Molecular interactions investigated by multi-dimensional solid-state NMR.

Abstract:

:Solid-state NMR (ssNMR) offers insight into the formation of protein complexes and ligand binding for a large range of molecular sizes and binding affinities. Recent instrumental and methodological progress has enabled novel possibilities for using multi-dimensional ssNMR to study molecular 3D structures and interactions in noncrystalline systems. Two-dimensional ssNMR correlation experiments were applied to study ligand binding in globular and membrane proteins and have enabled the investigation of molecular interfaces in the context of protein folding and aggregation. In lipid bilayers, a versatile set of ssNMR experiments has been developed to study molecular structure, topology and complex formation in a functional environment.

journal_name

Curr Opin Struct Biol

authors

Baldus M

doi

10.1016/j.sbi.2006.08.003

subject

Has Abstract

pub_date

2006-10-01 00:00:00

pages

618-23

issue

5

eissn

0959-440X

issn

1879-033X

pii

S0959-440X(06)00138-2

journal_volume

16

pub_type

杂志文章,评审
  • Rad50/SMC proteins and ABC transporters: unifying concepts from high-resolution structures.

    abstract::ATP-binding cassette (ABC)-type ATPases are chemo-mechanical engines for diverse biological pathways. ABC ATPase domains act not only in ABC transporters but also in DNA mismatch, nucleotide excision and double-strand break repair enzymes, as well as in chromosome segregation. Atomic-resolution crystal structures sugg...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(03)00037-x

    authors: Hopfner KP,Tainer JA

    更新日期:2003-04-01 00:00:00

  • Three-dimensional modeling of protein interactions and complexes is going 'omics.

    abstract::High-throughput interaction discovery initiatives have revealed the existence of hundreds of multiprotein complexes whose functions are regulated through thousands of protein-protein interactions (PPIs). However, the structural details of these interactions, often necessary to understand their function, are only avail...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2011.01.005

    authors: Stein A,Mosca R,Aloy P

    更新日期:2011-04-01 00:00:00

  • Photolyases and cryptochromes: common mechanisms of DNA repair and light-driven signaling?

    abstract::DNA photolyases are extremely efficient light-driven DNA repair enzymes that use the energy of a blue-light photon to 'inject' an electron onto UV-damaged DNA, catalyzing the splitting of mutagenic pyrimidine dimers. By contrast, cryptochromes use blue light to trigger signaling cascades in multicellular organisms, fu...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2006.01.004

    authors: Essen LO

    更新日期:2006-02-01 00:00:00

  • Clamp loaders and sliding clamps.

    abstract::A coherent view of the structure and function of DNA polymerase processivity factors (sliding clamps and clamp loaders) is emerging from recent structural studies. Crystal structures of sliding clamps from the T4 and RB69 bacteriophages, and from an archaebacterium expand the gallery of ring-shaped processivity factor...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(02)00313-5

    authors: Jeruzalmi D,O'Donnell M,Kuriyan J

    更新日期:2002-04-01 00:00:00

  • A structural framework for replication origin opening by AAA+ initiation factors.

    abstract::ATP-dependent initiation factors help process replication origins and coordinate replisome assembly to control the onset of DNA synthesis. Although the specific properties and regulatory mechanisms of initiator proteins can vary greatly between different organisms, certain nucleotide-binding elements and assembly patt...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2012.11.012

    authors: Duderstadt KE,Berger JM

    更新日期:2013-02-01 00:00:00

  • Structure of the rhodopsin dimer: a working model for G-protein-coupled receptors.

    abstract::G-protein-coupled receptors (GPCRs) participate in virtually all physiological processes. They constitute the largest and most structurally conserved family of signaling molecules. Several class C GPCRs have been shown to exist as dimers in their active form and growing evidence indicates that many, if not all, class ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2006.03.013

    authors: Fotiadis D,Jastrzebska B,Philippsen A,Müller DJ,Palczewski K,Engel A

    更新日期:2006-04-01 00:00:00

  • Designing switchable enzymes.

    abstract::The modulation of enzyme function is a key regulatory feature of biological systems. The ability to engineer synthetic enzymes that can be controlled by any arbitrary signal would enable a wide array of sensing applications and therapeutics and provide us with powerful tools for the basic study of biology. Here severa...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2009.04.007

    authors: Ostermeier M

    更新日期:2009-08-01 00:00:00

  • De novo protein design: how do we expand into the universe of possible protein structures?

    abstract::Protein scientists are paving the way to a new phase in protein design and engineering. Approaches and methods are being developed that could allow the design of proteins beyond the confines of natural protein structures. This possibility of designing entirely new proteins opens new questions: What do we build? How do...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2015.05.009

    authors: Woolfson DN,Bartlett GJ,Burton AJ,Heal JW,Niitsu A,Thomson AR,Wood CW

    更新日期:2015-08-01 00:00:00

  • Structural insights into leucine-rich repeat-containing synaptic cleft molecules.

