Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription.

Abstract:

:The presence of Set2-mediated methylation of H3K36 (K36me) correlates with transcription frequency throughout the yeast genome. K36me targets the Rpd3S complex to deacetylate transcribed regions and suppress cryptic transcription initiation at certain genes. Here, using a genome-wide approach, we report that the Set2-Rpd3S pathway is generally required for controlling acetylation at coding regions. When using acetylation as a functional readout for this pathway, we discovered that longer genes and, surprisingly, genes transcribed at lower frequency exhibit a stronger dependency. Moreover, a systematic screen using high-resolution tiling microarrays allowed us to identify a group of genes that rely on Set2-Rpd3S to suppress spurious transcripts. Interestingly, most of these genes are within the group that depend on the same pathway to maintain a hypoacetylated state at coding regions. These data highlight the importance of using the functional readout of histone codes to define the roles of specific pathways.

journal_name

Genes Dev

journal_title

Genes & development

authors

Li B,Gogol M,Carey M,Pattenden SG,Seidel C,Workman JL

doi

10.1101/gad.1539307

subject

Has Abstract

pub_date

2007-06-01 00:00:00

pages

1422-30

issue

11

eissn

0890-9369

issn

1549-5477

pii

21/11/1422

journal_volume

21

pub_type

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