Dioldehydrase: an essential role for potassium ion in the homolytic cleavage of the cobalt-carbon bond in adenosylcobalamin.

Abstract:

:The complex of dioldehydrase with adenosylcobalamin (coenzyme B12) and potassium ion reacts with molecular oxygen in the absence of a substrate to oxidize coenzyme and inactivate the complex. In this article, high performance liquid chromatography and mass spectral analysis are used to identify the nucleoside products resulting from oxygen inactivation. The product profile indicates that oxygen inactivation proceeds by direct reaction of molecular oxygen with the 5'-deoxyadenosyl radical and cob(II)alamin. Formation of 5'-peroxyadenosine as the initial nucleoside product chemically correlates this reaction with aerobic, aqueous photoinduced homolytic cleavage of adenosylcobalamin (Schwartz, P. A., and Frey, P. A., (2007) Biochemistry, in press), indicating that both reactions proceed through similar chemical intermediates. The oxygen inactivation of the enzyme-coenzyme complex shows an absolute requirement for the same monocations required in catalysis by dioldehydrase. Measurements of the dissociation constants for adenosylcobalamin from potassium-free (Kd = 16 +/- 2 microM) or potassium-bound dioldehydrase (Kd = 0.8 +/- 0.2 microM) reveal that the effect of the monocation in stimulating oxygen sensitivity cannot be explained by an effect on the binding of coenzyme to the enzyme. Cross-linking experiments suggest that the full quaternary structure is assembled in the absence of potassium ion under the experimental conditions. The results indicate that dioldehydrase likely harvests the binding energy of the activating monocation to stimulate the homolytic cleavage of the Co-C5' bond in adenosylcobalamin.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Schwartz PA,Frey PA

doi

10.1021/bi700078z

subject

Has Abstract

pub_date

2007-06-19 00:00:00

pages

7293-301

issue

24

eissn

0006-2960

issn

1520-4995

journal_volume

46

pub_type

杂志文章
  • Steady-state and pre-steady-state kinetic analysis of Mycobacterium smegmatis cysteine ligase (MshC).

    abstract::Mycobacterium tuberculosis and many other members of the Actinomycetes family produce mycothiol, i.e., 1-d-myo-inosityl-2-(N-acetyl-l-cysteinyl)amido-2-deoxy-alpha-d-glucopyranoside (MSH or AcCys-GlcN-Ins), to act against oxidative and antibiotic stress. The biosynthesis of MSH is essential for cell growth and has bee...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7011492

    authors: Fan F,Luxenburger A,Painter GF,Blanchard JS

    更新日期:2007-10-09 00:00:00

  • Sulfide binding properties of truncated hemoglobins.

    abstract::The truncated hemoglobins from Bacillus subtilis (Bs-trHb) and Thermobifida fusca (Tf-trHb) have been shown to form high-affinity complexes with hydrogen sulfide in their ferric state. The recombinant proteins, as extracted from Escherichia coli cells after overexpression, are indeed partially saturated with sulfide, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901671d

    authors: Nicoletti FP,Comandini A,Bonamore A,Boechi L,Boubeta FM,Feis A,Smulevich G,Boffi A

    更新日期:2010-03-16 00:00:00

  • Dissociation of apolipoprotein E oligomers to monomer is required for high-affinity binding to phospholipid vesicles.

    abstract::The apolipoprotein apoE plays a key role in cholesterol and lipid metabolism. There are three isoforms of this protein, one of which, apoE4, is the major risk factor for Alzheimer's disease. At micromolar concentrations all lipid-free apoE isoforms exist primarily as monomers, dimers, and tetramers. However, the molec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1020106

    authors: Garai K,Baban B,Frieden C

    更新日期:2011-04-05 00:00:00

  • Energetics of internal GU mismatches in ribooligonucleotide helixes.

