Binding of basic peptides to acidic lipids in membranes: effects of inserting alanine(s) between the basic residues.

Abstract:

:We studied the binding of peptides containing five basic residues to membranes containing acidic lipids. The peptides have five arginine or lysine residues and zero, one, or two alanines between the basic groups. The vesicles were formed from mixtures of a zwitterionic lipid, phosphatidylcholine, and an acidic lipid, either phosphatidylserine or phosphatidylglycerol. Measuring the binding using equilibrium dialysis, ultrafiltration, and electrophoretic mobility techniques, we found that all peptides bind to the membranes with a sigmoidal dependence on the mole fraction of acidic lipid. The sigmoidal dependence (Hill coefficient greater than 1 or apparent cooperativity) is due to both electrostatics and reduction of dimensionality and can be described by a simple model that combines Gouy-Chapman-Stern theory with mass action formalism. The adjustable parameter in this model is the microscopic association constant k between a basic residue and an acidic lipid (1 less than k less than 10 M-1). The addition of alanine residues decreases the affinity of the peptides for the membranes; two alanines inserted between the basic residues reduces k 2-fold. Equivalently, the affinity of the peptide for the membrane decreases 10-fold, probably due to a combination of local electrostatic effects and the increased loss of entropy that may occur when the more massive alanine-containing peptides bind to the membrane. The arginine peptides bind more strongly than the lysine peptides: k for an arginine residue is 2-fold higher than for a lysine residue. Our results imply that a cluster of arginine and lysine residues with interspersed electrically neutral amino acids can bind a significant fraction of a cytoplasmic protein to the plasma membrane if the cluster contains more than five basic residues.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Mosior M,McLaughlin S

doi

10.1021/bi00121a026

subject

Has Abstract

pub_date

1992-02-18 00:00:00

pages

1767-73

issue

6

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • Quantitative measurement of Ca(2+)-dependent calmodulin-target binding by Fura-2 and CFP and YFP FRET imaging in living cells.

    abstract::Calcium dynamics and its linked molecular interactions cause a variety of biological responses; thus, exploiting techniques for detecting both concurrently is essential. Here we describe a method for measuring the cytosolic Ca(2+) concentration ([Ca(2+)](i)) and protein-protein interactions within the same cell, using...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200287x

    authors: Mori MX,Imai Y,Itsuki K,Inoue R

    更新日期:2011-05-31 00:00:00

  • Role of glycosylation on the secretion and biological activity of erythropoietin.

    abstract::The erythropoietin (EPO) molecule contains four carbohydrate chains. Three contain N-linkages to asparagines at positions 24, 38, and 83, and one contains an O-linkage to a serine at position 126. We constructed human EPO variants that eliminated the three N-glycosylation sites by replacing the asparagines with glutam...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00156a003

    authors: Delorme E,Lorenzini T,Giffin J,Martin F,Jacobsen F,Boone T,Elliott S

    更新日期:1992-10-20 00:00:00

  • Characterization of a small metal binding protein from Nitrosomonas europaea.

    abstract::A small metal-binding protein (SmbP) with no known similarity to other proteins in current databases was isolated and characterized from the periplasm of Nitrosomonas europaea. The primary structure of this small (9.9 kDa) monomeric protein is characterized by a series of 10 repeats of a seven amino acid motif and an ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049318k

    authors: Barney BM,LoBrutto R,Francisco WA

    更新日期:2004-09-07 00:00:00

  • Phosphoprotein and phosphopeptide interactions with the FHA domain from Arabidopsis kinase-associated protein phosphatase.

    abstract::FHA domains are phosphoThr recognition modules found in diverse signaling proteins, including kinase-associated protein phosphatase (KAPP) from Arabidopsis thaliana. The kinase-interacting FHA domain (KI-FHA) of KAPP targets it to function as a negative regulator of some receptor-like kinase (RLK) signaling pathways i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061763n

    authors: Ding Z,Wang H,Liang X,Morris ER,Gallazzi F,Pandit S,Skolnick J,Walker JC,Van Doren SR

    更新日期:2007-03-13 00:00:00

  • Determination of Fe-CO geometry in the subunits of carbonmonoxy hemoglobin M Boston using femtosecond infrared spectroscopy.

    abstract::We have undertaken ultrafast infrared (IR) spectroscopic studies in order to elucidate the geometry of bound CO in the alpha and beta subunits of hemoglobin (Hb) M Boston 13CO. Hb M Boston is a mutant human Hb in which the distal histidine in the alpha subunits is replaced by a tyrosine. The IR absorptions of bound 13...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00073a013

    authors: Lian T,Locke B,Kitagawa T,Nagai M,Hochstrasser RM

    更新日期:1993-06-08 00:00:00

  • Using saturation-recovery EPR to measure distances in proteins: applications to photosystem II.

