Fungal transcriptomics.

Abstract:

:We have now entered in the post-genomic era, where we have knowledge of plethora of fungal genomes and cutting edge technology is available to study global mRNA, protein and metabolite profiles. These so-called 'omic' technologies (transcriptomics, proteomics and metabolomics) provide the possibility to characterize plant-pathogen interactions and pathogenesis at molecular level. This article provides an overview of transcriptomics and its applications in fungal plant pathology.

journal_name

Microbiol Res

journal_title

Microbiological research

authors

Bhadauria V,Popescu L,Zhao WS,Peng YL

doi

10.1016/j.micres.2007.06.006

subject

Has Abstract

pub_date

2007-01-01 00:00:00

pages

285-98

issue

4

eissn

0944-5013

issn

1618-0623

pii

S0944-5013(07)00087-0

journal_volume

162

pub_type

杂志文章,评审
  • Characterization of enterococci populations in livestock manure using BIOLOG.

    abstract::The BIOLOG system was used to generate knowledge of enterococci populations found in fresh and dry manure of livestock (cattle (Bos taurus), horse (Equus caballus), and sheep (Ovis aires)). Six-hundred and forty Enterococcus isolates from the host sources were observed as a combined fresh manure unit and a combined dr...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2006.11.017

    authors: Graves A,Weaver RW,Entry J

    更新日期:2009-01-01 00:00:00

  • Antibacterial, antidermatophytic and antitoxigenic activities of onion (Allium cepa L.) oil.

    abstract::The inhibitory effect of onion oil against the growth of various isolates of bacteria representing Gram-positive (4 isolates) and Gram-negative (4 isolates) species were studied. Results show that onion oil was highly active against all Gram-positive bacteria tested and only one isolate (Klebsiella pneumoniae) of Gram...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/S0944-5013(11)80052-2

    authors: Zohri AN,Abdel-Gawad K,Saber S

    更新日期:1995-05-01 00:00:00

  • Enhancement of pradimicin production in Actinomadura hibisca P157-2 by metabolic engineering.

    abstract::Actinomadura hibisca P157-2 produces potent antifungal antibiotic pradimicins. To enhance pradimicin production, ACCase from Streptomyces coelicolor and two regulatory genes metK1-sp and afsR-sp from Streptomyces peuticus were overexpressed into A. hibisca using an integration vector pSET152 under the control of the s...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2011.02.007

    authors: Paudel S,Lee HC,Kim BS,Sohng JK

    更新日期:2011-12-20 00:00:00

  • Determination of laccase gene expression during degradation of 2,4,6-trinitrotoluene and its catabolic intermediates in Trametes versicolor.

    abstract::We have cloned a laccase gene fragment isolated from a Trametes versicolor strain in Korea. It showed high similarity in nucleotide sequences when compared with other fungal laccases. TNT (2,4,6-trinitrotoluene), a widely used explosive, was transformed rapidly by T. versicolor. When TNT and its catabolic intermediate...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2005.12.001

    authors: Cheong S,Yeo S,Song HG,Choi HT

    更新日期:2006-01-01 00:00:00

  • Metagenomic cloning and characterization of Na⁺ transporters from Huamachi Salt Lake in China.

    abstract::Moderately halophilic bacteria are a kind of extreme environment microorganism that can tolerate moderate salt concentrations ranging from 0.5M to 2.5M. Here, via a metagenomic library screen, we identified four putative Na(+) transporters, designated H7-Nha, H16-Mppe, H19-Cap and H35-Mrp, from moderately halophilic c...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2012.06.004

    authors: Gao M,Tao L,Chen S

    更新日期:2013-02-22 00:00:00

  • Survivability of Salmonella cells in popcorn after microwave oven and conventional cooking.

    abstract::The survivability of Salmonella cells in popcorn preparation was determined for two distinct cooking methods. The first method used a standard microwave oven. The second method used conventional cooking in a pan. Prior to thermal processing in independent experiments, 12 suspensions in a range between 1x10(3) and 8x10...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2006.03.010

    authors: Anaya I,Aguirrezabal A,Ventura M,Comellas L,Agut M

    更新日期:2008-01-01 00:00:00

  • Implication of orphan histidine kinase (OhkAsp) in biosynthesis of doxorubicin and daunorubicin in Streptomyces peucetius ATCC 27952.

    abstract::The orphan histidine kinase (HK) from Streptomyces peucetius ATCC 27952 (ohkAsp) was found to be implicated in the regulation of doxorubicin (DOX)/daunorubicin (DNR) biosynthesis, self-defense and developmental attributes. OhkAsp is a homolog of OhkA from Streptomyces coelicolor and Streptomyces avermitilis (with 73 a...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2018.05.007

    authors: Pokhrel AR,Nguyen HT,Dhakal D,Chaudhary AK,Sohng JK

    更新日期:2018-09-01 00:00:00

  • Diversity of bacteria, archaea and protozoa in a perchlorate treating bioreactor.