    abstract::Thermodynamic parameters of helix formation were measured spectroscopically for 16 oligoribonucleotides containing either internal GU mismatches or the corresponding AU pairs. Internal GU mismatches stabilize each helix, but not as much as the corresponding AU pairs. The differences in the enthalpy and entropy changes...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00367a061

    authors: Sugimoto N,Kierzek R,Freier SM,Turner DH

    更新日期:1986-09-23 00:00:00

  • Analysis of the AU-rich elements in the 3'-untranslated region of beta 2-adrenergic receptor mRNA by mutagenesis and identification of the homologous AU-rich region from different species.

    abstract::The 35000-Mr beta-adrenergic receptor mRNA binding protein (beta ARB) is induced by beta-adrenergic agonists and binds to G-protein-linked receptor mRNAs that exhibit agonist-induced destabilization. Recently, we identified a 20-nucleotide, AU-rich region in the 3'-untranslated region of the hamster beta 2-adrenergic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9913348

    authors: Tholanikunnel BG,Raymond JR,Malbon CC

    更新日期:1999-11-23 00:00:00

  • cAMP binds with high affinity and specificity to the androgen receptor from murine skeletal muscle.

    abstract::cAMP binding of the androgen receptor (AR) from murine skeletal muscle was studied. Testosterone affinity chromatography yielded androgen receptor with about 4000-fold purification. Determination of the cAMP binding in the affinity eluate, by adsorption of protein-cAMP complexes to cellulose ester filters or removal o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00423a013

    authors: Ofenloch-Hähnle B,Eisele K

    更新日期:1988-11-15 00:00:00

  • Molecular Basis for Allosteric Inhibition of GTP-Bound H-Ras Protein by a Small-Molecule Compound Carrying a Naphthalene Ring.

    abstract::The ras oncogene products (H-Ras, K-Ras, and N-Ras) have been regarded as some of the most promising targets for anticancer drug discovery because their activating mutations are frequently found in human cancers. Nonetheless, molecular targeted therapy for them is currently unavailable. Here, we report the discovery o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00680

    authors: Matsumoto S,Hiraga T,Hayashi Y,Yoshikawa Y,Tsuda C,Araki M,Neya M,Shima F,Kataoka T

    更新日期:2018-09-11 00:00:00

  • In Vitro Selection with a Site-Specifically Modified RNA Library Reveals the Binding Preferences of N6-Methyladenosine Reader Proteins.

    abstract::Epitranscriptomic RNA modifications can serve as recognition elements for the recruitment of effector proteins (i.e., "readers") to modified transcripts. While these interactions play an important role in mRNA regulation, there is a major gap in our understanding of the sequence determinants critical for the binding o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00485

    authors: Arguello AE,Leach RW,Kleiner RE

    更新日期:2019-08-06 00:00:00

  • Inhibition of neuronal sodium and potassium ion activated adenosinetriphosphatase by pyrithiamin.

    abstract::Since one of the electrophysiological effects of pyrithiamin, an antimetabolite of thiamin, suggested an interference with sodium pump mechanisms, the effect of pyrithiamin on Na+,K+-ATPase was investigated. We found that whereas preincubation of the antimetabolite with nonneuronal preparations of Na+,K+-ATPase produc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00278a023

    authors: Matsuda T,Cooper JR

    更新日期:1983-04-26 00:00:00

  • High-density-lipoprotein-induced cholesterol efflux from arterial smooth muscle cell derived foam cells: functional relationship of the cholesteryl ester cycle and eicosanoid biosynthesis.

    abstract::Eicosanoids have been implicated in the regulation of arterial smooth muscle cell (SMC) cholesteryl ester (CE) metabolism. These eicosanoids, which include prostacyclin (PGI2), stimulate CE hydrolytic activities. High-density lipoproteins (HDL), which promote cholesterol efflux, also stimulate PGI2 production, suggest...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00459a033

    authors: Pomerantz KB,Hajjar DP

    更新日期:1990-02-20 00:00:00

  • Electron transfer from cytochrome c2 to the primary donor of Rhodobacter sphaeroides reaction centers. A temperature dependence study.