    abstract::The stable tyrosine radical YD. (tyrosine 160 in the D2 polypeptide) in photosystem II (PSII) exhibits nonexponential electron spin-lattice relaxation transients at low temperature. As previously reported, the tetranuclear Mn complex in PSII significantly enhances the spin-lattice relaxation of YD.. However, in Mn-dep...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00117a033

    authors: Hirsh DJ,Beck WF,Innes JB,Brudvig GW

    更新日期:1992-01-21 00:00:00

  • Assembly of a [2Fe-2S]2+ cluster in a molecular variant of Clostridium pasteurianum rubredoxin.

    abstract::The rubredoxin from Clostridium pasteurianum contains a single iron atom bound to the polypeptide chain by cysteines 6, 9, 39, and 42. The C42A variant of this protein has been prepared by site-directed mutagenesis and heterologous expression of the gene in Escherichia coli. The mutated protein was found to contain an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971775w

    authors: Meyer J,Gagnon J,Gaillard J,Lutz M,Achim C,Münck E,Pétillot Y,Colangelo CM,Scott RA

    更新日期:1997-10-28 00:00:00

  • Spectroscopic, calorimetric, and kinetic demonstration of conformational adaptation in peptide-antibody recognition.

    abstract::Little is known about the extent to which protein flexibility contributes to antigen-antibody recognition and cross-reactivity. Using short coil peptides (leucine zippers) as model antigens, we demonstrate that a monoclonal antibody can force a noncognate peptide into a conformation that is similar to the conformation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00050a035

    authors: Leder L,Berger C,Bornhauser S,Wendt H,Ackermann F,Jelesarov I,Bosshard HR

    更新日期:1995-12-19 00:00:00

  • Structure of a mouse immunoglobulin G that lacks the entire CH1 domain: protein sequencing and small-angle X-ray scattering studies.

    abstract::The structure of a short-chain IgG2a antibody, which is a member of the family of mouse anti-dansyl switch variant antibodies with identical variable regions but different heavy-chain constant regions [Dangl, J.L., Parks, D. R., Oi, V. T., & Herzenberg, L. A. (1982) Cytometry 2, 395-401], is reported. Amino acid seque...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00476a013

    authors: Igarashi T,Sato M,Katsube Y,Takio K,Tanaka T,Nakanishi M,Arata Y

    更新日期:1990-06-19 00:00:00

  • Role of the arginine-45 salt bridge in ligand dissociation from sperm whale carboxymyoglobin as probed by photoacoustic calorimetry.

    abstract::The dynamics of the enthalpy and volume changes found in the photodissociation of CO from sperm whale carboxymyoglobin and two site-directed mutants in which arginine-45 is replaced by glycine and asparagine are examined by photoacoustic calorimetry. An intermediate is observed whose lifetime at 20 degrees C is 700 ns...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00480a026

    authors: Westrick JA,Peters KS,Ropp JD,Sligar SG

    更新日期:1990-07-17 00:00:00

  • Insights into the reaction mechanism of the prolyl-acyl carrier protein oxidase involved in anatoxin-a and homoanatoxin-a biosynthesis.

    abstract::Anatoxin-a and homoanatoxin-a are two potent cyanobacterial neurotoxins. We recently reported the identification of the gene cluster responsible for the biosynthesis of these toxins as well as the in-vitro reconstitution of the first steps of this biosynthesis. We now report experimental evidence supporting the propos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200892a

    authors: Mann S,Lombard B,Loew D,Méjean A,Ploux O

    更新日期:2011-08-23 00:00:00

  • Synthetic Riboswitches: From Plug and Pray toward Plug and Play.

    abstract::In synthetic biology, metabolic engineering, and gene therapy, there is a strong demand for orthogonal or externally controlled regulation of gene expression. Here, RNA-based regulatory devices represent a promising emerging alternative to proteins, allowing a fast and direct control of gene expression, as no synthesi...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.6b01218

    authors: Etzel M,Mörl M

    更新日期:2017-03-07 00:00:00

  • The HIV-1 gp41 N-terminal heptad repeat plays an essential role in membrane fusion.

    abstract::For many different enveloped viruses the crystal structure of the fusion protein core has been established. A striking conservation in the tertiary and quaternary arrangement of these core structures is repeatedly revealed among members of diverse families. It has been proposed that the primary role of the core involv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0255322

    authors: Sackett K,Shai Y

    更新日期:2002-04-09 00:00:00

  • Effect of temperature on the intrinsic flexibility of DNA and its interaction with architectural proteins.

