Excitation energy transfer in the LHC-II trimer: a model based on the new 2.72 A structure.

Abstract:

:Energy transfer of the light harvesting complex LHC-II trimer, extracted from spinach, was studied in the Q(y) region at room temperature by femtosecond transient absorption spectroscopy. Configuration interaction exciton method [Linnanto et al. (1999) J Phys Chem B 103: 8739-8750] and 2.72 A structural information reported by Liu et al. was used to calculate spectroscopic properties and excitation energy transfer rates of the complex. Site energies of the pigments and coupling constants of pigment pairs in close contact were calculated by using a quantum chemical configuration interaction method. Gaussian random variation of the diagonal and off-diagonal exciton matrix elements was used to account for inhomogeneous broadening. Rate calculations included only the excitonic states initially excited and probed in the experiments. A kinetic model was used to simulate time and wavelength dependent absorption changes after excitation on the blue side of the Q(y) transition and compared to experimentally recorded rates. Analysis of excitonic wavefunctions allowed identification of pigments initially excited and probed into later. It was shown that excitation of the blue side of the Q(y) band of a single LHC-II complex results in energy transfer from chlorophyll b's of the lumenal side to chlorophyll a's located primarly on one of the monomers of the stromal side.

journal_name

Photosynth Res

journal_title

Photosynthesis research

authors

Linnanto J,Martiskainen J,Lehtovuori V,Ihalainen J,Kananavicius R,Barbato R,Korppi-Tommola J

doi

10.1007/s11120-005-9004-1

subject

Has Abstract

pub_date

2006-03-01 00:00:00

pages

267-79

issue

3

eissn

0166-8595

issn

1573-5079

journal_volume

87

pub_type

杂志文章
  • Three types of Photosystem II photoinactivation : I. Damaging processes on the acceptor side.

    abstract::Oxygen evolving photosystem II particles were exposed to 100 and 250 W m(-2) white light at 20°C under aerobic, anaerobic and strongly reducing (presence of dithionite) conditions. Three types of photoinactivation processes with different kinetics could be distinguished: (1) The fast process which occurs under strongl...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00030061

    authors: Setlík I,Allakhverdiev SI,Nedbal L,Setlíková E,Klimov VV

    更新日期:1990-01-01 00:00:00

  • Toward a photosynthetic microbial platform for terpenoid engineering.

    abstract::Plant terpenoids are among the most diverse group of naturally-occurring organic compounds known, and several are used in contemporary consumer products. Terpene synthase enzymes catalyze complex rearrangements of carbon skeleton precursors to yield thousands of unique chemical structures that range in size from the s...

    journal_title:Photosynthesis research

    pub_type: 杂志文章,评审

    doi:10.1007/s11120-014-9979-6

    authors: Davies FK,Jinkerson RE,Posewitz MC

    更新日期:2015-03-01 00:00:00

  • Contribution to the structural characterization of eucaryotic PSI reaction centre-I. Critical analysis of the polypeptidic composition of different P700 enriched fractions.

    abstract::In thylakoid membranes, several peptides of high MW† are present which may interfere with the study of CP1's components. Modifying Cleveland's technique [7] for limited proteolysis, we have characterized the polypeptides found in the 60 kD region. Some may result from incomplete washing of the CF1 while others come fr...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00020071

    authors: Lagoutte B,Setif P,Duranton J

    更新日期:1980-03-01 00:00:00

  • The effect of high-energy-state excitation quenching on maximum and dark level chlorophyll fluorescence yield.

    abstract::The quenching of variable fluorescence yield (qN) and the quenching of dark level fluorescence yield (q0) directly atributable to high-energy-state fluorescence quenching (qE) was studied to distinguish between energy dissipation in the antenna and light harvesting complexes (antenna quenching) and energy dissipation ...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00033161

    authors: Rees D,Noctor GD,Horton P

    更新日期:1990-09-01 00:00:00

  • The formation and characterization of the in vitro polymeric aggregates of bacteriochlorophyllc homologs fromChlorobium limicola in aqueous suspension in the presence of monogalactosyl diglyceride.

    abstract::Artificial aggregates of bacteriochlorophyllc (BChlc) were formed in an aqueous medium in the presence of a lipid, monogalactosyl diglyceride (MGDG), and the optical properties of those aggregates were studied by absorption and circular dichroism (CD) mainly. Four BChlc homologs, ([E,E]BChlc F, [P,E]BChlc F, [E,M]BChl...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF02184164

    authors: Uehara K,Mimuro M,Ozaki Y,Olson JM

    更新日期:1994-07-01 00:00:00

  • A model for the mechanism of chloride activation of oxygen evolution in photosystem II.