    abstract::Kinetics of flash-induced electron transfer from the soluble cytochrome c2 to the primary donor (P) of the reaction center purified from the purple bacterium Rhodobacter sphaeroides R-26 were investigated by time-resolved absorption spectroscopy. Re-reduction of P+ induced by a laser pulse was measured at 1283 nm both...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00211a037

    authors: Venturoli G,Mallardi A,Mathis P

    更新日期:1993-12-07 00:00:00

  • Kinetic properties of a MNB/DYRK1A mutant suitable for the elucidation of biochemical pathways.

    abstract::Minibrain kinase/dual-specificity tyrosine phosphorylation regulated kinase 1A (MNB/DYRK1A) is a proline/arginine-directed serine/threonine kinase implicated in the learning deficits of Down syndrome. Epigallocatechin-3-gallate (EGCG), the major tea polyphenolic compound, is a potent MNB/DYRK1A inhibitor. In this stud...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060632j

    authors: Adayev T,Chen-Hwang MC,Murakami N,Wegiel J,Hwang YW

    更新日期:2006-10-03 00:00:00

  • Structure and mechanism of an ADP-glucose phosphorylase from Arabidopsis thaliana.

    abstract::The X-ray crystal structure of the At5g18200.1 protein has been determined to a nominal resolution of 2.30 A. The structure has a histidine triad (HIT)-like fold containing two distinct HIT-like motifs. The sequence of At5g18200.1 indicates a distant family relationship to the Escherichia coli galactose-1-P uridylyltr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052232m

    authors: McCoy JG,Arabshahi A,Bitto E,Bingman CA,Ruzicka FJ,Frey PA,Phillips GN Jr

    更新日期:2006-03-14 00:00:00

  • Binding of cholesterol and inhibitory peptide derivatives with the fusogenic hydrophobic sequence of F-glycoprotein of HVJ (Sendai virus): possible implication in the fusion reaction.

    abstract::Specificity of the binding of sterols and related compounds with purified F-protein (fusion protein) of the HVJ (Sendai virus) was studied by binding competition with [3H]cholesterol. Requirement for cholesterol or the A/B ring trans structure and nonrequirement for the 3-hydroxyl group were found in this binding. Bin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00404a035

    authors: Asano K,Asano A

    更新日期:1988-02-23 00:00:00

  • Modification of ribonuclease T1 specificity by random mutagenesis of the substrate binding segment.

    abstract::Attempts to modify the guanine specificity of ribonuclease T1 (RNase T1) by rationally designed amino acid substitutions failed so far. Therefore, we applied a semirational approach by randomizing the guanine binding site. A combinatorial library of approximately 1.6 million RNase T1 variants containing permutations o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9817515

    authors: Hubner B,Haensler M,Hahn U

    更新日期:1999-01-26 00:00:00

  • Photoinduced reactivity of the HIV-1 envelope glycoprotein with a membrane-embedded probe reveals insertion of portions of the HIV-1 Gp41 cytoplasmic tail into the viral membrane.

    abstract::The interactions of HIV-1 Env (gp120-gp41) with CD4 and coreceptors trigger a barrage of conformational changes in Env that drive the membrane fusion process. Various regions of gp41 have profound effects on HIV entry and budding. However, the precise interactions between gp41 and the membrane have not been elucidated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701920f

    authors: Viard M,Ablan SD,Zhou M,Veenstra TD,Freed EO,Raviv Y,Blumenthal R

    更新日期:2008-02-19 00:00:00

  • Mechanistic characterization of the bifunctional aminoglycoside-modifying enzyme AAC(3)-Ib/AAC(6')-Ib' from Pseudomonas aeruginosa.