    abstract::The helical structure of double-stranded DNA is destabilized by increasing temperature. Above a critical temperature (the melting temperature), the two strands in duplex DNA become fully separated. Below this temperature, the structural effects are localized. Using tethered particle motion in a temperature-controlled ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500344j

    authors: Driessen RP,Sitters G,Laurens N,Moolenaar GF,Wuite GJ,Goosen N,Dame RT

    更新日期:2014-10-21 00:00:00

  • Temperature-dependent CD and NMR studies on a synthetic oligonucleotide containing a B-Z junction at high salt.

    abstract::It is now accepted that two or more conformations may exist within the same DNA molecule, thereby generating conformational junctions. The presence of B-Z junctions between right- and left-handed DNA conformations has been detected in plasmids by a number of techniques. Preliminary characterization of the first exampl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00428a046

    authors: Sheardy RD,Winkle SA

    更新日期:1989-01-24 00:00:00

  • N-Terminal Region of Vibrio parahemolyticus Thermostable Direct Hemolysin Regulates the Membrane-Damaging Action of the Toxin.

    abstract::Thermostable direct hemolysin (TDH) of Vibrio parahemolyticus is a membrane-damaging pore-forming toxin with potent cytolytic/cytotoxic activity. TDH exists as a tetramer consisting of protomers with a core β-sandwich domain, flanked by an 11-amino acid long N-terminal region (NTR). This NTR could not be modeled in th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00937

    authors: Kundu N,Verma P,Kumar A,Dhar V,Dutta S,Chattopadhyay K

    更新日期:2020-02-04 00:00:00

  • Purification and biochemical characterization of tubulin from the budding yeast Saccharomyces cerevisiae.

    abstract::We describe a method for isolating milligram quantities of assembly-competent tubulin from the budding yeast Saccharomyces cerevisiae. The tubulin is > 95% purified and free of contaminating enzyme activities. As a result, it has been possible to determine the yeast tubulin equilibrium-binding constant for Mg-GTP and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00085a013

    authors: Davis A,Sage CR,Wilson L,Farrell KW

    更新日期:1993-08-31 00:00:00

  • Localization of the Cl-/HCO3- anion exchanger binding site to the amino-terminal region of carbonic anhydrase II.

    abstract::Human carbonic anhydrase II (CAII) possesses a binding site for an acidic motif (D887ADD) within the carboxyl-terminal region (Ct) of the human erythrocyte chloride/bicarbonate anion exchanger, AE1. In this study, the amino acid sequence comprising this AE1 binding site was localized to the first 17 residues of CAII, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0015111

    authors: Vince JW,Carlsson U,Reithmeier RA

    更新日期:2000-11-07 00:00:00

  • Regioselectivity in the homolytic cleavage of S-adenosylmethionine.

    abstract::The observed regioselectivity of the homolytic cleavage of S-adenosylmethionine (SAM) by the radical SAM enzymes is modeled by free radical displacement reactions at sulfoxide centers. These displacements are also regioselective, in direct consequence of the reaction mechanism. The selectivity in the radical SAM react...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101509u

    authors: Kampmeier JA

    更新日期:2010-12-28 00:00:00

  • Crystal structures of Acetobacter aceti succinyl-coenzyme A (CoA):acetate CoA-transferase reveal specificity determinants and illustrate the mechanism used by class I CoA-transferases.

    abstract::Coenzyme A (CoA)-transferases catalyze transthioesterification reactions involving acyl-CoA substrates, using an active-site carboxylate to form covalent acyl anhydride and CoA thioester adducts. Mechanistic studies of class I CoA-transferases suggested that acyl-CoA binding energy is used to accelerate rate-limiting ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300957f

    authors: Mullins EA,Kappock TJ

    更新日期:2012-10-23 00:00:00

  • Relative thermodynamic stability of DNA, RNA, and DNA:RNA hybrid duplexes: relationship with base composition and structure.

    abstract::Fourteen oligonucleotides 8-21 nucleotides in length and their complements were synthesized as DNA and RNA. For each sequence, four kinds of duplexes, DNA:DNA, RNA:RNA, DNA:RNA, and RNA:DNA, were prepared. Twelve sequences had A.T/U content varying from 25 to 80% and dPy content in the DNA strands varying from 0 to 10...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00034a013

    authors: Lesnik EA,Freier SM

    更新日期:1995-08-29 00:00:00

  • Replacement of a conserved proline and the alkaline conformational change in iso-2-cytochrome c.

    abstract::Although point mutations usually lead to minor localized changes in protein structure, replacement of conserved Pro-76 with Gly in iso-2-cytochrome c induces a major conformational change. The change in structure results from mutation-induced depression of the pK for transition to an alkaline conformation with altered...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00451a043

    authors: Nall BT,Zuniga EH,White TB,Wood LC,Ramdas L

    更新日期:1989-12-12 00:00:00

  • Interaction of lipoprotein lipase with phospholipid vesicles: effect on protein and lipid structure.