    abstract::Synapses are cell adhesion structures specialized for signal transmission between neurons. At the synapse, presynaptic and postsynaptic terminals of neurons are functionally connected but spatially separated and form a cleft. Membrane receptor-like cell adhesion molecules and secreted proteins in the synaptic cleft (s...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.01.001

    authors: Yamagata A,Fukai S

    更新日期:2019-02-01 00:00:00

  • Phage display for engineering and analyzing protein interaction interfaces.

    abstract::Phage display is the longest-standing platform among molecular display technologies. Recent developments have extended its utility to proteins that were previously recalcitrant to phage display. The technique has played a dominant role in forming the field of synthetic binding protein engineering, where novel interfac...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2007.08.007

    authors: Sidhu SS,Koide S

    更新日期:2007-08-01 00:00:00

  • Strategies to control the binding mode of de novo designed protein interactions.

    abstract::There has been significant recent progress in the computational design of protein interactions including the creation of novel heterodimers, homodimers, nanohedra, fibril caps and a protein crystal. Essential to these successes has been the use of innovative strategies for finding binding modes that are achievable, th...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.04.010

    authors: Der BS,Kuhlman B

    更新日期:2013-08-01 00:00:00

  • Interactions of the ribosome with mRNA and tRNA.

    abstract::Recent collection of high-resolution crystal structures of the 70S ribosome with mRNA and tRNA substrates enhances our knowledge of protein synthesis principles. A novel network of interactions between the ribosome in the elongation state and mRNA downstream from the A codon suggests that mRNA is stabilized and aligne...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2010.03.002

    authors: Demeshkina N,Jenner L,Yusupova G,Yusupov M

    更新日期:2010-06-01 00:00:00

  • Structural investigation of the proton-coupled secondary transporters.

    abstract::Transmembrane proton gradients, known as Proton Motive Force (PMF), serve important physiological functions. In addition to driving ATP synthesis, PMF is harnessed by a large variety of secondary transporters to achieve 'uphill' translocation of specific substrates across the membrane. Proton-coupled secondary transpo...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.04.011

    authors: Yan N

    更新日期:2013-08-01 00:00:00

  • Whole-genome analysis: annotations and updates.

    abstract::The most important advances in the field of genome annotation over the past two years involve the use of cDNA sequences, protein structures and gene expression data to predict genes. These types of information not only improve gene identification, but they also give insights into variation in gene structure and functi...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(00)00213-x

    authors: Gaasterland T,Oprea M

    更新日期:2001-06-01 00:00:00

  • The sema domain.

    abstract::The sema domain was first defined from sequence by Kolodkin and colleagues in the early 1990s, and constitutes the distinctive structural and functional element of semaphorins, their plexin receptors and the receptor tyrosine kinases MET and RON, three protein families with major roles in development, tissue regenerat...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2004.10.010

    authors: Gherardi E,Love CA,Esnouf RM,Jones EY

    更新日期:2004-12-01 00:00:00

  • The ribosome as a versatile catalyst: reactions at the peptidyl transferase center.

    abstract::In all contemporary organisms, the active site of the ribosome--the peptidyl transferase center--catalyzes two distinct reactions, peptide bond formation between peptidyl-tRNA and aminoacyl-tRNA as well as the hydrolysis of peptidyl-tRNA with the help of a release factor. However, when provided with appropriate substr...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.04.012

    authors: Rodnina MV

    更新日期:2013-08-01 00:00:00

  • Promiscuity, impersonation and accommodation: evolution of plant specialized metabolism.

    abstract::Specialized metabolic enzymes and metabolite diversity evolve through a variety of mechanisms including promiscuity, changes in substrate specificity, modifications of gene expression and gene duplication. For example, gene duplication and substrate binding site changes led to the evolution of the glucosinolate biosyn...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2017.07.005

    authors: Leong BJ,Last RL

    更新日期:2017-12-01 00:00:00

  • Photodimerization systems for regulating protein-protein interactions with light.

    abstract::Optogenetic dimerizers are modular domains that can be utilized in a variety of versatile ways to modulate cellular biochemistry. Because of their modularity, many applications using these tools can be easily transferred to new targets without extensive engineering. While a number of photodimerizer systems are current...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.01.021

    authors: Spiltoir JI,Tucker CL

    更新日期:2019-08-01 00:00:00

  • Enzymes in the biosynthesis of aromatic polyketide antibiotics.

    abstract::Aromatic polyketides are secondary metabolites that afford some of the most common antibiotics and anti-cancer drugs currently in clinical use. Not least because of their medical importance, the biosynthesis of these compounds has attracted considerable interest during the past few years; important advances have been ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2005.10.002

    authors: Schneider G

    更新日期:2005-12-01 00:00:00

  • Myosin chaperones.