    abstract::A recently discovered bifunctional antibiotic-resistance enzyme named AAC(3)-Ib/AAC(6')-Ib', from Pseudomonas aeruginosa, catalyzes acetylation of aminoglycoside antibiotics. Since both domains are acetyltransferases, each was cloned and purified for mechanistic studies. The AAC(3)-Ib domain appears to be highly speci...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700111z

    authors: Kim C,Villegas-Estrada A,Hesek D,Mobashery S

    更新日期:2007-05-01 00:00:00

  • Imaging and mapping heparin-binding sites on single fibronectin molecules with atomic force microscopy.

    abstract::Fibronectin is composed of multiple homologous repeats and contains many functional domains. Two major heparin-binding domains have previously been identified: the Hep I site near the amino terminus and the Hep II site near the carboxyl terminus. The Hep II site has been considered the high-affinity heparin-binding si...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991624o

    authors: Lin H,Lal R,Clegg DO

    更新日期:2000-03-28 00:00:00

  • Conformational studies of aqueous melittin: thermodynamic parameters of the monomer-tetramer self-association reaction.

    abstract::The self-association reaction in which four melittin molecules associate to form an aqueously soluble tetramer was studied by fluorescent spectroscopy. At 23 degrees C, pH 7.15, gamma/2 0.50, the dissociation constant, Kd, is 3.20 x 10(-16) M3. At 23 degrees C, gamma/2 0.60, melittin has an amino acyl group with a pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00272a026

    authors: Quay SC,Condie CC

    更新日期:1983-02-01 00:00:00

  • Structure of the type III pantothenate kinase from Bacillus anthracis at 2.0 A resolution: implications for coenzyme A-dependent redox biology.

    abstract::Coenzyme A (CoASH) is the major low-molecular weight thiol in Staphylococcus aureus and a number of other bacteria; the crystal structure of the S. aureus coenzyme A-disulfide reductase (CoADR), which maintains the reduced intracellular state of CoASH, has recently been reported [Mallett, T.C., Wallen, J.R., Karplus, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062299p

    authors: Nicely NI,Parsonage D,Paige C,Newton GL,Fahey RC,Leonardi R,Jackowski S,Mallett TC,Claiborne A

    更新日期:2007-03-20 00:00:00

  • Chemical frustration in the protein folding landscape: grand canonical ensemble simulations of cytochrome c.

    abstract::A grand canonical formalism is developed to combine discrete simulations for chemically distinct species in equilibrium. Each simulation is based on a perturbed funneled landscape. The formalism is illustrated using the alkaline-induced transitions of cytochrome c as observed by FTIR spectroscopy and with various othe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802293m

    authors: Weinkam P,Romesberg FE,Wolynes PG

    更新日期:2009-03-24 00:00:00

  • MgATP-Bound and nucleotide-free structures of a nitrogenase protein complex between the Leu 127 Delta-Fe-protein and the MoFe-protein.

    abstract::A mutant form of the nitrogenase iron protein with a deletion of residue Leu 127, located in the switch II region of the nucleotide binding site, forms a tight, inactive complex with the nitrogenase molybdenum iron (MoFe) protein in the absence of nucleotide. The structure of this complex generated with proteins from ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001645e

    authors: Chiu H,Peters JW,Lanzilotta WN,Ryle MJ,Seefeldt LC,Howard JB,Rees DC

    更新日期:2001-01-23 00:00:00

  • The C-terminus of tissue factor pathway inhibitor is essential to its anticoagulant activity.

    abstract::Tissue factor pathway inhibitor (TFPI) from different cell lines shows up to 15-fold differences in the ratio of anticoagulant to chromogenic activity. The anticoagulant activity was dependent on the purification procedure used and it was possible to isolate two fractions of recombinant TFPI. Only one of these fractio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00107a002

    authors: Nordfang O,Bjørn SE,Valentin S,Nielsen LS,Wildgoose P,Beck TC,Hedner U

    更新日期:1991-10-29 00:00:00

  • Human alpha- to zeta-thrombin cleavage occurs with neutrophil cathepsin G or chymotrypsin while fibrinogen clotting activity is retained.