    abstract::The interaction of lipoprotein lipase (LpL) and a nonhydrolyzable phosphatidylcholine, 1,2-ditetradecyl-rac-glycero-3-phosphocholine (C14-ether-PC), has been studied by several physical methods. Analysis of the circular dichroic spectrum of LpL gave the following fractional conformation: 35% alpha-helix, 30% beta-plea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00352a020

    authors: McLean LR,Larsen WJ,Jackson RL

    更新日期:1986-02-25 00:00:00

  • Chemical Inhibitors of Epigenetic Methyllysine Reader Proteins.

    abstract::Protein methylation is a common post-translational modification with diverse biological functions. Methyllysine reader proteins are increasingly a focus of epigenetics research and play important roles in regulating many cellular processes. These reader proteins are vital players in development, cell cycle regulation,...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.5b01073

    authors: Milosevich N,Hof F

    更新日期:2016-03-22 00:00:00

  • Crystal structure and ligand-binding studies of a screened peptide complexed with streptavidin.

    abstract::The thermodynamic binding parameters and crystal structure for streptavidin-peptide complexes where the peptide sequences were obtained by random screening methods are reported. The affinities between streptavidin and two heptapeptides were determined by titrating calorimetric methods [Phe-Ser-His-Pro-Gln-Asn-Thr, Ka ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00154a004

    authors: Weber PC,Pantoliano MW,Thompson LD

    更新日期:1992-10-06 00:00:00

  • Calcium modulates the photoassembly of photosystem II (Mn)4-clusters by preventing ligation of nonfunctional high-valency states of manganese.

    abstract::The requirement for Ca2+ in the Mn(2+)-dependent photoactivation of oxygen evolution was re-evaluated using 17 kDa/24 kDa-less photosystem II (PSII) membranes depleted of (Mn)4-clusters by NH2OH extraction. At optimum conditions (1 mM Mn2+/10 microM 2,6-dichlorphenolindophenol (DCIP)/20 mM Ca2+), the light-induced inc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00041a031

    authors: Chen C,Kazimir J,Cheniae GM

    更新日期:1995-10-17 00:00:00

  • Fidelity of translesional synthesis past benzo[a]pyrene diol epoxide-2'-deoxyguanosine DNA adducts: marked effects of host cell, sequence context, and chirality.

    abstract::We have used a site-specific approach to investigate the mutagenic potential of (+)- and (-)-trans-anti-benzo[a]pyrene diol epoxide (BPDE) DNA adducts. Oligodeoxyribonucleotides (5'TCCTCCTG1G2-CCTCTC), modified at the exocyclic amino groups of G1 or G2, were incorporated into a single-stranded shuttle vector and intro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9608875

    authors: Moriya M,Spiegel S,Fernandes A,Amin S,Liu T,Geacintov N,Grollman AP

    更新日期:1996-12-24 00:00:00

  • Assessment of the number of free cysteines and isolation and identification of cystine-containing peptides from acetylcholine receptor.

    abstract::The number of free cysteines in each polypeptide of acetylcholine receptor from the electric organ of Torpedo californica has been assessed by alkylating the native protein with N-ethylmaleimide and iodoacetamide during homogenization of the tissue and alkylating the polypeptides with N-ethylmaleimide as they were unf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a048

    authors: Kellaris KV,Ware DK,Smith S,Kyte J

    更新日期:1989-04-18 00:00:00

  • Kinetic evaluation of catalase and peroxygenase activities of tyrosinase.

    abstract::Tyrosinase is a copper monooxygenase containing a coupled dinuclear copper active site (type-3 copper), which catalyzes oxygenation of phenols (phenolase activity) as well as dehydrogenation of catechols (catecholase activity) using O(2) as the oxidant. In this study, catalase activity (conversion of H(2)O(2) to (1/2)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048908f

    authors: Yamazaki S,Morioka C,Itoh S

    更新日期:2004-09-14 00:00:00

  • Fluoride inhibition of Klebsiella aerogenes urease: mechanistic implications of a pseudo-uncompetitive, slow-binding inhibitor.

    abstract::Klebsiella aerogenes urease uses a dinuclear nickel active site to catalyze the hydrolysis of urea. Here, we describe the steady-state and pre-steady-state kinetics of urease inhibition by fluoride. Urease is slowly inhibited by fluoride in both the presence and absence of substrate. Steady-state rate studies yield pa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992287m

    authors: Todd MJ,Hausinger RP

    更新日期:2000-05-09 00:00:00