    abstract::A microbial consortium reducing high level of perchlorate was developed and in a fed batch bioreactor using acetate as substrate perchlorate was reduced at 0.25 g/g vss. day. Under stable performance, the microbial community structure of the reactor was analyzed through molecular and phenotypic methods. The diversity ...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2015.04.011

    authors: Anupama VN,Prajeesh PV,Anju S,Priya P,Krishnakumar B

    更新日期:2015-08-01 00:00:00

  • IscR plays a role in oxidative stress resistance and pathogenicity of a plant pathogen, Xanthomonas campestris.

    abstract::Iron-sulfur ([Fe-S]) cluster is an essential cofactor of proteins involved in various physiological processes including cellular defense against oxidative stress. In Xanthomonas campestris pv. campestris (Xcc), IscR plays a negative role in regulation of the transcription of [Fe-S] assembly genes, iscR-sufBCDS. The ex...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2014.08.004

    authors: Fuangthong M,Jittawuttipoka T,Wisitkamol R,Romsang A,Duang-nkern J,Vattanaviboon P,Mongkolsuk S

    更新日期:2015-01-01 00:00:00

  • Investigation of microbial community structure of a shallow lake after one season copper sulfate algaecide treatment.

    abstract::In present work we described, for the first time, the phylogenic structure of the microbial community in a shallow freshwater lake (Hawk Island Lake, located in the Lower Peninsula of the State of Michigan, U.S.A.) after one season (four times during May to August 2007) of CuSO₄ treatment for algae growth control. The...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2014.08.008

    authors: Song LY,Wang YQ

    更新日期:2015-01-01 00:00:00

  • Characterization of bacterial diversity in two aerated lagoons of a wastewater treatment plant using PCR-DGGE analysis.

    abstract::Aerated lagoons are commonly used for domestic and industrial wastewater treatment due to their low cost and minimal need of operational requirements. However, little information is known regarding microbial communities that inhabit these ecosystems. In this study, a 16S-DGGE approach was used to estimate bacterial di...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2007.06.005

    authors: Moura A,Tacão M,Henriques I,Dias J,Ferreira P,Correia A

    更新日期:2009-01-01 00:00:00

  • Analyses of genetic and pathogenic variability among Botrytis cinerea isolates.

    abstract::Seventy nine isolates of Botrytis cinerea were collected from different host plants and different locations of India and Nepal. All the isolates were identified as B. cinerea based on morphological features and were confirmed using B. cinerea specific primers. Differentiation among the isolates was assessed using morp...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2014.02.012

    authors: Kumari S,Tayal P,Sharma E,Kapoor R

    更新日期:2014-11-01 00:00:00

  • A phenazine-1-carboxylic acid producing polyextremophilic Pseudomonas chlororaphis (MCC2693) strain, isolated from mountain ecosystem, possesses biocontrol and plant growth promotion abilities.

    abstract::The genus Pseudomonas is known to comprise a huge diversity of species with the ability to thrive in different habitats, including those considered as extreme environments. In the present study, a psychrotolerant, wide pH tolerant and halotolerant strain of Pseudomonas chlororaphis GBPI_507 (MCC2693), isolated from th...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2016.04.017

    authors: Jain R,Pandey A

    更新日期:2016-09-01 00:00:00

  • Forest tree associated bacteria for potential biological control of Fusarium solani and of Fusarium kuroshium, causal agent of Fusarium dieback.

    abstract::Although the use of crop-associated bacteria as biological control agents of fungal diseases has gained increasing interest, the biotechnological potential of forest tree-associated microbes and their natural products has scarcely been investigated. The objective of this study was to identify bacteria or bacterial pro...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2020.126440

    authors: Báez-Vallejo N,Camarena-Pozos DA,Monribot-Villanueva JL,Ramírez-Vázquez M,Carrión-Villarnovo GL,Guerrero-Analco JA,Partida-Martínez LP,Reverchon F

    更新日期:2020-05-01 00:00:00

  • A novel Burkholderia ambifaria strain able to degrade the mycotoxin fusaric acid and to inhibit Fusarium spp. growth.