    abstract::A hypothesis is proposed to explain the function of Cl(-) in activating the oxygenevolving complex (OEC) of photosystem II (PS II), based on the results of recent (35)Cl-NMR studies. The putative mechanism involves Cl(-) binding to two types of sites. An intrinsic site is suggested to be composed of three histidyl res...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00029400

    authors: Coleman WJ,Govindjee

    更新日期:1987-09-01 00:00:00

  • Effect of light intensity on ammonia assimilation in maize leaves.

    abstract::The effect of light on the metabolism of ammonia was studied by subjecting detached maize leaves to 150 or 1350 μmol m(-2) s(-1) PAR during incubation with the leaf base in 2 mM (15)NH4Cl. After up to 60 min, leaves were extracted. Ammonia, glutamine, glycine, serine, alanine, and aspartate were separated by isotherma...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00049278

    authors: Klaus RE,Berger MG,Fock HP

    更新日期:1985-09-01 00:00:00

  • Long-distance translocation of photosynthates: a primer.

    abstract::The storage of light energy in chemical form through photosynthesis is the key process underlying life as we know it. To utilize photosynthates efficiently as structural materials or as fuel to drive endergonic processes, they have to be transported from where they are produced to where they are needed. In this primer...

    journal_title:Photosynthesis research

    pub_type: 杂志文章,评审

    doi:10.1007/s11120-013-9867-5

    authors: Knoblauch M,Peters WS

    更新日期:2013-11-01 00:00:00

  • Photosynthetic acclimation in trees to rising atmospheric CO2: A broader perspective.

    abstract::Analysis of leaf-level photosynthetic responses of 39 tree species grown in elevated concentrations of atmospheric CO2 indicated an average photosynthetic enhancement of 44% when measured at the growth [CO2]. When photosynthesis was measured at a common ambient [CO2], photosynthesis of plants grown at elevated [CO2] w...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00014592

    authors: Gunderson CA,Wullschleger SD

    更新日期:1994-03-01 00:00:00

  • Theoretical characterization of excitation energy transfer in chlorosome light-harvesting antennae from green sulfur bacteria.

    abstract::We present a theoretical study of excitation dynamics in the chlorosome antenna complex of green photosynthetic bacteria based on a recently proposed model for the molecular assembly. Our model for the excitation energy transfer (EET) throughout the antenna combines a stochastic time propagation of the excitonic wave ...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-014-9978-7

    authors: Fujita T,Huh J,Saikin SK,Brookes JC,Aspuru-Guzik A

    更新日期:2014-06-01 00:00:00

  • Getting the most out of natural variation in C4 photosynthesis.

    abstract::C4 photosynthesis is a complex trait that has a high degree of natural variation, involving anatomical and biochemical changes relative to the ancestral C3 state. It has evolved at least 66 times across a variety of lineages and the evolutionary route from C3 to C4 is likely conserved but not necessarily genetically i...

    journal_title:Photosynthesis research

    pub_type: 杂志文章,评审

    doi:10.1007/s11120-013-9872-8

    authors: Covshoff S,Burgess SJ,Kneřová J,Kümpers BM

    更新日期:2014-02-01 00:00:00

  • The inhibitory effects of acidification and augmented oxygen pressure on water oxidation.

    abstract::Cyanobacteria, algae, and plants produce dioxygen from water. Driven and clocked by light quanta, the catalytic Mn(4)Ca Tyrosine centre accumulates four oxidizing equivalents before it abstracts four electrons from water and liberates dioxygen and protons. Intermediates of this reaction cascade are short-lived (<100 m...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-008-9321-2

    authors: Clausen J,Junge W

    更新日期:2008-10-01 00:00:00

  • An LED-based fluorometer for chlorophyll quantification in the laboratory and in the field.

    abstract::The chlorophyll content is an important experimental parameter in agronomy and plant biology research. In this report, we explore the feasibility of determining total concentration of extracts containing chlorophyll a and chlorophyll b by chlorophyll fluorescence. We found that an excitation at 457 nm results in the s...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-012-9777-y

    authors: Lamb JJ,Eaton-Rye JJ,Hohmann-Marriott MF

    更新日期:2012-10-01 00:00:00

  • Overcoming drought-induced decreases in soybean leaf photosynthesis by measuring with CO2-enriched air.

    abstract::Soybean [Glycine max (L.) Merr. cv. Williams 82 and A3127] plants were grown in the field under long-term soil moisture deficit and irrigation to determine the effects of severe drought stress on the photosynthetic capacity of soybean leaves. Afternoon leaf water potentials, stomatal conductances, intercellular CO2 co...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00051735

    authors: Frederick JR,Alm DM,Hesketh JD,Below FE

    更新日期:1990-07-01 00:00:00

  • Early detection of bean infection by Pseudomonas syringae in asymptomatic leaf areas using chlorophyll fluorescence imaging.

