Replacement of a conserved proline and the alkaline conformational change in iso-2-cytochrome c.

Abstract:

:Although point mutations usually lead to minor localized changes in protein structure, replacement of conserved Pro-76 with Gly in iso-2-cytochrome c induces a major conformational change. The change in structure results from mutation-induced depression of the pK for transition to an alkaline conformation with altered heme ligation. To assess the importance of position 76 in stabilizing the native versus the alkaline structure, the equilibrium and kinetic properties of the pH-induced conformational change have been compared for normal and mutant iso-2-cytochrome c. The pKapp for the conformational change is reduced from 8.45 (normal iso-2) to 6.71 in the mutant protein (Gly-76 iso-2), suggesting that conservation of Pro-76 may be required to stabilize the native conformation at physiological pH. The kinetics of the conformational change for both the normal and mutant proteins are well-described by a single kinetic phase throughout most of the pH-induced transition zone. Over this pH range, a minimal mechanism proposed for horse cytochrome c [Davis, L. A., Schejter, A., & Hess, G. P. (1974) J. Biol. Chem. 249, 2624-2632] is consistent with the data for normal and mutant yeast iso-2-cytochromes c: NH KH----N + H+ kcf in equilibrium kcb A NH and N are native forms of cytochrome c with a 695-nm absorbance band, A is an alkaline form that lacks the 695-nm band, KH is a proton dissociation constant, and kcf and kcb are microscopic rate constants for the conformational change. The Gly-76 mutation increases kcf by almost 70-fold, but kcb and KH are unchanged.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Nall BT,Zuniga EH,White TB,Wood LC,Ramdas L

doi

10.1021/bi00451a043

subject

Has Abstract

pub_date

1989-12-12 00:00:00

pages

9834-9

issue

25

eissn

0006-2960

issn

1520-4995

journal_volume

28

pub_type

杂志文章
  • Crystal structures of two potent nonamidine inhibitors bound to factor Xa.

    abstract::There has been intense interest in the development of factor Xa inhibitors for the treatment of thrombotic diseases. Our laboratory has developed a series of novel non-amidine inhibitors of factor Xa. This paper presents two crystal structures of compounds from this series bound to factor Xa. The first structure is de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0264061

    authors: Adler M,Kochanny MJ,Ye B,Rumennik G,Light DR,Biancalana S,Whitlow M

    更新日期:2002-12-31 00:00:00

  • Influence of the calcium-induced gel phase on the behavior of small molecules in phosphatidylserine and phosphatidylserine-phosphatidylcholine multilamellar vesicles.

    abstract::The behavior of fluorescent and spin-label probes is examined in several fluid and gel phospholipid phases, with particular focus on the Ca2+-induced gel phase in phosphatidylserine (PS). These probes have behavior characteristic of the type of probe and of the type of lipid environment. Anthroyloxy- and doxyl-labeled...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00380a039

    authors: Florine KI,Feigenson GW

    更新日期:1987-03-24 00:00:00

  • Kinetics of the subtransition in dipalmitoylphosphatidylcholine.

    abstract::The kinetics of the interconversions of the subgel and gel phases in dipalmitoylphosphatidylcholine have been studied by using differential dilatometry, differential scanning calorimetry (DSC), and neutral buoyancy centrifugation as a function of incubation temperature and deuteriation of the solvent. As seen by other...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00388a016

    authors: Tristram-Nagle S,Wiener MC,Yang CP,Nagle JF

    更新日期:1987-07-14 00:00:00

  • Modification of aldose reductase by S-nitrosoglutathione.

    abstract::Kinetic and structural changes in recombinant human aldose reductase (AR) due to modification by S-nitrosoglutathione (GSNO) were investigated. Incubation of the enzyme with 10-50 microM GSNO led to a time- and concentration-dependent inactivation of the enzyme, with a second-order rate constant of 0.087 +/- 0.009 M-1...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9714722

    authors: Chandra A,Srivastava S,Petrash JM,Bhatnagar A,Srivastava SK

    更新日期:1997-12-16 00:00:00

  • The linker between SH2 and kinase domains positively regulates catalysis of the Tec family kinases.

    abstract::Tec family nonreceptor tyrosine kinases are key immunological enzymes that control processes that range from T and B cell development to reorganization of the actin cytoskeleton. The full-length Tec kinases have been resistant to crystallization. This lack of structural data and the paucity of in vitro biochemical dat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602512e

    authors: Joseph RE,Min L,Andreotti AH

    更新日期:2007-05-08 00:00:00

  • Sequential phosphorylation of rhodopsin at multiple sites.