    abstract::Fusaric acid (FA) is a fungal metabolite produced by several Fusarium species responsible for wilts and root rot diseases of a great variety of plants. Bacillus spp. and Pseudomonas spp. have been considered as promising biocontrol agents against phytopathogenic Fusarium spp., however it has been demonstrated that FA ...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2017.09.008

    authors: Simonetti E,Roberts IN,Montecchia MS,Gutierrez-Boem FH,Gomez FM,Ruiz JA

    更新日期:2018-01-01 00:00:00

  • Responses of Halobacterium halobium and Sulfolobus solfataricus to hydrogen peroxide and N-methyl-N'-nitro-N-nitrosoguanidine [correction of N-methyl-N-nitrosoguanidine] exposure.

    abstract::We have examined the capacity of Halobacterium halobium and Sulfolobus solfataricus to withstand the lethal effect of hydrogen peroxide and N-methyl-N'-nitro-N-nitrosoguanidine [corrected]. We tested a variety of pretreatment regimens with both mutagens and all failed to elicit an inducible response to the lethal eff...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/s0944-5013(97)80037-7

    authors: Prail CA,Taylor WD

    更新日期:1997-09-01 00:00:00

  • Altered bacteria community dominance reduces tolerance to resident fungus and seed to seedling growth performance in maize (Zea mays L. var. DKB 177).

    abstract::Seeds are reservoirs of beneficial and harmful microorganism that modulates plant growth and health. Here, we access seed to seedling bacteriome assembly modified by seed-disinfection and the underlined effect over maize germination performance and root-seedlings microbial colonization. Seed-disinfection was performed...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2020.126643

    authors: Santos LF,Souta JF,Rocha LO,Soares CP,Santos MLC,Grativol C,Roesch LFW,Olivares FL

    更新日期:2021-02-01 00:00:00

  • Current situation of biofuel production and its enhancement by CRISPR/Cas9-mediated genome engineering of microbial cells.

    abstract::Geopolitical and economic factors have motivated the scientific community to utilize renewable energy resources. In addition to the modifications in major steps and processes of biofuel production, manipulation of microbial genome engineering tools is essential in order to find sustainable solution of continuous deple...

    journal_title:Microbiological research

    pub_type: 杂志文章,评审

    doi:10.1016/j.micres.2018.10.010

    authors: Javed MR,Noman M,Shahid M,Ahmed T,Khurshid M,Rashid MH,Ismail M,Sadaf M,Khan F

    更新日期:2019-02-01 00:00:00

  • Identification and characterization of Vietnamese coffee bacterial endophytes displaying in vitro antifungal and nematicidal activities.

    abstract::The endophytic bacteria were isolated from coffee roots and seeds in Vietnam and identified with 16S rDNA sequencing as belonging to the Actinobacteria, Firmicutes and Proteobacteria phyla with the Nocardia, Bacillus and Burkholderia as dominant genera, respectively. Out of the thirty genera recovered from Coffea cane...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2020.126613

    authors: Duong B,Nguyen HX,Phan HV,Colella S,Trinh PQ,Hoang GT,Nguyen TT,Marraccini P,Lebrun M,Duponnois R

    更新日期:2021-01-01 00:00:00

  • The Adh1 gene of the fungus Metarhizium anisopliae is expressed during insect colonization and required for full virulence.

    abstract::Zymography of alcohol dehydrogenase (ADH) activity in the entomopathogenic fungus Metarhizium anisopliae grown under various conditions revealed that micro-aerobic growth was associated with increased ADH activity. The major ADH protein, AdhIp, was purified to homogeneity by affinity chromatography and has an estimate...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2014.11.006

    authors: Callejas-Negrete OA,Torres-Guzmán JC,Padilla-Guerrero IE,Esquivel-Naranjo U,Padilla-Ballesteros MF,García-Tapia A,Schrank A,Salazar-Solís E,Gutiérrez-Corona F,González-Hernández GA

    更新日期:2015-03-01 00:00:00

  • PCR-identification of Dunaliella salina (Volvocales, Chlorophyta) and its growth characteristics.

    abstract::The saline pond microalga, Dunaliella salina (Dunal) Teod. maintained in De Walne's (basal) medium under laboratory conditions was confirmed by amplifying the chromosomal DNA of the microalga by PCR with specific primers MA1 and MA2. Seaweed extracts obtained from Sargassum wightii and Ulva lactuca were amended separa...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2006.03.006

    authors: Raja R,Hema Iswarya S,Balasubramanyam D,Rengasamy R

    更新日期:2007-01-01 00:00:00

  • Extracellular proteases from eight psychrotolerant Antarctic strains.

    abstract::Extracellular proteases from 8 Antarctic psychrotolerant Pseudomonas sp. strains were purified and characterised. All of them are neutral metalloproteases, have an apparent molecular mass of 45kDa, optimal activity at 40 degrees C and pH 7-9, retaining significant activity at pH 5-11. With the exception of P96-18, whi...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2004.03.001

    authors: Vazquez SC,Coria SH,MacCormack WP

    更新日期:2004-01-01 00:00:00

  • Molecular cloning and homology modeling of protocatechuate 3,4-dioxygenase from Pseudomonas marginata.