    abstract::Chlorophyll fluorescence imaging has been used to analyse the response elicited in Phaseolus vulgaris after inoculation with Pseudomonas syringae pv. phaseolicola 1448A (compatible interaction) and P. syringae pv. tomato DC3000 (incompatible interaction). With the aim of modulating timing of symptom development, diffe...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-007-9278-6

    authors: Rodríguez-Moreno L,Pineda M,Soukupová J,Macho AP,Beuzón CR,Barón M,Ramos C

    更新日期:2008-04-01 00:00:00

  • Phototrophic purple sulfur bacteria as heat engines in the South Andros Black Hole.

    abstract::Photosynthetic organisms normally endeavor to optimize the efficiency of their light-harvesting apparatus. However, here we describe two bacterial isolates belonging to the genera Allochromatium and Thiocapsa that demonstrate a novel adaptation by optimizing their external growth conditions at the expense of photosynt...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-007-9246-1

    authors: Herbert RA,Gall A,Maoka T,Cogdell RJ,Robert B,Takaichi S,Schwabe S

    更新日期:2008-02-01 00:00:00

  • Photosynthetic functions and thylakoid membrane polypeptide composition in light-sensitive mutants of Chlamydomonas reinhardii.

    abstract::In this paper we compared the pigment composition, photochemical activity, chloroplast ultrastructure, thylakoid membrane polypeptide composition and ribosomal content of wild-type and seven light-sensitive mutants of Chlamydomonas reinhardii.All the mutants had low chlorophyll and carotenoid content compared to wild-...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00032261

    authors: Gyurján I,Nagy AH,Frdős G,Paless G,Keresztes A,Kovacs P,Szigeti Z

    更新日期:1982-01-01 00:00:00

  • An immunological method for quantitative determination of photosynthetic fructose-1,6-bisphosphatase in leaf crude extracts.

    abstract::An immunological method for quantitative determination of photosynthetic fructose-1,6-bisphosphatase in crude extracts of leaves is proposed. It is based on the ELISA technique, and offers two modifications. A non-competitive technique has a higher sensitivity and is the right option for samples of low fructose-1,6-bi...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00032710

    authors: Hermoso R,Chueca A,Lazaro JJ,Lopez-Gorge J

    更新日期:1987-01-01 00:00:00

  • Photosynthetic properties of leaves of a yellow green mutant of wheat compared to its wild type.

    abstract::We investigated several photosynthetic parameters of a virescent mutant of durum wheat and of its wild-type. Electron transport rate to ferricyanide was the same in the two genotypes when expressed on leaf area basis while O2 evolution of the leaf tissue in saturating light and CO2 was slightly higher in the yellow ge...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00033365

    authors: Marco GD,D'Ambrosio N,Giardi MT,Massacci A,Tricoli D

    更新日期:1989-08-01 00:00:00

  • Routing of thylakoid lumen proteins by the chloroplast twin arginine transport pathway.

    abstract::Thylakoids are complex sub-organellar membrane systems whose role in photosynthesis makes them critical to life. Thylakoids require the coordinated expression of both nuclear- and plastid-encoded proteins to allow rapid response to changing environmental conditions. Transport of cytoplasmically synthesized proteins to...

    journal_title:Photosynthesis research

    pub_type: 杂志文章,评审

    doi:10.1007/s11120-018-0567-z

    authors: New CP,Ma Q,Dabney-Smith C

    更新日期:2018-12-01 00:00:00

  • Modulation of photosynthetic activity and photoprotection in Haematococcus pluvialis cells during their conversion into haematocysts and back.

    abstract::The engagement of different photoprotective mechanisms in the cells of the carotenogenic astaxanthin-accumulating chlorophyte Haematococcus pluvialis (i) under favorable conditions, (ii) in the course of stress-induced haematocyst formation and (iii) during recovery from the stress was studied. To this end, we followe...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-016-0246-x

    authors: Chekanov K,Lukyanov A,Boussiba S,Aflalo C,Solovchenko A

    更新日期:2016-06-01 00:00:00

  • Composition and biosynthesis of thylakoid membrane polypeptides in the red alga Cyanidium caldarium: Comparison with the thylakoid polypeptide composition of higher plants and cyanobacteria.

    abstract::The polypeptide composition of thylakoid membranes of the red alga Cyanidium caldarium was studied by PAGE in the presence of lithium dodecyl sulfate. The thylakoid membranes were shown to contain 65 polypeptides with mol wt from 110 to 10 kDa. PS I isolated from C. caldarium cells is composed of at least 5 components...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00035678

    authors: Yurina NP,Karakashev GV,Karapetyan NV,Odintsova MS

    更新日期:1991-10-01 00:00:00

  • Nitrate and nitrite as 'in vivo' quenchers of chlorophyll fluorescence in blue-green algae.