    abstract::Photolyzed rhodopsin is phosphorylated at multiple serine and threonine residues during the quenching of phototransduction. Sites of phosphorylation by rhodopsin kinase have been localized to the C-terminal region of rhodopsin, but no information was available on the kinetics and identity of phosphorylated residues. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00072a030

    authors: Ohguro H,Palczewski K,Ericsson LH,Walsh KA,Johnson RS

    更新日期:1993-06-01 00:00:00

  • Molecular mechanism for low pH triggered misfolding of the human prion protein.

    abstract::Conformational changes in the prion protein cause transmissible spongiform encephalopathies, also referred to as prion diseases. In its native state, the prion protein is innocuous (PrPC), but it can misfold into a neurotoxic and infectious isoform (PrPSc). The full-length cellular form of the prion protein consists o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0619066

    authors: DeMarco ML,Daggett V

    更新日期:2007-03-20 00:00:00

  • The selectivity of Vibrio cholerae H-NOX for gaseous ligands follows the "sliding scale rule" hypothesis. Ligand interactions with both ferrous and ferric Vc H-NOX.

    abstract::Vc H-NOX (or VCA0720) is an H-NOX (heme-nitric oxide and oxygen binding) protein from facultative aerobic bacterium Vibrio cholerae. It shares significant sequence homology with soluble guanylyl cyclase (sGC), a NO sensor protein commonly found in animals. Similar to sGC, Vc H-NOX binds strongly to NO and CO with affi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401408x

    authors: Wu G,Liu W,Berka V,Tsai AL

    更新日期:2013-12-31 00:00:00

  • Structural insights into the membrane fusion mechanism mediated by influenza virus hemagglutinin.

    abstract::Membrane fusion is involved in many fundamental cellular processes and entry of enveloped viruses into host cells. Influenza type A virus HA has long served as a paradigm for mechanistic studies of protein-mediated membrane fusion via large-scale structural rearrangements induced by acidic pH. Here we report the newly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401525h

    authors: Ni F,Chen X,Shen J,Wang Q

    更新日期:2014-02-11 00:00:00

  • Details of mannitol transport in Escherichia coli elucidated by site-specific mutagenesis and complementation of phosphorylation site mutants of the phosphoenolpyruvate-dependent mannitol-specific phosphotransferase system.

    abstract::The mannitol transport protein (EIImtl) carries out translocation with concomitant phosphorylation of mannitol from the periplasm to the cytoplasm, at the expense of phosphoenolpyruvate (PEP). The phosphoryl group which is needed for this group translocation is sequentially transferred from PEP via two phosphorylation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00221a006

    authors: van Weeghel RP,van der Hoek YY,Pas HH,Elferink M,Keck W,Robillard GT

    更新日期:1991-02-19 00:00:00

  • Multiple equilibria binding treatment of lipid and detergent interactions with membrane proteins. Application to cytochrome c oxidase solubilized in cholate.

    abstract::A modified multiple binding equilibria treatment is presented that allows determination of thermodynamic parameters of the interaction of phospholipids with integral membrane proteins solubilized in excess detergent. Lipid binding is modeled as a series of exchange reactions between lipid molecules and detergent molec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00376a019

    authors: Volwerk JJ,Mrsny RJ,Patapoff TW,Jost PC,Griffith OH

    更新日期:1987-01-27 00:00:00

  • Interaction of tetrahydrofolate and other folate derivatives with bacterial sarcosine oxidase.

    abstract::Sarcosine oxidase from Corynebacterium sp. P-1 binds 2 mol of tetrahydrofolate/mol of enzyme (KD = 8.8 microM). The same stoichiometry is observed with tetrahydropteroyltetraglutamate (KD = 15.4 microM). Binding is also observed with pteroyltetraglutamate and with 5-formyltetrahydrofolate. In the case of the pteroylmo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00397a029

    authors: Kvalnes-Krick K,Jorns MS

    更新日期:1987-11-17 00:00:00

  • A study of protein-sodium dodecyl sulfate complexes by transient electric birefringence.

    abstract::The method of transient electric birefringence has been applied to study the conformation of protein-sodium dodecyl sulfate complexes. A model of a deformable prolate ellipsoid has been proposed for the protein-dodecyl sulfate complex. This model is compared to the models proposed by J. A. Reynolds and C. Tanford (197...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00685a030

    authors: Wright AK,Thompson MR,Miller RL

    更新日期:1975-07-15 00:00:00

  • Conformational basis for substrate recruitment in protein tyrosine phosphatase 10D.

    abstract::The coordinated activity of protein tyrosine phosphatases (PTPs) is crucial for the initiation, modulation, and termination of diverse cellular processes. The catalytic activity of this protein depends on a nucleophilic cysteine at the active site that mediates the hydrolysis of the incoming phosphotyrosine substrate....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201092q

    authors: Madan LL,Gopal B

    更新日期:2011-11-22 00:00:00

  • Trafficking of preassembled opioid mu-delta heterooligomer-Gz signaling complexes to the plasma membrane: coregulation by agonists.