    abstract::The genes that encode the alpha and beta subunits of protocatechuate 3,4-dioxygenase (3,4-PCD [EC 1.13.11.3]) were cloned from a Pseudomonas marginata genomic library. These genes pcaG and pcaH, were found when screening the library for hydrolase genes. The two open reading frames of the PCD genes could be identified ...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/s0944-5013(96)80004-8

    authors: Petersen E,Zuegg J,Ribbons DW,Schwab H

    更新日期:1996-12-01 00:00:00

  • Characterization of Ffh of Mycobacterium tuberculosis and its interaction with 4.5S RNA.

    abstract::Signal recognition particle (SRP) mediates targeting of proteins to appropriate cellular compartments, which is an important process in all living organisms. In prokaryotes, SRP consists of Ffh, a protein, and 4.5S RNA that recognizes signal peptide emerging from ribosomes. The SRP (Ffh) of one the most successful int...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2012.03.002

    authors: Palaniyandi K,Veerasamy M,Narayanan S

    更新日期:2012-10-12 00:00:00

  • Antagonistic effect of enterocin CCM 4231 from Enterococcus faecium on "bryndza", a traditional Slovak dairy product from sheep milk.

    abstract::"Bryndza" is a traditional Slovak dairy product (type of soft cheese) made from sheep cheese which was ripened for 14 days. Because its manufacture, transporting and/or storing represent conditions which facilitate contamination, the effect of enterocin CCM4231 in "bryndza" was investigated with the aim to reduce the ...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1078/0944-5013-00078

    authors: Lauková A,Czikková S

    更新日期:2001-01-01 00:00:00

  • Green approach to phytopathogen: Characterization of lytic bacteriophages of Pseudomonas sp., an etiology of the bacterial blight of pomegranate.

    abstract::Two morphologically different bacteriophages were isolated from the river and soil samples from various locations of Maharashtra, India against the phytopathogen Pseudomonas sp. that was recently reported to cause a new bacterial blight of pomegranate. Both the phages belonged to the order Caudovirales representing th...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2019.126300

    authors: Jagdale S,Ahiwale S,Gajbhiye M,Kapadnis B

    更新日期:2019-11-01 00:00:00

  • New insights into the variability of lactic acid production in Lachancea thermotolerans at the phenotypic and genomic level.

    abstract::Non-conventional yeasts are increasingly applied in fermented beverage industry to obtain distinctive products with improved quality. Among these yeasts, Lachancea thermotolerans has multiple features of industrial relevance, especially the production of l(+)-lactic acid (LA), useful for the biological acidification o...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2020.126525

    authors: Gatto V,Binati RL,Lemos Junior WJF,Basile A,Treu L,de Almeida OGG,Innocente G,Campanaro S,Torriani S

    更新日期:2020-09-01 00:00:00

  • Mitochondria thioredoxin's backup role in oxidative stress resistance in Trichoderma reesei.

    abstract::Microorganisms often suffer from oxidative stress created from nutrient starvation and environmental changes. Thioredoxin (Trx) and glutathione (GSH) pathways are believed critical in related protective functions. The roles of Trx in improving abiotic stress resistance in Trichoderma reesei are still unclear. In this ...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2015.01.005

    authors: Wang G,Wang H,Xiong X,Chen S,Zhang D

    更新日期:2015-02-01 00:00:00

  • Environmental conditions shape the biofilm of the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125.

    abstract::Biofilms are the most widely distributed and successful microbial modes of life. The capacity of bacteria to colonize surfaces provides stability in the growth environment, allows the capturing of nutrients and affords protection from a range of environmental challenges and stress. Bacteria living in cold environments...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/j.micres.2018.09.010

    authors: Ricciardelli A,Casillo A,Vergara A,Balasco N,Corsaro MM,Tutino ML,Parrilli E

    更新日期:2019-01-01 00:00:00

  • Higher prevalence of Alternaria spp. in marine and river waters than in potable samples.

    abstract::Alternaria species have been recognized as important cause of allergic diseases and are considered opportunistic pathogens for immunocompromised individuals. In order to assess the contribution of waters to the spread of Alternaria, we examined 390 water samples of various origin for the presence of these microorganis...

    journal_title:Microbiological research

    pub_type: 杂志文章

    doi:10.1016/S0944-5013(00)80022-1

    authors: Arvanitidou M,Kanellou K,Constantinidis T,Katsouyannopoulos V

    更新日期:2000-04-01 00:00:00