    abstract::Human neutrophil cathepsin G or bovine chymotrypsin proteolytically cleaved human alpha-thrombin at the B-chain Trp148-Thr149 bond generating a new form, zeta-thrombin. While incubation of alpha-thrombin with cathepsin G at pH 7.4 and 37 degrees C resulted in a partial loss of fibrinogen clotting activity, 86 +/- 13% ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00466a017

    authors: Brezniak DV,Brower MS,Witting JI,Walz DA,Fenton JW 2nd

    更新日期:1990-04-10 00:00:00

  • HlyC, the internal protein acyltransferase that activates hemolysin toxin: the role of conserved tyrosine and arginine residues in enzymatic activity as probed by chemical modification and site-directed mutagenesis.

    abstract::Internal fatty acylation of proteins is a recognized means of modifying biological behavior. Escherichia coli hemolysin A (HlyA), a toxic protein, is transcribed as a nontoxic protein and made toxic by internal acylation of two lysine residue epsilon-amino groups; HlyC catalyzes the acyl transfer from acyl-acyl carrie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990138y

    authors: Trent MS,Worsham LM,Ernst-Fonberg ML

    更新日期:1999-07-06 00:00:00

  • Ligand stabilization of the beta 2 adrenergic receptor: effect of DTT on receptor conformation monitored by circular dichroism and fluorescence spectroscopy.

    abstract::Treatment of the beta 2 adrenergic receptor with the reducing agent dithiothreitol (DTT) is known to abolish ligand binding to the receptor. Interestingly, the loss of binding can be prevented by preoccupation of the receptor with ligand. It is unclear, however, whether the ligand blocks access of DTT to the receptor,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961619+

    authors: Lin S,Gether U,Kobilka BK

    更新日期:1996-11-19 00:00:00

  • The role of the specificity-determining loop of the integrin beta subunit I-like domain in autonomous expression, association with the alpha subunit, and ligand binding.

    abstract::Integrin beta subunits contain a highly conserved I-like domain that is known to be important for ligand binding. Unlike integrin I domains, the I-like domain requires integrin alpha and beta subunit association for optimal folding. Pactolus is a novel gene product that is highly homologous to integrin beta subunits b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi016047u

    authors: Takagi J,DeBottis DP,Erickson HP,Springer TA

    更新日期:2002-04-02 00:00:00

  • Characterization of Acyl Carrier Protein-Dependent Glycosyltransferase in Mitomycin C Biosynthesis.

    abstract::Mitomycins make up a group of antitumor natural products that are biosynthesized from aminohydroxybenzoic acid (AHBA) and N-acetylglucosamine (GlcNAc). While the biosynthetic gene cluster was reported two decades ago, the mechanism by which the two building blocks, AHBA and GlcNAc, are coupled during biosynthesis rema...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00379

    authors: Nguyen HP,Yokoyama K

    更新日期:2019-06-25 00:00:00

  • Probing the basis of domain-dependent inhibition using novel ketone inhibitors of Angiotensin-converting enzyme.

    abstract::Human angiotensin-converting enzyme (ACE) has two homologous domains, the N and C domains, with differing substrate preferences. X-ray crystal structures of the C and N domains complexed with various inhibitors have allowed identification of active site residues that might be important for the molecular basis of this ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8002605

    authors: Watermeyer JM,Kröger WL,O'Neill HG,Sewell BT,Sturrock ED

    更新日期:2008-06-03 00:00:00

  • ptl-1, a Caenorhabditis elegans gene whose products are homologous to the tau microtubule-associated proteins.

    abstract::The tau microtubule-associated proteins are axonal proteins that have been implicated in axonal outgrowth, microtubule spacing, and microtubule bundling. Moreover, tau is the major structural component of the paired helical filaments present in the brains of Alzheimer's disease patients. The Caenorhabditis elegans Gen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952646n

    authors: McDermott JB,Aamodt S,Aamodt E

    更新日期:1996-07-23 00:00:00