the computational design of protein interactions including the creation of novel heterodimers, homodimers, nanohedra, fibril caps and a protein crystal. Essential to these successes has been the use of innovative strategies for finding binding modes that are achievable, th...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.04.010

    authors: Der BS,Kuhlman B

    更新日期:2013-08-01 00:00:00

  • Comparison of three structures of the multidrug transporter EmrE.

    abstract::The small multidrug resistance proteins constitute a family of bacterial antiporters that confer multidrug resistance by H(+)-linked drug efflux across the bacterial cytoplasmic membrane. The structure of EmrE, the family archetype, has been determined by electron crystallography and shows that EmrE in the membrane is...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2006.06.005

    authors: Tate CG

    更新日期:2006-08-01 00:00:00

  • NMR structural studies of membrane proteins.

    abstract::The three-dimensional structures of membrane proteins are essential for understanding their functions, interactions and architectures. Their requirement for lipids has hampered structure determination by conventional approaches. With optimized samples, it is possible to apply solution NMR methods to small membrane pro...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(98)80157-7

    authors: Marassi FM,Opella SJ

    更新日期:1998-10-01 00:00:00

  • Proteomics approaches to decipher new signaling pathways.

    abstract::Cells have evolved intricate ways to propagate signals through signaling networks rich in crosstalks between signaling pathways and feedforward and feedback loops. The enzymatic products of phosphorylation-dependent signaling, namely phosphopeptides, can be identified and quantified systematically by mass spectrometry...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2016.07.008

    authors: Gingras AC,Wong CJ

    更新日期:2016-12-01 00:00:00

  • The design of linear peptides that fold as monomeric beta-sheet structures.

    abstract::Current knowledge about the determinants of beta-sheet formation has been notably improved by the structural and kinetic analysis of model peptides, by mutagenesis experiments in proteins and by the statistical analysis of the protein structure database (Protein Data Bank; PDB). In the past year, several peptides comp...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(99)80069-4

    authors: Lacroix E,Kortemme T,Lopez de la Paz M,Serrano L

    更新日期:1999-08-01 00:00:00

  • Computational and theoretical advances in studies of intrinsically disordered proteins.

    abstract::Intrinsically disordered proteins (IDPs) are increasingly realized to play diverse biological roles, ranging from molecular signaling to the formation of membraneless organelles. Their high degree of disorder makes them more challenging to study using the techniques of conventional structural biology, because any obse...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2017.01.006

    authors: Best RB

    更新日期:2017-02-01 00:00:00

  • Large-scale production of oligosaccharides using engineered bacteria.

    abstract::Rapid advances in the cloning and expression of glycosyltransferase genes, especially from bacteria, could open the way to overcoming difficulties in the mass production of oligosaccharides. The large-scale production of oligosaccharides using either glycosyltransferases isolated from engineered microorganisms or whol...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(00)00127-5

    authors: Endo T,Koizumi S

    更新日期:2000-10-01 00:00:00

  • De novo protein design: how do we expand into the universe of possible protein structures?

    abstract::Protein scientists are paving the way to a new phase in protein design and engineering. Approaches and methods are being developed that could allow the design of proteins beyond the confines of natural protein structures. This possibility of designing entirely new proteins opens new questions: What do we build? How do...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2015.05.009

    authors: Woolfson DN,Bartlett GJ,Burton AJ,Heal JW,Niitsu A,Thomson AR,Wood CW

    更新日期:2015-08-01 00:00:00

  • Probing RNA structure in vivo.

    abstract::RNA structure underpins many essential functions in biology. New chemical reagents and techniques for probing RNA structure in living cells have emerged in recent years. High-throughput, genome-wide techniques such as Structure-seq2 and DMS-MaPseq exploit nucleobase modification by dimethylsulfate (DMS) to obtain comp...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.07.008

    authors: Mitchell D 3rd,Assmann SM,Bevilacqua PC

    更新日期:2019-12-01 00:00:00

  • Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology.

    abstract::Small-angle X-ray scattering (SAXS) has emerged as an enabling integrative technique for comprehensive analyses of macromolecular structures and interactions in solution. Over the past two decades, SAXS has become a mainstay of the structural biologist's toolbox, supplying multiplexed measurements of molecular shape a...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.04.004

    authors: Brosey CA,Tainer JA

    更新日期:2019-10-01 00:00:00