    abstract::The folding and assembly of myosin motor proteins is essential for most movement processes at the cellular, but also at the organism level. Importantly, myosins, which represent a very diverse family of proteins, require the activity of general and specialized folding factors to develop their full motor function. The ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.11.002

    authors: Hellerschmied D,Clausen T

    更新日期:2014-04-01 00:00:00

  • Mammalian prion proteins.

    abstract::The past two years have seen the extension of our knowledge on the cellular prion protein structure with new NMR data on both the hamster and human proteins. In addition, the folding dynamics of two cellular prion proteins have been elucidated. There are now several examples of recombinant prion proteins that are able...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(99)00051-2

    authors: Jackson GS,Clarke AR

    更新日期:2000-02-01 00:00:00

  • Extra Cytoplasmic Function sigma factors, recent structural insights into promoter recognition and regulation.

    abstract::Bacterial transcription initiation is controlled by sigma factors, the RNA polymerase (RNAP) subunits responsive for promoter specificity. While the primary sigma factor ensures the bulk of transcription during growth, a major strategy used by bacteria to regulate gene expression consists of modifying the RNAP promote...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2015.01.006

    authors: Campagne S,Allain FH,Vorholt JA

    更新日期:2015-02-01 00:00:00

  • Structure and assembly of pore-forming proteins.

    abstract::Pore-forming proteins (PFPs), involved in host-pathogen interactions, are produced as soluble, generally monomeric, proteins. To convert from the soluble to the transmembrane form, PFPs assemble, in the vicinity of the target membrane, into ring-like structures, which expose sufficient hydrophobicity to drive spontane...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2010.01.013

    authors: Iacovache I,Bischofberger M,van der Goot FG

    更新日期:2010-04-01 00:00:00

  • Technological advances in site-directed spin labeling of proteins.

    abstract::Molecular flexibility over a wide time range is of central importance to the function of many proteins, both soluble and membrane. Revealing the modes of flexibility, their amplitudes, and time scales under physiological conditions is the challenge for spectroscopic methods, one of which is site-directed spin labeling...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.06.008

    authors: Hubbell WL,López CJ,Altenbach C,Yang Z

    更新日期:2013-10-01 00:00:00

  • Protein-biotin interactions.

    abstract::The three-dimensional structures of several biotin-binding proteins are now known, giving insights into the molecular architecture of the binding sites for biotin. In combination with biochemical and computational approaches, these structural insights provide the basis for our present understanding of biotin-protein i...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(96)80010-8

    authors: Lindqvist Y,Schneider G

    更新日期:1996-12-01 00:00:00

  • MAD contortions: conformational dimerization boosts spindle checkpoint signaling.

    abstract::Almost two decades after their identification, the components of the mitotic checkpoint are finally revealing their structural secrets. The activation of Mad2, a central piece of the checkpoint protein machinery, is linked to the rare ability of this protein to adopt two distinct topologies. Current models of checkpoi...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2007.08.011

    authors: Mapelli M,Musacchio A

    更新日期:2007-12-01 00:00:00

  • Molecular choreography of pre-mRNA splicing by the spliceosome.

    abstract::The spliceosome executes eukaryotic precursor messenger RNA (pre-mRNA) splicing to remove noncoding introns through two sequential transesterification reactions, branching and exon ligation. The fidelity of this process is based on the recognition of the conserved sequences in the intron and dynamic compositional and ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.07.010

    authors: Wan R,Bai R,Shi Y

    更新日期:2019-12-01 00:00:00

  • The design of linear peptides that fold as monomeric beta-sheet structures.

    abstract::Current knowledge about the determinants of beta-sheet formation has been notably improved by the structural and kinetic analysis of model peptides, by mutagenesis experiments in proteins and by the statistical analysis of the protein structure database (Protein Data Bank; PDB). In the past year, several peptides comp...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(99)80069-4

    authors: Lacroix E,Kortemme T,Lopez de la Paz M,Serrano L

    更新日期:1999-08-01 00:00:00

  • Packing a punch: the mechanism of pore formation by cholesterol dependent cytolysins and membrane attack complex/perforin-like proteins.

    abstract::The bacterial cholesterol dependent cytolysins (CDCs) and membrane attack complex/perforin-like proteins (MACPF) represent two major branches of a large, exceptionally diverged superfamily. Most characterized CDC/MACPF proteins form large pores that function in immunity, venoms, and pathogenesis. Extensive structural,...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2012.04.008

    authors: Dunstone MA,Tweten RK

    更新日期:2012-06-01 00:00:00

  • Loading strategies of ring-shaped nucleic acid translocases and helicases.

    abstract::Ring-shaped nucleic acid translocases and helicases catalyze the directed and processive movement of nucleic acid strands to support essential transactions such as replication, transcription, and chromosome partitioning. Assembled typically as hexamers, ring helicase/translocase systems use coordinated cycles of nucle...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.11.006

    authors: O'Shea VL,Berger JM

    更新日期:2014-04-01 00:00:00