    abstract::The effect of nitrate and nitrite on long-term chlorophyll fluorescence has been studied in filamentous blue-green algae. Cells grown autotrophically with nitrate as nitrogen source show, under argon atmosphere, a high level of fluorescence. The addition of either nitrete or nitrite induces a significant fluorescence ...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00032356

    authors: Serrano A,Rivas J,Losada M

    更新日期:1981-09-01 00:00:00

  • Isolation and characterization of the ccmM gene required by the cyanobacterium Synechocystis PCC6803 for inorganic carbon utilization.

    abstract::A high CO2-requiring mutant of Synechocystis PCC6803 (G3) capable of Ci transport but unable to utilize the intracellular Ci pool for photosynthesis was constructed. A DNA clone of 6.1 kbp that transforms the G3 mutant to the wild-type phenotype was isolated from a Synechocystis PCC6803 genomic library. Complementatio...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00029385

    authors: Ogawa T,Amichay D,Gurevitz M

    更新日期:1994-02-01 00:00:00

  • Selenium-induced protection of photosynthesis activity in rape (Brassica napus) seedlings subjected to cadmium stress. Fluorescence and EPR measurements.

    abstract::Fluorescence and electron paramagnetic resonance measurements were used to study selenium influence on photosystem activity in rape seedlings affected by Cd stress. Water cultures containing Hoagland nutrients were supplemented with 400 microM of CdCl(2), 2 microM of Na(2)SeO(4) and a mixture of both CdCl(2) and Na(2)...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-010-9551-y

    authors: Filek M,Kościelniak J,Łabanowska M,Bednarska E,Bidzińska E

    更新日期:2010-07-01 00:00:00

  • Physiological effects of sublethal atrazine on barley chloroplast thylakoid membranes.

    abstract::This study was conducted to more clearly define the physiological effects of PS II herbicides on chloroplast thylakoid membrane activity and composition. Barley (Hordeum vulgare L. cv Boone) was grown in hydroponic culture at 20°C in a growth chamber with a light intensity of 500 μmole photons m(-2) s(-1). Atrazine (2...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00028793

    authors: De la Torre WR,Burkey KO

    更新日期:1992-04-01 00:00:00

  • Subunit organization of PSI particles from brown algae and diatoms: polypeptide and pigment analysis.

    abstract::P700 enriched fractions were isolated from two brown algae and one diatom using sucrose density centrifugation after digitinin solubilization. They had a Chl a/P700 ratio of about 250 to 375 according to the species, they were enriched in long-wavelength absorbing Chl a and exhibited a fluorescence emission maximum at...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/BF00035009

    authors: Berkaloff C,Caron L,Rousseau B

    更新日期:1990-02-01 00:00:00

  • Induced leaf intercellular CO₂, photosynthesis, potassium and nitrate retention and strawberry early fruit formation under macronutrient limitation.

    abstract::Relationships between induced high leaf intercellular CO₂ concentrations, leaf K⁺ and NO₃⁻ ion movement and early fruit formation under macronutrient limitation are not well understood. We examined the effects and interactions of reduced K/N input treatments on leaf intercellular CO₂, photosynthesis rate, carboxylatio...

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1007/s11120-013-9832-3

    authors: Li H,Li T,Fu G,Katulanda P

    更新日期:2013-07-01 00:00:00

  • In situ c(4) phosphoenolpyruvate carboxylase activity and kinetic properties in isolated digitaria sanguinalis mesophyll cells.

    abstract::Isolated mesophyll cells from darkened leaves of the C(4) plant Digitaria sanguinalis keep functional plasmodesmata that allow the free exchange of low molecular mass compounds with the surrounding medium. This cell suspension system has been used to measure C(4) PEPC activity in situ using a spectrophotometric assay....

    journal_title:Photosynthesis research

    pub_type: 杂志文章

    doi:10.1023/B:PRES.0000017179.31351.f0

    authors: Pierre JN,Prieto JL,Gadal P,Vidal J

    更新日期:2004-01-01 00:00:00

  • Shmuel Malkin (1934-2017) : Listening to photosynthesis and making music.

    abstract::We present here the life and work of Shmuel Malkin (1934-2017), an accomplished scientist and a gifted musician who touched the lives of many around the world. His early scientific work addressed the dynamics of light harvesting and electron transport in photosynthesis. Later, he used photoacoustic and photothermal me...

    journal_title:Photosynthesis research

    pub_type: 传,历史文章,杂志文章

    doi:10.1007/s11120-018-0478-z

    authors: Herbert SK,Siderer Y,Govindjee

    更新日期:2018-07-01 00:00:00