    abstract::The cellular site of formation, Galpha-coupling preference, and agonist regulation of mu-delta opioid receptor (OR) heterooligomers were studied. Bioluminescence resonance energy transfer (BRET) showed that mu-deltaOR heterooligomers, composed of preformed mu and delta homooligomers, interacted constitutively in the e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701436w

    authors: Hasbi A,Nguyen T,Fan T,Cheng R,Rashid A,Alijaniaram M,Rasenick MM,O'Dowd BF,George SR

    更新日期:2007-11-13 00:00:00

  • Comparison of the structural changes occurring during the primary phototransition of two different channelrhodopsins from Chlamydomonas algae.

    abstract::Channelrhodopsins (ChRs) from green flagellate algae function as light-gated ion channels when expressed heterologously in mammalian cells. Considerable interest has focused on understanding the molecular mechanisms of ChRs to bioengineer their properties for specific optogenetic applications such as elucidating the f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501243y

    authors: Ogren JI,Yi A,Mamaev S,Li H,Lugtenburg J,DeGrip WJ,Spudich JL,Rothschild KJ

    更新日期:2015-01-20 00:00:00

  • High-spin states (S >/= 5/2) of the photosystem II manganese complex.

    abstract::The Mn4 complex which is involved in water oxidation in photosystem II (PSII) is known to exhibit two types of EPR signals in the S2 state, one of the five redox states of the enzyme cycle: either a multiline signal (S = 1/2) or a signal at g = 4.1 (S = 3/2 or S= 5/2). The S = 1/2 state can be converted to that respon...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9728710

    authors: Boussac A,Un S,Horner O,Rutherford AW

    更新日期:1998-03-24 00:00:00

  • Effects of subunit interactions on the activity of lactate dehydrogenase studied in immobilized enzyme systems.

    abstract::Rabbit muscle lactate dehydrogenase (LDH) was coupled to Sepharose in such a way that each molecule is expected to be attached via only one subunit. Dissociation of the bound active enzyme by several methods all yielded immobilized subunit derivatives which were inactive. These derivatives were capable of regenerating...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00664a013

    authors: Chan WW,Mosbach K

    更新日期:1976-09-21 00:00:00

  • Conformational changes and substrate recognition in Pseudomonas aeruginosa D-arginine dehydrogenase.

    abstract::DADH catalyzes the flavin-dependent oxidative deamination of d-amino acids to the corresponding α-keto acids and ammonia. Here we report the first X-ray crystal structures of DADH at 1.06 Å resolution and its complexes with iminoarginine (DADH(red)/iminoarginine) and iminohistidine (DADH(red)/iminohistidine) at 1.30 Å...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1005865

    authors: Fu G,Yuan H,Li C,Lu CD,Gadda G,Weber IT

    更新日期:2010-10-05 00:00:00

  • Nuclear magnetic resonance solution structure of an undecanucleotide duplex with a complementary thymidine base opposite a 10R adduct derived from trans addition of a deoxyadenosine N6-amino group to (-)-(7R,8S,9R,10S)-7,8-dihydroxy- 9,10-epoxy-7,8,9,10-t

    abstract::The solution structure of a modified undecamer duplex containing (-)-(7R,8S,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a] pyrene covalently bonded through trans ring opening at C10 of the epoxide by the N6-amino group of deoxyadenosine (dA) was studied. This diol epoxide 1 diastereomer has the benzylic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00028a009

    authors: Schurter EJ,Sayer JM,Oh-hara T,Yeh HJ,Yagi H,Luxon BA,Jerina DM,Gorenstein DG

    更新日期:1995-07-18 00:00:00

  • Structure of the bradykinin B2 receptors' amino terminus.

    abstract::The peptide hormone bradykinin exerts important biological functions by binding to and activating bradykinin B2 receptors. B2 receptors belong to the seven transmembrane domain (7TM) receptor family. Cloning of the cDNA sequences for the rat, human, and mouse bradykinin B2 receptor revealed several in-frame AUG triple...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9601060

    authors: AbdAlla S,Godovac-Zimmermann J,Braun A,Roscher AA,Müller-Esterl W,Quitterer U

    更新日期:1996-06-11 00:00:00

  • Comparative binding properties of metallobleomycins with DNA 10-mers.

    abstract::Properties of the interaction of bleomycin (Blm) and metallobleomycins [M = Zn, Cu(II), Fe(III), and HO(2)-Co(III)] with site-specific and nonspecific DNA oligomers, d(GGAAGCTTCC)(2) (I) and d(GGAAATTTCC)(2) (II), respectively, were investigated. With both 10-mers association constants increased in the series Blm A(2)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001915t

    authors: Li W,Zhao C,Xia C,Antholine WE,Petering DH

    更新日期:2001-06-26 00:00:00

  • Nuclear Magnetic Resonance Structural Mapping Reveals Promiscuous Interactions between Clathrin-Box Motif Sequences and the N-Terminal Domain of the Clathrin Heavy Chain.

    abstract::The recruitment and organization of clathrin at endocytic sites first to form coated pits and then clathrin-coated vesicles depend on interactions between the clathrin N-terminal domain (TD) and multiple clathrin binding sequences on the cargo adaptor and accessory proteins that are concentrated at such sites. Up to f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00065

    authors: Zhuo Y,Cano KE,Wang L,Ilangovan U,Hinck AP,Sousa R,Lafer EM

    更新日期:2015-04-28 00:00:00

  • Oxygen binding constants for human hemoglobin tetramers.

    abstract::High-precision studies of oxygen binding in hemoglobin (HbA0) solutions at near-physiological concentrations (2-12 mM heme; pHs 7.0-9.1; various buffers) have led to an unanticipated result: an unmeasurably low contribution from the triply ligated species. We have obtained this result from new differential oxygen-bind...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00387a038

    authors: Gill SJ,Di Cera E,Doyle ML,Bishop GA,Robert CH

    更新日期:1987-06-30 00:00:00

  • Comparison of cDNA-derived protein sequences of the human fibronectin and vitronectin receptor alpha-subunits and platelet glycoprotein IIb.

    abstract::The fibronectin receptor (FnR), the vitronectin receptor (VnR), and the platelet membrane glycoprotein (GP) IIb-IIIa complex are members of a family of cell adhesion receptors, which consist of noncovalently associated alpha- and beta-subunits. The present study was designed to compare the cDNA-derived protein sequenc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00399a021

    authors: Fitzgerald LA,Poncz M,Steiner B,Rall SC Jr,Bennett JS,Phillips DR

    更新日期:1987-12-15 00:00:00

  • A heterocyclic inhibitor of the REV-RRE complex binds to RRE as a dimer.

    abstract::As part of a search for organic compounds that selectively target RNA, we found that specific diphenylfuran derivatives, which are related to compounds that bind to the DNA minor groove, bind very strongly to RNA in a manner very sensitive to the structure of the compounds. In extended development of the diphenylfuran...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002338b

    authors: Li K,Davis TM,Bailly C,Kumar A,Boykin DW,Wilson WD

    更新日期:2001-02-06 00:00:00

  • Mechanism of bypass synthesis through an abasic site analog by DNA polymerase I.

    abstract::Bypass synthesis by DNA polymerase I was studied using synthetic 40-nucleotide-long gapped duplex DNAs each containing a site-specific abasic site analog, as a model system for mutagenesis associated with DNA lesions. Bypass synthesis proceeded in two general stages: a fast polymerization stage that terminated opposit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9621324

    authors: Paz-Elizur T,Takeshita M,Livneh Z

    更新日期:1997-02-18 00:00:00

  • Secondary structure and interaction of phage D108 Ner repressor with a 61-base-pair operator: evidence for altered protein and DNA structures in the complex.

    abstract::Ner repressors of the transposable phages Mu and D108 play a central role in regulating the expression of the early (transposase) operon and in ensuring that phage growth proceeds along a lytic pathway. The latter function is analogous to that performed by the Cro protein of phage lambda. Unlike lambda Cro, however, t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00201a018

    authors: Benevides JM,Kukolj G,Autexier C,Aubrey KL,DuBow MS,Thomas GJ Jr

    更新日期:1994-09-06 00:00:00

  • Fibril formation and neurotoxicity by a herpes simplex virus glycoprotein B fragment with homology to the Alzheimer's A beta peptide.

    abstract::Despite significant progress in the elucidation of the genetic basis of early-onset familial Alzheimer's disease (AD), the etiology of sporadic cases remains elusive. Although certain genetic loci play a role in conferring susceptibility in some sporadic AD cases, it is likely that the etiology is multifactorial; henc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000029f

    authors: Cribbs DH,Azizeh BY,Cotman CW,LaFerla FM

    更新日期:2000-05-23 00:00:00

  • DNA intramolecular triplexes containing dT --> dU substitutions: unfolding energetics and ligand binding.

    abstract::We used a combination of optical and calorimetric techniques to investigate the incorporation of deoxythymidine --> deoxyuridine (dT --> dU) substitutions in the duplex and third strand of the parallel intramolecular triplex d(A(7)C(5)T(7)C(5)T(7)) (ATT). UV and differential scanning calorimetry melting experiments sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052203b

    authors: Soto AM,Rentzeperis D,Shikiya R,Alonso M,Marky LA

    更新日期:2006-03-07 00:00:00